Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4678714b8e162a7dbf4c6cced3c370/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f9db5aed8cb99727ef1241e9d0080d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f9db5aed8cb99727ef1241e9d0080d/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 271131764
unpaired = 4126588
MERGED PAIRED END READS = 271131764
MATES PROCESSED = 546390116
TOTAL READS     = 275258352
DISTINCT READS  = 4.61577e+07
DISTINCT COUNTS = 1151
MAX COUNT       = 709300
COUNTS OF 1     = 8.87889e+06
MAX TERMS       = 100
OBSERVED COUNTS (709301)
1	8878886
2	5445485
3	4883580
4	4450433
5	3960618
6	3422642
7	2887744
8	2384539
9	1934356
10	1550118
11	1230676
12	971553
13	766729
14	605061
15	477367
16	378979
17	302619
18	242383
19	196618
20	160375
21	132791
22	109126
23	91572
24	77662
25	65757
26	55749
27	47927
28	41387
29	35785
30	30865
31	27142
32	23950
33	20923
34	18558
35	16469
36	14705
37	13179
38	12015
39	10893
40	9846
41	8808
42	8015
43	7540
44	6950
45	6311
46	5863
47	5494
48	5153
49	4814
50	4583
51	4218
52	4017
53	3709
54	3517
55	3318
56	3003
57	2982
58	2768
59	2677
60	2454
61	2394
62	2283
63	2112
64	2071
65	1986
66	1788
67	1764
68	1698
69	1621
70	1571
71	1520
72	1456
73	1316
74	1250
75	1202
76	1207
77	1146
78	1082
79	1066
80	1043
81	949
82	976
83	915
84	828
85	824
86	794
87	817
88	775
89	743
90	735
91	736
92	686
93	643
94	652
95	610
96	610
97	584
98	592
99	579
100	514
101	502
102	492
103	510
104	484
105	456
106	444
107	444
108	396
109	406
110	412
111	388
112	374
113	362
114	371
115	314
116	335
117	347
118	331
119	352
120	305
121	290
122	300
123	310
124	288
125	296
126	282
127	280
128	262
129	269
130	234
131	259
132	221
133	224
134	238
135	228
136	226
137	211
138	233
139	203
140	205
141	195
142	186
143	178
144	214
145	195
146	163
147	175
148	174
149	164
150	170
151	159
152	172
153	150
154	159
155	157
156	123
157	139
158	134
159	130
160	148
161	134
162	131
163	123
164	111
165	125
166	120
167	125
168	124
169	126
170	121
171	110
172	118
173	98
174	114
175	117
176	123
177	105
178	96
179	113
180	86
181	93
182	95
183	99
184	102
185	101
186	96
187	89
188	95
189	75
190	101
191	81
192	82
193	88
194	74
195	69
196	81
197	79
198	76
199	69
200	77
201	66
202	63
203	80
204	65
205	76
206	68
207	54
208	76
209	63
210	65
211	69
212	68
213	63
214	63
215	65
216	67
217	53
218	56
219	63
220	56
221	58
222	55
223	49
224	63
225	50
226	58
227	50
228	49
229	51
230	54
231	48
232	35
233	46
234	44
235	45
236	56
237	47
238	66
239	47
240	52
241	38
242	47
243	39
244	50
245	48
246	40
247	42
248	42
249	48
250	48
251	41
252	40
253	42
254	34
255	36
256	43
257	42
258	43
259	30
260	21
261	29
262	36
263	30
264	41
265	28
266	33
267	35
268	28
269	35
270	19
271	29
272	27
273	31
274	29
275	28
276	39
277	37
278	35
279	29
280	23
281	32
282	21
283	26
284	27
285	27
286	24
287	18
288	22
289	24
290	23
291	19
292	24
293	19
294	41
295	22
296	23
297	23
298	15
299	23
300	26
301	24
302	11
303	19
304	30
305	20
306	31
307	19
308	17
309	21
310	21
311	15
312	11
313	24
314	18
315	23
316	19
317	21
318	18
319	20
320	15
321	19
322	19
323	19
324	21
325	13
326	21
327	24
328	18
329	11
330	22
331	12
332	16
333	15
334	18
335	19
336	28
337	22
338	15
339	14
340	27
341	19
342	15
343	16
344	16
345	13
346	21
347	13
348	22
349	12
350	15
351	16
352	13
353	15
354	15
355	13
356	19
357	13
358	18
359	11
360	14
361	7
362	20
363	14
364	14
365	14
366	11
367	21
368	12
369	13
370	12
371	15
372	12
373	10
374	10
375	14
376	17
377	16
378	7
379	10
380	13
381	13
382	11
383	4
384	11
385	11
386	14
387	7
388	10
389	18
390	15
391	10
392	15
393	12
394	13
395	13
396	8
397	11
398	9
399	13
400	12
401	12
402	6
403	10
404	11
405	12
406	17
407	16
408	12
409	8
410	11
411	10
412	9
413	13
414	12
415	13
416	9
417	8
418	9
419	11
420	7
421	7
422	11
423	7
424	11
425	5
426	17
427	7
428	12
429	10
430	11
431	8
432	5
433	8
434	8
435	10
436	11
437	15
438	8
439	5
440	13
441	3
442	7
443	7
444	11
445	6
446	11
447	2
448	8
449	7
450	9
451	7
452	8
453	5
454	11
455	3
456	5
457	7
458	6
459	8
460	6
461	6
462	7
463	7
464	4
465	7
466	12
467	8
468	7
469	17
470	8
471	3
472	5
473	6
474	6
475	7
476	5
477	7
478	6
479	4
480	3
481	5
482	6
483	8
484	8
485	9
486	4
487	3
488	5
489	7
490	6
491	5
492	5
493	5
494	3
495	7
496	2
497	3
498	3
499	5
500	8
501	4
502	7
503	6
504	6
505	2
506	8
507	7
508	7
509	6
510	1
511	3
512	8
513	4
514	6
515	6
516	6
517	5
518	3
519	9
520	9
521	7
522	5
523	7
524	5
525	2
526	4
527	2
528	7
529	6
530	1
531	8
532	2
533	5
534	5
535	6
536	3
537	10
538	3
539	4
540	5
542	6
543	2
544	2
545	3
546	4
547	4
548	4
549	2
550	2
551	4
552	1
553	6
554	5
555	3
556	5
557	5
558	3
559	1
560	2
561	6
562	2
563	2
564	4
565	4
566	3
567	4
568	2
569	4
570	3
571	5
572	6
573	7
574	3
576	7
578	2
579	2
580	1
581	1
582	4
583	2
584	3
585	3
586	2
588	2
589	3
590	2
591	4
592	3
593	4
594	5
595	3
596	2
597	6
598	2
599	2
600	4
601	3
602	4
603	1
604	2
605	3
606	3
607	5
608	2
609	2
612	5
613	2
614	2
615	7
616	4
617	6
618	5
619	4
620	4
621	1
622	2
623	1
624	4
625	2
626	1
627	1
628	2
630	2
631	1
632	6
633	1
634	1
636	2
637	2
638	6
639	5
640	6
641	2
642	8
644	1
645	3
646	2
647	1
648	3
650	5
651	3
652	3
653	2
654	3
655	3
656	3
657	1
658	5
660	1
661	2
662	1
663	1
664	1
666	3
667	2
669	3
670	1
671	1
672	3
673	3
674	4
675	2
676	2
677	4
678	3
679	2
680	1
681	2
682	1
683	1
684	1
685	1
686	4
687	9
688	1
689	3
691	2
692	2
693	1
694	2
695	1
696	1
697	1
698	5
699	3
700	1
701	7
702	2
703	4
704	2
705	2
706	2
707	1
710	5
711	4
712	3
713	2
714	5
716	1
717	1
720	2
721	1
722	5
723	2
724	1
725	3
726	1
727	3
728	4
729	3
730	1
731	3
733	4
734	1
735	5
737	1
738	2
740	1
741	2
742	1
743	2
744	3
745	1
747	1
748	1
749	2
750	3
751	3
752	1
753	2
754	1
756	1
757	3
760	3
761	2
762	1
763	3
764	2
765	3
767	2
768	3
769	1
770	2
771	1
773	3
774	1
775	2
776	2
777	3
778	1
779	1
781	2
782	2
783	1
785	2
787	1
788	2
789	1
790	2
792	4
793	3
794	2
795	4
796	3
797	2
798	4
800	1
801	2
802	2
803	1
804	2
805	2
806	1
808	2
809	4
812	1
813	2
814	1
815	3
816	1
818	1
819	1
820	1
821	2
825	1
827	2
828	2
829	1
836	3
837	2
839	1
841	1
842	2
844	4
845	1
846	2
848	1
849	1
850	1
851	3
853	1
855	4
856	2
857	1
860	1
862	2
863	1
864	2
865	2
866	2
867	1
869	2
870	2
873	1
874	1
876	1
878	1
883	3
884	1
885	1
888	1
890	2
891	1
892	2
893	1
894	1
895	1
898	1
900	1
901	2
902	1
904	1
905	2
908	1
910	1
912	1
913	1
915	2
916	1
921	1
922	1
924	1
925	1
930	1
931	1
934	1
936	1
942	1
948	1
950	1
951	1
952	1
954	1
956	1
957	1
959	1
961	1
963	3
967	1
968	1
969	2
970	2
971	1
972	1
974	1
976	1
980	1
981	1
984	2
985	1
986	1
989	2
990	1
991	2
992	1
994	1
995	1
997	1
998	1
1002	2
1003	1
1006	2
1010	1
1011	3
1012	1
1019	1
1020	1
1022	2
1023	2
1025	1
1026	1
1027	1
1031	2
1032	1
1033	2
1035	1
1037	1
1039	1
1041	1
1043	1
1046	2
1047	2
1052	1
1053	1
1057	1
1059	1
1063	3
1066	1
1068	1
1069	1
1071	1
1072	1
1073	3
1081	2
1082	1
1088	2
1090	1
1091	1
1094	1
1096	1
1098	1
1099	2
1108	1
1109	1
1112	1
1113	1
1117	1
1119	1
1120	1
1124	1
1134	1
1135	3
1139	1
1140	1
1143	1
1147	1
1149	1
1150	1
1153	1
1154	1
1155	1
1156	1
1163	1
1164	1
1169	1
1171	1
1173	1
1174	1
1176	2
1179	1
1183	1
1185	1
1188	1
1191	2
1192	1
1196	1
1197	1
1209	1
1214	1
1219	1
1220	1
1222	3
1232	1
1235	1
1236	1
1237	2
1241	1
1244	1
1245	1
1247	1
1248	1
1250	1
1251	1
1254	1
1257	1
1258	2
1261	1
1262	1
1267	1
1269	1
1274	1
1276	1
1282	1
1290	1
1303	1
1310	2
1316	1
1321	1
1322	1
1324	1
1327	1
1330	1
1332	1
1333	1
1334	1
1336	1
1346	1
1348	1
1352	1
1360	1
1362	1
1370	1
1375	1
1377	2
1381	1
1391	1
1400	1
1401	1
1402	1
1403	1
1405	1
1409	1
1412	2
1416	1
1417	1
1422	1
1423	1
1434	1
1438	1
1447	1
1448	1
1452	1
1453	1
1460	1
1462	1
1471	1
1479	1
1488	1
1491	1
1492	1
1494	1
1497	1
1498	1
1501	1
1506	1
1513	1
1518	1
1531	1
1533	1
1537	1
1538	1
1540	1
1552	1
1574	1
1579	1
1585	1
1589	1
1594	1
1600	1
1601	1
1602	1
1607	1
1614	1
1617	2
1624	1
1628	1
1632	1
1660	1
1661	1
1662	1
1666	1
1675	1
1687	1
1697	1
1720	1
1723	1
1728	1
1734	2
1740	1
1743	1
1744	1
1757	1
1759	1
1774	1
1802	1
1814	1
1817	1
1836	1
1849	1
1856	1
1861	1
1866	1
1907	1
1917	1
1918	1
1919	1
1948	1
1979	1
2008	1
2010	1
2036	1
2048	1
2053	1
2078	1
2126	1
2150	1
2152	1
2153	1
2177	1
2182	1
2202	1
2214	1
2227	1
2231	1
2235	1
2241	1
2244	1
2250	1
2306	1
2337	1
2406	1
2432	1
2463	1
2474	1
2539	1
2551	1
2554	1
2568	1
2610	1
2662	1
2672	1
2710	1
2934	1
2980	1
3004	1
3007	1
3100	1
3173	1
3332	1
3343	1
3490	1
3515	1
3533	1
3749	1
3791	1
3986	1
4096	1
4151	1
4164	1
4380	1
4519	1
5600	1
5606	1
6633	1
8430	1
8674	1
10441	1
10764	1
12315	1
39780	1
709300	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........._............._........_..._........................._...__....
..............._.._....._...._._........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]