Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/6893322936952d65d1688c3c8dfa3f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f198a43e0b3b36a809705502818a7f/659_bhK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/6893322936952d65d1688c3c8dfa3f/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4472770aae09656741932a093fa6a1/659_bhK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 382472978
[W::hts_idx_load3] The index file is older than the data file: 659_bhK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	382472978
Known Splicing Events:	379271841
Partial Novel Splicing Events:	1534313
Novel Splicing Events:	1565436
Filtered Splicing Events:	101388

Total splicing  Junctions:	413418
Known Splicing Junctions:	244297
Partial Novel Splicing Junctions:	99585
Novel Splicing Junctions:	69536

===================================================================
Create BED file ...
Create Interact file ...