Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/82c2a1ad5005550d83077b2509b432/tih_rna_sample_00158_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/57fc2d6b18a6c5e58a5750632d5b2c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/57fc2d6b18a6c5e58a5750632d5b2c/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory