File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/01144b41ae256b41bdc18317be2fe6/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:23:39
                             Started mapping on |	Jun 08 09:30:58
                                    Finished on |	Jun 08 10:14:54
       Mapping speed, Million of reads per hour |	285.26

                          Number of input reads |	208876971
                      Average input read length |	238
                                    UNIQUE READS:
                   Uniquely mapped reads number |	198095020
                        Uniquely mapped reads % |	94.84%
                          Average mapped length |	238.46
                       Number of splices: Total |	195663457
            Number of splices: Annotated (sjdb) |	192049088
                       Number of splices: GT/AG |	192808494
                       Number of splices: GC/AG |	1387635
                       Number of splices: AT/AC |	129284
               Number of splices: Non-canonical |	1338044
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.18
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.85
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8027680
             % of reads mapped to multiple loci |	3.84%
        Number of reads mapped to too many loci |	754981
             % of reads mapped to too many loci |	0.36%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1662326
                 % of reads unmapped: too short |	0.80%
                Number of reads unmapped: other |	336964
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%