Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/1a916be6401c7e7bcbd3afd7e36996/tih_rna_sample_00116_B23WHTKLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/f3a5cac884b08c7e37bbc7ec96bcf9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/f3a5cac884b08c7e37bbc7ec96bcf9/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory