Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/5a3089c9ab8ac50ef1ee495a4605f3/659_djb-T1-TRNA-1_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/04443a7666ff0c96e25c3663a51d22/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/04443a7666ff0c96e25c3663a51d22/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory