[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	382472978
Known Splicing Events:	379271841
Partial Novel Splicing Events:	1534313
Novel Splicing Events:	1565436
Filtered Splicing Events:	101388

Total splicing  Junctions:	413418
Known Splicing Junctions:	244297
Partial Novel Splicing Junctions:	99585
Novel Splicing Junctions:	69536

===================================================================
Create BED file ...
Create Interact file ...