Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8235d0c6261eb378b1fd038136b06d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/8235d0c6261eb378b1fd038136b06d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/7ae8a5a4afba700f931a84749e4ede/tih_rna_sample_00479_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/bc077b0451b14e0f9358989e078f2c/tih_rna_sample_00479_B23WHTKLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory