File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/6a9470a0d8102f2e56d8dad005f010/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:54:49
                             Started mapping on |	Jun 08 10:01:53
                                    Finished on |	Jun 08 11:18:40
       Mapping speed, Million of reads per hour |	231.15

                          Number of input reads |	295806000
                      Average input read length |	256
                                    UNIQUE READS:
                   Uniquely mapped reads number |	279655137
                        Uniquely mapped reads % |	94.54%
                          Average mapped length |	255.15
                       Number of splices: Total |	322653347
            Number of splices: Annotated (sjdb) |	317665361
                       Number of splices: GT/AG |	318564949
                       Number of splices: GC/AG |	2082785
                       Number of splices: AT/AC |	229685
               Number of splices: Non-canonical |	1775928
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.17
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	13204450
             % of reads mapped to multiple loci |	4.46%
        Number of reads mapped to too many loci |	749999
             % of reads mapped to too many loci |	0.25%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1938935
                 % of reads unmapped: too short |	0.66%
                Number of reads unmapped: other |	257479
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%