File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/b578294ab57ab01b90168249e61b18/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:10:47
                             Started mapping on |	Jun 08 09:17:09
                                    Finished on |	Jun 08 09:54:00
       Mapping speed, Million of reads per hour |	260.39

                          Number of input reads |	159921707
                      Average input read length |	259
                                    UNIQUE READS:
                   Uniquely mapped reads number |	152798367
                        Uniquely mapped reads % |	95.55%
                          Average mapped length |	258.39
                       Number of splices: Total |	164538678
            Number of splices: Annotated (sjdb) |	161738232
                       Number of splices: GT/AG |	162564115
                       Number of splices: GC/AG |	1157991
                       Number of splices: AT/AC |	148276
               Number of splices: Non-canonical |	668296
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.78
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5302980
             % of reads mapped to multiple loci |	3.32%
        Number of reads mapped to too many loci |	272987
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1297438
                 % of reads unmapped: too short |	0.81%
                Number of reads unmapped: other |	249935
                     % of reads unmapped: other |	0.16%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%