[W::hts_idx_load3] The index file is older than the data file: 659_bua-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	320774824
Known Splicing Events:	318236867
Partial Novel Splicing Events:	1535775
Novel Splicing Events:	844063
Filtered Splicing Events:	158119

Total splicing  Junctions:	379195
Known Splicing Junctions:	228524
Partial Novel Splicing Junctions:	84377
Novel Splicing Junctions:	66294

===================================================================
Create BED file ...
Create Interact file ...