Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/ca8e17e805cbd95b98cd3bca8ea439/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/31e4ce64f6d1ae3ad80c5e6631c367/659_bGW-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/ca8e17e805cbd95b98cd3bca8ea439/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293212331
unpaired = 4437240
MERGED PAIRED END READS = 293212331
MATES PROCESSED = 590861902
TOTAL READS     = 297649571
DISTINCT READS  = 6.82558e+07
DISTINCT COUNTS = 1207
MAX COUNT       = 726277
COUNTS OF 1     = 1.6762e+07
MAX TERMS       = 100
OBSERVED COUNTS (726278)
1	16762047
2	11792577
3	9561860
4	7557926
5	5787331
6	4320378
7	3168076
8	2302309
9	1666105
10	1204718
11	883072
12	651101
13	486784
14	368659
15	284468
16	221460
17	175808
18	140664
19	114157
20	93174
21	77791
22	65265
23	55132
24	47180
25	40375
26	34773
27	30198
28	26715
29	24044
30	21162
31	18511
32	16779
33	15366
34	14058
35	12619
36	11500
37	10681
38	9665
39	8838
40	8356
41	7567
42	7174
43	6543
44	6099
45	5766
46	5284
47	5013
48	4680
49	4407
50	4145
51	3939
52	3747
53	3434
54	3242
55	3103
56	2838
57	2760
58	2703
59	2516
60	2426
61	2217
62	2259
63	2106
64	1890
65	1961
66	1777
67	1805
68	1622
69	1573
70	1408
71	1498
72	1423
73	1388
74	1345
75	1273
76	1237
77	1182
78	1097
79	1094
80	1066
81	1003
82	943
83	948
84	926
85	943
86	909
87	807
88	788
89	765
90	711
91	734
92	718
93	694
94	625
95	591
96	587
97	615
98	580
99	550
100	565
101	510
102	528
103	516
104	478
105	513
106	494
107	434
108	470
109	442
110	413
111	396
112	427
113	390
114	357
115	409
116	388
117	383
118	354
119	353
120	358
121	367
122	300
123	314
124	287
125	320
126	292
127	288
128	259
129	302
130	279
131	246
132	230
133	257
134	239
135	254
136	231
137	217
138	255
139	219
140	223
141	222
142	217
143	199
144	198
145	209
146	180
147	218
148	170
149	202
150	199
151	171
152	168
153	164
154	169
155	162
156	177
157	142
158	127
159	147
160	145
161	141
162	142
163	144
164	164
165	122
166	134
167	140
168	138
169	115
170	125
171	117
172	141
173	135
174	127
175	109
176	109
177	117
178	87
179	126
180	121
181	102
182	85
183	107
184	96
185	86
186	98
187	101
188	80
189	77
190	88
191	95
192	89
193	85
194	100
195	100
196	109
197	93
198	104
199	83
200	83
201	68
202	74
203	91
204	88
205	66
206	72
207	68
208	82
209	71
210	70
211	76
212	54
213	66
214	62
215	55
216	62
217	39
218	56
219	58
220	58
221	64
222	47
223	55
224	64
225	67
226	52
227	57
228	44
229	64
230	58
231	52
232	59
233	48
234	44
235	47
236	50
237	48
238	45
239	48
240	49
241	38
242	48
243	34
244	55
245	57
246	38
247	41
248	43
249	49
250	51
251	46
252	44
253	47
254	39
255	52
256	44
257	50
258	42
259	37
260	41
261	46
262	43
263	37
264	32
265	44
266	26
267	27
268	31
269	29
270	44
271	42
272	40
273	33
274	36
275	29
276	30
277	27
278	30
279	36
280	23
281	16
282	31
283	20
284	23
285	37
286	29
287	23
288	32
289	19
290	30
291	25
292	29
293	36
294	29
295	26
296	27
297	27
298	25
299	13
300	27
301	22
302	21
303	15
304	24
305	20
306	21
307	25
308	25
309	22
310	33
311	19
312	26
313	19
314	23
315	26
316	28
317	19
318	26
319	26
320	22
321	18
322	30
323	21
324	12
325	18
326	13
327	20
328	16
329	27
330	15
331	15
332	22
333	13
334	24
335	15
336	20
337	13
338	12
339	21
340	22
341	24
342	14
343	23
344	20
345	22
346	15
347	20
348	15
349	25
350	18
351	15
352	13
353	15
354	18
355	22
356	25
357	19
358	15
359	7
360	13
361	14
362	17
363	18
364	18
365	17
366	13
367	14
368	26
369	11
370	6
371	15
372	15
373	20
374	9
375	15
376	15
377	20
378	14
379	13
380	7
381	7
382	10
383	16
384	14
385	8
386	9
387	12
388	16
389	10
390	8
391	11
392	16
393	11
394	14
395	15
396	12
397	6
398	14
399	14
400	10
401	19
402	10
403	9
404	14
405	10
406	12
407	12
408	12
409	13
410	7
411	9
412	9
413	6
414	11
415	8
416	16
417	6
418	10
419	8
420	10
421	11
422	13
423	10
424	19
425	6
426	11
427	10
428	8
429	11
430	8
431	8
432	7
433	11
434	10
435	10
436	9
437	9
438	4
439	5
440	8
441	14
442	9
443	4
444	2
445	13
446	6
447	2
448	9
449	10
450	7
451	7
452	6
453	9
454	7
455	9
456	2
457	12
458	5
459	7
460	9
461	13
462	6
463	9
464	5
465	6
466	3
467	7
468	11
469	7
470	5
471	6
472	4
473	6
474	6
475	6
476	5
477	4
478	8
479	10
480	7
481	6
482	6
483	11
484	7
485	10
486	4
487	1
488	4
489	6
490	6
491	10
492	9
493	4
494	5
495	6
496	7
497	10
498	8
499	10
500	11
501	5
502	5
503	7
504	8
505	5
506	8
507	4
508	9
509	9
510	3
511	1
512	5
513	5
514	4
515	5
516	5
517	11
518	5
519	5
520	9
521	4
522	5
523	4
524	6
525	2
526	4
527	3
528	6
529	3
530	5
531	4
532	2
533	8
534	6
535	6
536	8
537	11
538	3
539	5
541	3
542	1
543	6
544	8
545	4
546	6
547	3
548	5
549	5
550	1
551	3
552	1
553	2
554	4
555	2
556	6
557	4
558	9
559	7
560	2
561	4
562	8
563	5
564	5
565	5
566	3
567	7
568	3
569	2
570	2
571	2
572	4
573	1
574	2
575	5
576	4
577	2
578	1
579	7
580	4
581	6
582	4
583	4
584	2
586	4
587	3
588	3
589	1
590	3
591	5
592	2
593	4
594	4
595	5
596	4
597	3
598	4
599	1
600	3
601	4
602	4
603	5
604	6
605	1
606	2
607	4
608	2
609	1
610	4
611	2
612	7
613	3
614	7
615	7
616	4
617	5
618	3
619	3
620	1
621	5
622	1
623	5
624	3
626	1
627	3
628	3
629	4
630	3
631	4
632	3
633	2
634	1
636	2
637	2
638	1
639	3
640	3
641	1
642	1
643	2
644	1
645	5
646	3
647	1
648	1
649	2
651	1
652	4
653	1
654	1
655	2
656	4
658	1
659	3
660	1
661	1
662	3
663	2
664	3
665	4
666	4
667	3
668	2
669	1
670	2
671	5
672	5
673	2
674	2
675	6
676	2
677	2
678	1
680	3
681	1
682	2
683	1
684	6
685	1
686	3
687	3
688	3
689	1
690	1
691	2
692	2
693	4
694	1
695	2
696	3
697	3
698	3
699	3
700	1
701	2
702	1
703	3
704	2
705	2
706	4
707	3
708	1
709	1
710	3
711	3
712	4
713	3
714	1
715	1
716	2
717	3
718	1
719	1
720	2
721	1
722	4
723	1
724	1
725	2
726	2
728	1
730	4
731	1
732	3
733	3
735	2
736	1
737	1
738	3
739	3
740	1
741	2
743	1
744	1
745	1
746	3
747	2
748	5
749	3
750	1
751	1
753	3
754	2
755	1
756	1
757	3
758	1
760	2
761	3
762	2
765	1
767	1
768	3
769	1
770	1
771	1
772	1
776	3
777	1
778	1
779	1
780	1
781	1
783	3
784	2
786	4
787	1
789	2
790	1
791	2
792	4
793	1
794	3
795	2
797	2
798	2
799	2
800	3
801	3
802	1
803	1
805	1
806	2
807	1
809	1
810	1
811	2
812	2
813	1
814	1
815	3
816	3
817	1
818	5
819	1
820	4
821	1
823	1
825	1
827	2
828	1
829	1
830	2
831	3
832	1
833	1
834	2
835	2
836	2
838	2
839	2
840	4
841	1
842	1
843	1
847	2
848	2
850	1
851	1
852	1
853	3
855	2
856	3
857	1
858	3
859	2
860	1
864	2
865	1
866	2
867	1
869	3
871	3
872	1
873	3
877	4
878	2
879	2
880	7
881	2
882	1
883	2
885	1
888	4
890	2
891	1
893	4
895	2
897	1
898	1
899	2
900	1
901	1
902	3
903	1
905	1
906	1
907	2
908	1
909	1
912	1
913	1
914	2
916	3
917	1
919	1
920	3
921	1
923	1
924	1
926	2
927	1
930	1
931	1
932	2
934	2
935	1
939	1
940	1
941	1
943	3
944	1
946	1
947	1
949	1
950	1
951	1
953	3
954	1
955	1
956	1
958	1
959	1
961	2
962	1
964	1
965	1
967	1
968	1
970	1
971	2
974	1
975	1
976	1
977	1
980	2
983	1
984	1
985	1
987	3
990	2
993	1
996	4
999	1
1000	1
1001	1
1002	1
1003	1
1005	3
1006	1
1007	1
1009	2
1011	2
1013	1
1014	1
1016	2
1017	1
1020	1
1022	1
1023	1
1024	1
1028	1
1030	1
1031	2
1032	2
1034	2
1035	3
1036	1
1037	1
1040	2
1041	2
1042	2
1043	2
1044	1
1051	4
1054	1
1055	1
1059	1
1060	1
1062	1
1063	1
1064	2
1065	1
1067	1
1071	2
1073	1
1075	1
1076	1
1077	2
1086	2
1087	1
1094	1
1096	1
1098	2
1100	2
1101	1
1102	1
1104	1
1105	2
1107	1
1112	1
1120	1
1121	1
1122	1
1124	1
1125	1
1126	1
1129	1
1130	2
1131	2
1133	1
1135	2
1136	1
1137	1
1140	1
1142	1
1143	1
1144	1
1150	2
1151	2
1155	1
1159	1
1162	2
1169	1
1184	1
1189	1
1192	1
1199	1
1204	1
1207	1
1209	1
1212	1
1217	1
1222	1
1224	1
1225	1
1227	1
1229	2
1230	1
1231	1
1233	1
1235	1
1236	2
1238	1
1239	2
1241	2
1242	1
1251	1
1253	1
1259	2
1265	1
1266	1
1267	1
1269	1
1271	1
1281	3
1282	1
1283	1
1284	1
1288	1
1292	2
1295	1
1297	1
1298	2
1299	1
1302	1
1303	2
1305	1
1308	1
1311	1
1317	2
1321	1
1326	1
1333	1
1334	1
1337	1
1342	1
1343	1
1344	1
1345	1
1347	1
1354	1
1363	1
1365	1
1367	2
1372	1
1373	1
1382	1
1385	1
1386	1
1390	1
1392	1
1396	1
1400	2
1401	1
1402	2
1405	1
1409	1
1418	1
1420	1
1422	1
1423	1
1426	1
1436	1
1440	1
1442	1
1446	1
1449	2
1456	1
1459	2
1464	1
1468	1
1475	1
1478	1
1511	1
1516	1
1517	1
1525	1
1546	1
1551	1
1554	1
1560	1
1571	1
1579	1
1580	1
1585	1
1597	1
1609	1
1614	1
1634	1
1635	1
1643	1
1649	1
1653	1
1658	1
1661	1
1671	1
1672	1
1676	1
1677	1
1678	1
1700	1
1706	1
1708	1
1710	1
1716	1
1718	1
1726	1
1730	1
1738	1
1740	1
1766	1
1768	1
1769	2
1772	1
1806	1
1808	1
1812	1
1814	1
1815	1
1833	1
1845	1
1846	1
1852	1
1888	1
1889	1
1894	1
1932	1
1952	1
1954	2
1969	1
1993	1
1996	1
2031	1
2033	1
2068	1
2082	1
2105	1
2116	2
2127	1
2130	1
2142	1
2145	1
2149	1
2152	1
2192	1
2268	1
2274	1
2312	1
2319	1
2338	1
2347	1
2395	1
2406	1
2448	1
2489	1
2538	1
2552	1
2562	1
2594	1
2595	1
2622	1
2733	1
2793	1
2800	1
2854	1
2916	1
2921	1
2948	1
3121	1
3150	1
3175	1
3229	1
3249	1
3266	1
3347	1
3404	1
3764	1
3776	1
3884	1
3963	1
3991	1
4262	1
4750	1
4805	1
5110	1
5150	1
5157	1
5168	1
6067	1
6364	1
8244	1
9567	1
9713	1
10137	1
10632	1
37640	1
726277	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._._..._..._..._........_..__.._....._._..........._..........._..._..._
_._....._._...._.......__...._._._..._...._..._.._...._.._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]