Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/40dd7d7f1a910bd64181266135c686/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/40dd7d7f1a910bd64181266135c686/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/c3f7e332de97ac3b24f185b85f985a/659_cRa-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/0c1e4be9fb474b51f1423fb39f0e2c/659_cRa-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
AFF1--C4orf36
starfusion
arriba
TLK2--LINC01347
starfusion
GLI1--SCNN1A
starfusion
TLK2P1--AC110079.1
starfusion
UBE2N--MRPL42
starfusion
arriba
NLRP2--ADAMTS13
starfusion
C2CD5--PTPRD
starfusion
arriba
SH3BGRL2--BX890604.1
starfusion
arriba
AC092807.3--DDAH1
arriba
TVP23C--CDRT4
arriba
NPHP3--ACAD11
arriba
TLK2--FAM157A
arriba
GOLGA4--PPIAP16
arriba
GOLGA4--FLNB
arriba
PARN--AC104042.1
arriba
PARN--AC061997.1
arriba

  0%|          | 0/16 [00:00<?, ?it/s]
Processing AFF1--C4orf36:   0%|          | 0/16 [00:00<?, ?it/s]
Processing AFF1--C4orf36:   6%|▋         | 1/16 [00:00<00:01,  9.25it/s]
Processing TLK2--LINC01347:   6%|▋         | 1/16 [00:00<00:01,  9.25it/s]
Processing TLK2--LINC01347:  12%|█▎        | 2/16 [00:00<00:01,  9.48it/s]
Processing GLI1--SCNN1A:  12%|█▎        | 2/16 [00:00<00:01,  9.48it/s]   
Processing GLI1--SCNN1A:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing TLK2P1--AC110079.1:  19%|█▉        | 3/16 [00:00<00:01,  9.56it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]
Processing UBE2N--MRPL42:  25%|██▌       | 4/16 [00:00<00:01,  9.59it/s]     
Processing UBE2N--MRPL42:  31%|███▏      | 5/16 [00:00<00:01,  9.61it/s]
Processing NLRP2--ADAMTS13:  31%|███▏      | 5/16 [00:00<00:01,  9.61it/s]
Processing NLRP2--ADAMTS13:  38%|███▊      | 6/16 [00:00<00:01,  9.61it/s]
Processing C2CD5--PTPRD:  38%|███▊      | 6/16 [00:00<00:01,  9.61it/s]   
Processing C2CD5--PTPRD:  44%|████▍     | 7/16 [00:00<00:00,  9.62it/s]
Processing SH3BGRL2--BX890604.1:  44%|████▍     | 7/16 [00:00<00:00,  9.62it/s]
Processing SH3BGRL2--BX890604.1:  50%|█████     | 8/16 [00:00<00:00,  9.61it/s]
Processing AC092807.3--DDAH1:  50%|█████     | 8/16 [00:00<00:00,  9.61it/s]   
Processing AC092807.3--DDAH1:  56%|█████▋    | 9/16 [00:00<00:00,  9.62it/s]
Processing TVP23C--CDRT4:  56%|█████▋    | 9/16 [00:00<00:00,  9.62it/s]    
Processing TVP23C--CDRT4:  62%|██████▎   | 10/16 [00:01<00:00,  9.62it/s]
Processing NPHP3--ACAD11:  62%|██████▎   | 10/16 [00:01<00:00,  9.62it/s]
Processing NPHP3--ACAD11:  69%|██████▉   | 11/16 [00:01<00:00,  9.63it/s]
Processing TLK2--FAM157A:  69%|██████▉   | 11/16 [00:01<00:00,  9.63it/s]
Processing TLK2--FAM157A:  75%|███████▌  | 12/16 [00:01<00:00,  9.63it/s]
Processing GOLGA4--PPIAP16:  75%|███████▌  | 12/16 [00:01<00:00,  9.63it/s]
Processing GOLGA4--PPIAP16:  81%|████████▏ | 13/16 [00:01<00:00,  9.63it/s]
Processing GOLGA4--FLNB:  81%|████████▏ | 13/16 [00:01<00:00,  9.63it/s]   
Processing GOLGA4--FLNB:  88%|████████▊ | 14/16 [00:01<00:00,  9.63it/s]
Processing PARN--AC104042.1:  88%|████████▊ | 14/16 [00:01<00:00,  9.63it/s]
Processing PARN--AC104042.1:  94%|█████████▍| 15/16 [00:01<00:00,  9.64it/s]
Processing PARN--AC061997.1:  94%|█████████▍| 15/16 [00:01<00:00,  9.64it/s]
Processing PARN--AC061997.1: 100%|██████████| 16/16 [00:01<00:00,  9.64it/s]
Processing PARN--AC061997.1: 100%|██████████| 16/16 [00:01<00:00,  9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory