Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/4472770aae09656741932a093fa6a1/659_bhK-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/681b0cdd0b6b2d1b921caa7bc3a9f4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/681b0cdd0b6b2d1b921caa7bc3a9f4/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 293377576
unpaired = 4003037
MERGED PAIRED END READS = 293377576
MATES PROCESSED = 590758189
TOTAL READS     = 297380613
DISTINCT READS  = 6.30625e+07
DISTINCT COUNTS = 2506
MAX COUNT       = 750187
COUNTS OF 1     = 1.65252e+07
MAX TERMS       = 100
OBSERVED COUNTS (750188)
1	16525159
2	11501681
3	9066053
4	6939711
5	5121390
6	3690456
7	2614993
8	1844125
9	1300726
10	924867
11	666436
12	488372
13	364224
14	276240
15	214242
16	169143
17	135683
18	110414
19	91192
20	76410
21	65050
22	56106
23	48438
24	42537
25	37818
26	33937
27	30874
28	27918
29	25229
30	23182
31	21560
32	20019
33	18372
34	17442
35	15855
36	15121
37	13876
38	13174
39	12322
40	11824
41	11014
42	10472
43	9790
44	9641
45	9055
46	8588
47	8188
48	7864
49	7530
50	7115
51	6766
52	6707
53	6440
54	6063
55	5979
56	5650
57	5481
58	5229
59	5142
60	4927
61	4786
62	4548
63	4279
64	4357
65	4228
66	4037
67	3906
68	3618
69	3743
70	3516
71	3460
72	3378
73	3267
74	3164
75	3095
76	3005
77	2909
78	2781
79	2803
80	2664
81	2527
82	2501
83	2456
84	2484
85	2336
86	2337
87	2238
88	2114
89	2153
90	1991
91	2001
92	1960
93	1896
94	1880
95	1879
96	1852
97	1778
98	1816
99	1676
100	1701
101	1663
102	1567
103	1642
104	1616
105	1513
106	1410
107	1441
108	1398
109	1445
110	1410
111	1324
112	1272
113	1244
114	1258
115	1231
116	1204
117	1217
118	1132
119	1146
120	1169
121	1092
122	1076
123	1085
124	1099
125	1062
126	1017
127	961
128	1010
129	1001
130	927
131	968
132	855
133	929
134	860
135	875
136	906
137	844
138	815
139	840
140	815
141	792
142	832
143	815
144	794
145	791
146	797
147	777
148	729
149	738
150	729
151	707
152	679
153	675
154	682
155	624
156	634
157	680
158	647
159	656
160	590
161	585
162	592
163	588
164	549
165	545
166	584
167	542
168	569
169	521
170	531
171	568
172	502
173	511
174	517
175	511
176	502
177	472
178	503
179	477
180	420
181	433
182	473
183	424
184	431
185	433
186	437
187	415
188	395
189	431
190	394
191	431
192	407
193	388
194	398
195	408
196	395
197	366
198	394
199	388
200	370
201	386
202	344
203	354
204	368
205	359
206	359
207	351
208	334
209	342
210	372
211	318
212	320
213	301
214	329
215	300
216	302
217	323
218	334
219	264
220	285
221	292
222	324
223	273
224	288
225	284
226	297
227	274
228	310
229	264
230	259
231	259
232	275
233	265
234	235
235	251
236	256
237	256
238	258
239	248
240	224
241	221
242	255
243	231
244	211
245	208
246	231
247	224
248	229
249	208
250	213
251	233
252	228
253	213
254	219
255	183
256	228
257	187
258	201
259	207
260	212
261	187
262	200
263	175
264	179
265	190
266	150
267	183
268	180
269	184
270	162
271	183
272	182
273	168
274	172
275	214
276	186
277	161
278	179
279	158
280	171
281	191
282	154
283	176
284	149
285	171
286	166
287	160
288	139
289	157
290	157
291	146
292	148
293	155
294	157
295	151
296	157
297	144
298	159
299	148
300	136
301	139
302	147
303	136
304	148
305	131
306	137
307	129
308	120
309	145
310	149
311	123
312	123
313	122
314	113
315	127
316	117
317	143
318	115
319	120
320	108
321	126
322	97
323	134
324	113
325	116
326	115
327	130
328	97
329	113
330	115
331	118
332	109
333	92
334	110
335	111
336	99
337	95
338	88
339	108
340	83
341	111
342	123
343	117
344	101
345	116
346	106
347	97
348	84
349	97
350	99
351	105
352	98
353	82
354	118
355	83
356	81
357	101
358	93
359	96
360	86
361	103
362	98
363	98
364	77
365	111
366	91
367	94
368	104
369	88
370	77
371	85
372	76
373	85
374	75
375	85
376	80
377	75
378	75
379	75
380	79
381	80
382	76
383	92
384	93
385	76
386	61
387	90
388	81
389	70
390	75
391	74
392	79
393	54
394	75
395	69
396	73
397	70
398	78
399	76
400	78
401	76
402	68
403	63
404	71
405	71
406	69
407	73
408	60
409	52
410	55
411	61
412	66
413	69
414	71
415	70
416	69
417	69
418	69
419	61
420	55
421	56
422	73
423	75
424	66
425	61
426	65
427	65
428	69
429	51
430	63
431	54
432	57
433	59
434	58
435	59
436	65
437	61
438	56
439	60
440	55
441	51
442	67
443	60
444	58
445	69
446	59
447	63
448	62
449	64
450	49
451	51
452	50
453	55
454	38
455	53
456	68
457	52
458	50
459	45
460	62
461	63
462	43
463	39
464	44
465	54
466	49
467	53
468	48
469	62
470	39
471	36
472	41
473	46
474	42
475	35
476	53
477	43
478	41
479	34
480	48
481	39
482	36
483	37
484	43
485	35
486	38
487	50
488	51
489	43
490	37
491	41
492	58
493	41
494	44
495	44
496	45
497	34
498	41
499	51
500	47
501	42
502	35
503	31
504	35
505	54
506	38
507	34
508	41
509	33
510	41
511	39
512	37
513	45
514	27
515	40
516	37
517	40
518	31
519	38
520	40
521	39
522	34
523	36
524	35
525	37
526	41
527	39
528	43
529	32
530	41
531	35
532	39
533	37
534	40
535	39
536	31
537	42
538	27
539	26
540	27
541	34
542	41
543	26
544	26
545	32
546	29
547	34
548	32
549	36
550	31
551	36
552	29
553	31
554	30
555	29
556	38
557	41
558	23
559	33
560	25
561	31
562	30
563	26
564	27
565	24
566	21
567	24
568	22
569	32
570	28
571	29
572	25
573	27
574	28
575	23
576	24
577	29
578	26
579	33
580	37
581	31
582	25
583	24
584	26
585	24
586	27
587	27
588	21
589	30
590	27
591	22
592	19
593	27
594	33
595	24
596	20
597	26
598	21
599	15
600	24
601	27
602	26
603	22
604	19
605	30
606	24
607	24
608	25
609	25
610	24
611	30
612	24
613	19
614	20
615	24
616	27
617	24
618	20
619	25
620	13
621	24
622	19
623	18
624	19
625	29
626	27
627	26
628	17
629	23
630	24
631	22
632	18
633	31
634	18
635	17
636	18
637	21
638	27
639	29
640	17
641	23
642	20
643	23
644	18
645	19
646	21
647	19
648	13
649	21
650	22
651	22
652	18
653	16
654	25
655	16
656	27
657	23
658	26
659	19
660	30
661	20
662	23
663	21
664	12
665	17
666	11
667	19
668	21
669	11
670	21
671	20
672	25
673	12
674	18
675	16
676	17
677	22
678	16
679	14
680	17
681	18
682	12
683	19
684	15
685	14
686	17
687	21
688	19
689	17
690	17
691	13
692	15
693	11
694	10
695	22
696	23
697	18
698	16
699	13
700	18
701	20
702	18
703	19
704	17
705	21
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710	16
711	22
712	18
713	12
714	13
715	12
716	19
717	11
718	15
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720	19
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722	20
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725	12
726	17
727	14
728	17
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730	18
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732	16
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735	15
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737	15
738	17
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740	16
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744	17
745	12
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748	9
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750	16
751	14
752	14
753	13
754	17
755	11
756	10
757	20
758	14
759	8
760	13
761	10
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763	15
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765	14
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767	15
768	7
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770	13
771	13
772	12
773	18
774	15
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776	22
777	9
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780	15
781	14
782	12
783	15
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785	17
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790	14
791	16
792	15
793	21
794	10
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796	9
797	14
798	13
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800	11
801	15
802	8
803	9
804	10
805	12
806	6
807	16
808	11
809	11
810	10
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812	11
813	13
814	13
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816	12
817	9
818	7
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820	13
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825	9
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830	14
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832	13
833	8
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838	8
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840	15
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843	5
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846	11
847	11
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850	10
851	11
852	8
853	14
854	7
855	9
856	10
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858	12
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861	10
862	11
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864	12
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866	5
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870	8
871	12
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873	9
874	13
875	6
876	10
877	9
878	10
879	11
880	8
881	10
882	9
883	6
884	9
885	8
886	8
887	8
888	14
889	9
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891	8
892	14
893	9
894	10
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896	9
897	14
898	12
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900	5
901	8
902	7
903	5
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905	11
906	3
907	7
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909	6
910	10
911	12
912	9
913	8
914	11
915	8
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920	12
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924	7
925	10
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930	9
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937	5
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940	6
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950	7
951	7
952	6
953	7
954	5
955	8
956	6
957	6
958	5
959	8
960	7
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963	7
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967	3
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969	3
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978	7
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980	7
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987	4
988	6
989	6
990	9
991	8
992	4
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994	8
995	8
996	14
997	8
998	9
999	9
1000	9
1001	7
1002	8
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1004	7
1005	7
1006	6
1007	5
1008	7
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1014	3
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1016	5
1017	6
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1021	4
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1033	9
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1038	6
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1100	5
1101	6
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1103	8
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1111	3
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1177	5
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1190	5
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1200	4
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1234	4
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1301	3
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1371	1
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1600	2
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1798	1
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1800	1
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1900	3
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1914	2
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1918	1
1919	1
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1922	1
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1925	1
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1929	1
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1932	1
1933	3
1936	2
1937	1
1939	3
1940	1
1941	2
1942	1
1943	1
1946	3
1947	1
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1949	1
1950	2
1956	2
1957	1
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1960	2
1962	1
1963	1
1966	1
1967	3
1968	2
1969	2
1971	2
1974	1
1979	2
1982	1
1983	2
1984	1
1986	1
1988	1
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1991	1
1995	1
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1998	2
1999	1
2001	1
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2006	2
2010	2
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2016	2
2018	1
2021	3
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2100	3
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2110	1
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2169	1
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2222	1
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2528	2
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2545	1
2548	1
2550	1
2557	1
2558	1
2560	1
2563	2
2565	1
2566	1
2568	1
2574	1
2575	1
2580	1
2581	1
2583	2
2584	1
2588	1
2590	1
2594	1
2595	3
2601	1
2606	1
2608	1
2615	1
2616	1
2620	2
2624	1
2626	1
2628	1
2629	1
2631	1
2633	3
2634	1
2637	1
2639	1
2644	1
2645	1
2646	1
2647	1
2651	1
2652	1
2654	1
2657	1
2658	2
2663	1
2665	1
2667	1
2668	2
2669	2
2676	1
2683	1
2687	1
2692	2
2695	1
2697	1
2702	2
2704	1
2705	1
2711	1
2715	1
2716	1
2718	1
2727	1
2731	2
2738	2
2741	3
2744	1
2746	2
2752	2
2754	1
2759	1
2761	1
2764	2
2770	1
2777	1
2786	1
2791	1
2794	1
2796	1
2802	1
2808	1
2813	1
2816	1
2821	1
2823	1
2826	1
2832	1
2843	1
2845	1
2846	1
2852	1
2858	1
2864	1
2872	1
2874	1
2883	1
2885	1
2887	1
2888	1
2894	1
2895	1
2900	1
2913	2
2916	1
2925	1
2932	1
2934	1
2942	1
2945	1
2947	1
2948	1
2955	1
2959	1
2960	1
2965	2
2974	1
2979	2
3000	1
3002	1
3006	1
3007	1
3010	1
3032	2
3033	1
3035	1
3038	1
3041	1
3047	1
3048	1
3065	1
3068	1
3070	1
3074	1
3083	1
3084	1
3086	1
3094	1
3097	1
3098	1
3104	1
3113	1
3124	1
3125	1
3136	1
3140	3
3145	1
3147	1
3149	1
3151	1
3156	1
3158	1
3163	1
3172	1
3174	1
3200	1
3211	1
3213	1
3220	1
3232	1
3233	1
3237	1
3244	1
3256	1
3260	1
3262	1
3268	1
3278	1
3287	1
3292	1
3293	1
3300	1
3304	1
3307	1
3310	1
3326	1
3327	1
3330	1
3338	1
3343	1
3362	1
3363	1
3366	1
3373	1
3376	1
3394	1
3397	1
3399	1
3406	1
3412	1
3413	1
3423	1
3427	1
3429	2
3457	1
3461	2
3462	1
3463	1
3464	1
3472	1
3481	1
3485	1
3487	2
3491	1
3522	1
3530	1
3532	1
3549	1
3552	1
3568	1
3569	1
3573	1
3584	1
3600	1
3605	1
3613	1
3614	1
3618	1
3623	1
3659	1
3669	1
3674	1
3681	1
3684	1
3701	1
3702	2
3703	1
3724	1
3729	1
3730	1
3748	1
3752	1
3761	1
3797	1
3805	1
3808	1
3836	1
3842	1
3846	1
3848	1
3849	1
3870	1
3891	1
3894	1
3906	1
3915	2
3920	1
3926	1
3943	2
3958	1
3959	1
3972	1
3977	1
3993	1
3997	1
4025	1
4050	1
4055	1
4085	1
4110	1
4113	1
4114	1
4116	1
4119	1
4152	1
4174	1
4186	1
4208	1
4217	1
4251	1
4257	1
4291	1
4301	1
4311	1
4356	1
4360	1
4394	1
4395	2
4404	1
4410	1
4425	1
4440	1
4489	1
4490	1
4542	1
4552	1
4562	1
4569	1
4615	1
4631	1
4643	1
4693	1
4699	1
4730	1
4731	1
4750	1
4811	1
4820	2
4825	1
4833	1
4854	1
4868	1
4895	1
4900	1
4929	1
4933	1
4949	1
4971	1
5028	1
5032	1
5036	1
5070	1
5097	1
5114	1
5125	1
5147	1
5179	1
5236	1
5326	1
5333	1
5352	1
5364	1
5474	1
5476	1
5497	1
5577	1
5621	1
5635	1
5654	1
5704	1
5717	1
5739	1
5743	1
5760	1
5814	1
5816	1
5848	1
5918	1
5937	1
5942	1
5956	1
6025	1
6108	1
6166	1
6170	1
6229	1
6276	1
6324	1
6354	1
6422	1
6440	1
6500	1
6521	1
6558	1
6705	1
6819	1
6822	1
6868	1
6985	1
7098	1
7172	1
7360	1
7424	1
7540	1
7572	1
7614	1
7619	1
7694	1
7827	1
7864	1
8171	1
8272	1
8317	1
8506	1
8994	1
9025	1
9195	1
9258	1
9568	1
9752	1
9944	1
9970	1
10475	1
10527	1
10682	1
11505	1
13126	1
13597	1
13702	1
14041	1
14070	1
14138	1
16589	1
17499	1
21443	1
45354	1
750187	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
___...__._.__....__.__..___.._......_....___._..__..._..__._......_...._
_....___._.._.._.___...._____..__...__.._._.__..__._.._____.__..____.__.
..__......_.____.._..._..._._._._._..__.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]