.command.sh - Workdir - NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260515_LH00995_0042_B23WHTKLT4;L005)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/b2c4441939f937a33580c414394d5f/.command.sh
Size: 359 bytes
Task: NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT (20260515_LH00995_0042_B23WHTKLT4;L005)
Attempt

Content

#!/bin/bash -euo pipefail
bcl-convert \
     \
    --tiles s_5 \
    --output-directory output \
    --bcl-input-directory rundir \
    --sample-sheet rundir/SampleSheet.csv

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:BCLCONVERT":
    bclconvert: $(bcl-convert -V 2>&1 | head -n 1 | sed 's/^.*Version //')
END_VERSIONS