Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/31aec49406e27772d200aa48d60e22/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/4f8f842ac14de5227de5f544510b56/tih_rna_sample_00462_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/31aec49406e27772d200aa48d60e22/.command.run ==> STAGING COMPLETE (3 inputs) ls: *.bai: No such file or directory ls: *.csi: No such file or directory