Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/40dd7d7f1a910bd64181266135c686/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/40dd7d7f1a910bd64181266135c686/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/c3f7e332de97ac3b24f185b85f985a/659_cRa-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/0c1e4be9fb474b51f1423fb39f0e2c/659_cRa-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
AFF1--C4orf36
starfusion
arriba
TLK2--LINC01347
starfusion
GLI1--SCNN1A
starfusion
TLK2P1--AC110079.1
starfusion
UBE2N--MRPL42
starfusion
arriba
NLRP2--ADAMTS13
starfusion
C2CD5--PTPRD
starfusion
arriba
SH3BGRL2--BX890604.1
starfusion
arriba
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
NPHP3--ACAD11
arriba
TLK2--FAM157A
arriba
GOLGA4--PPIAP16
arriba
GOLGA4--FLNB
arriba
PARN--AC104042.1
arriba
PARN--AC061997.1
arriba
0%| | 0/16 [00:00<?, ?it/s]
Processing AFF1--C4orf36: 0%| | 0/16 [00:00<?, ?it/s]
Processing AFF1--C4orf36: 6%|▋ | 1/16 [00:00<00:01, 9.25it/s]
Processing TLK2--LINC01347: 6%|▋ | 1/16 [00:00<00:01, 9.25it/s]
Processing TLK2--LINC01347: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing GLI1--SCNN1A: 12%|█▎ | 2/16 [00:00<00:01, 9.48it/s]
Processing GLI1--SCNN1A: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing TLK2P1--AC110079.1: 19%|█▉ | 3/16 [00:00<00:01, 9.56it/s]
Processing TLK2P1--AC110079.1: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing UBE2N--MRPL42: 25%|██▌ | 4/16 [00:00<00:01, 9.59it/s]
Processing UBE2N--MRPL42: 31%|███▏ | 5/16 [00:00<00:01, 9.61it/s]
Processing NLRP2--ADAMTS13: 31%|███▏ | 5/16 [00:00<00:01, 9.61it/s]
Processing NLRP2--ADAMTS13: 38%|███▊ | 6/16 [00:00<00:01, 9.61it/s]
Processing C2CD5--PTPRD: 38%|███▊ | 6/16 [00:00<00:01, 9.61it/s]
Processing C2CD5--PTPRD: 44%|████▍ | 7/16 [00:00<00:00, 9.62it/s]
Processing SH3BGRL2--BX890604.1: 44%|████▍ | 7/16 [00:00<00:00, 9.62it/s]
Processing SH3BGRL2--BX890604.1: 50%|█████ | 8/16 [00:00<00:00, 9.61it/s]
Processing AC092807.3--DDAH1: 50%|█████ | 8/16 [00:00<00:00, 9.61it/s]
Processing AC092807.3--DDAH1: 56%|█████▋ | 9/16 [00:00<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 56%|█████▋ | 9/16 [00:00<00:00, 9.62it/s]
Processing TVP23C--CDRT4: 62%|██████▎ | 10/16 [00:01<00:00, 9.62it/s]
Processing NPHP3--ACAD11: 62%|██████▎ | 10/16 [00:01<00:00, 9.62it/s]
Processing NPHP3--ACAD11: 69%|██████▉ | 11/16 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 69%|██████▉ | 11/16 [00:01<00:00, 9.63it/s]
Processing TLK2--FAM157A: 75%|███████▌ | 12/16 [00:01<00:00, 9.63it/s]
Processing GOLGA4--PPIAP16: 75%|███████▌ | 12/16 [00:01<00:00, 9.63it/s]
Processing GOLGA4--PPIAP16: 81%|████████▏ | 13/16 [00:01<00:00, 9.63it/s]
Processing GOLGA4--FLNB: 81%|████████▏ | 13/16 [00:01<00:00, 9.63it/s]
Processing GOLGA4--FLNB: 88%|████████▊ | 14/16 [00:01<00:00, 9.63it/s]
Processing PARN--AC104042.1: 88%|████████▊ | 14/16 [00:01<00:00, 9.63it/s]
Processing PARN--AC104042.1: 94%|█████████▍| 15/16 [00:01<00:00, 9.64it/s]
Processing PARN--AC061997.1: 94%|█████████▍| 15/16 [00:01<00:00, 9.64it/s]
Processing PARN--AC061997.1: 100%|██████████| 16/16 [00:01<00:00, 9.64it/s]
Processing PARN--AC061997.1: 100%|██████████| 16/16 [00:01<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory