Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a63ffd0a8f377085f057101f5e4635/FFPE_V4_0002_RNA_0001_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/fa618a64f0db3f03e2412eaf5c7fe2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/fa618a64f0db3f03e2412eaf5c7fe2/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory