File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d0852d6d92d69f53b407d9d14ab304/.command.log
Size
78.4 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/f809ea099c32bab5631de0268dbb88/659_cWx-T1-TRNA-1_B23WHTKLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d0852d6d92d69f53b407d9d14ab304/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d0852d6d92d69f53b407d9d14ab304/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/6126c068d987f701147f9c92c26fa4/659_cWx-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/f809ea099c32bab5631de0268dbb88/659_cWx-T1-TRNA-1_B23WHTKLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.509zlXEi2u/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.509zlXEi2u/./star-fusion.preliminary
-sample contains 292881117 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir  -J /tmp/nxf.509zlXEi2u/659_cWx-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction  -O /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.509zlXEi2u/659_cWx-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

[10000], rate=16666.67/min 
[20000], rate=18750.00/min 
[30000], rate=16666.67/min 
[40000], rate=17142.86/min 
[50000], rate=17142.86/min 
[60000], rate=17307.69/min 
[70000], rate=18834.08/min 
[80000], rate=20869.57/min 
[90000], rate=21428.57/min 
[100000], rate=22471.91/min 
[110000], rate=23157.89/min 
[120000], rate=23529.41/min 
[130000], rate=24451.41/min 
[140000], rate=25609.76/min 
[150000], rate=25568.18/min 
[160000], rate=26016.26/min 
[170000], rate=26912.93/min 
[180000], rate=27763.50/min 
[190000], rate=28571.43/min 
[200000], rate=29197.08/min 
[210000], rate=29787.23/min 
[220000], rate=29662.92/min 
[230000], rate=29487.18/min 
[240000], rate=29690.72/min 
[250000], rate=30425.96/min 
[260000], rate=31075.70/min 
[270000], rate=31764.71/min 
[280000], rate=31878.56/min 
[290000], rate=31238.78/min 
[300000], rate=30560.27/min 
[310000], rate=29903.54/min 
[320000], rate=29538.46/min 
[330000], rate=29333.33/min 
[340000], rate=29018.49/min 
[350000], rate=28767.12/min 
[360000], rate=28533.69/min 
[370000], rate=28352.49/min 
[380000], rate=28148.15/min 
[390000], rate=28023.95/min 
[400000], rate=28503.56/min 
[410000], rate=28975.27/min 
[420000], rate=29439.25/min 
[430000], rate=29861.11/min 
[440000], rate=30379.75/min 
[450000], rate=30857.14/min 
[460000], rate=31328.04/min 
[470000], rate=31756.76/min 
[480000], rate=32250.84/min 
[490000], rate=32594.24/min 
[500000], rate=32537.96/min 
[510000], rate=32657.42/min 
[520000], rate=32980.97/min 
[530000], rate=33438.49/min 
[540000], rate=33820.46/min 
[550000], rate=33434.65/min 
[560000], rate=33366.43/min 
[570000], rate=33398.44/min 
[580000], rate=33397.31/min 
[590000], rate=33427.76/min 
[600000], rate=33241.00/min 
[610000], rate=32246.70/min 
[620000], rate=31686.54/min 
[630000], rate=31526.27/min 
[640000], rate=31270.36/min 
[650000], rate=31075.70/min 
[660000], rate=30889.24/min 
[670000], rate=30687.02/min 
[680000], rate=30815.71/min 
[690000], rate=30941.70/min 
[700000], rate=31042.13/min 
[710000], rate=31185.94/min 
[720000], rate=31349.78/min 
[730000], rate=31510.79/min 
[740000], rate=31556.50/min 
[750000], rate=31690.14/min 
[760000], rate=31754.87/min 
[770000], rate=31884.06/min 
[780000], rate=32054.79/min 
[790000], rate=32222.98/min 
[800000], rate=32410.53/min 
[810000], rate=32551.91/min 
[820000], rate=32712.77/min 
[830000], rate=32849.60/min 
[840000], rate=33005.89/min 
[850000], rate=33159.95/min 
[860000], rate=33311.81/min 
[870000], rate=33483.00/min 
[880000], rate=33652.01/min 
[890000], rate=33861.76/min 
[900000], rate=34026.47/min 
[910000], rate=34210.53/min 
[920000], rate=34392.52/min 
[930000], rate=34572.49/min 
[940000], rate=34729.06/min 
[950000], rate=34926.47/min 
[960000], rate=35164.84/min 
[970000], rate=35379.94/min 
[980000], rate=35593.22/min 
[990000], rate=35804.70/min 
[1000000], rate=36014.41/min 
[1010000], rate=36244.02/min 
[1020000], rate=36471.99/min 
[1030000], rate=36698.34/min 
[1040000], rate=36923.08/min 
[1050000], rate=37146.23/min 
[1060000], rate=37367.80/min 
[1070000], rate=37587.82/min 
[1080000], rate=37740.24/min 
[1090000], rate=37869.14/min 
[1100000], rate=37996.55/min 
[1110000], rate=38166.19/min 
[1120000], rate=38334.28/min 
[1130000], rate=38479.00/min 
[1140000], rate=38644.07/min 
[1150000], rate=38807.65/min 
[1160000], rate=39013.45/min 
[1170000], rate=39174.11/min 
[1180000], rate=39355.20/min 
[1190000], rate=39534.88/min 
[1200000], rate=39713.18/min 
[1210000], rate=39890.11/min 
[1220000], rate=40065.68/min 
[1230000], rate=40261.87/min 
[1240000], rate=40456.77/min 
[1250000], rate=40650.41/min 
[1260000], rate=40842.79/min 
[1270000], rate=41033.93/min 
[1280000], rate=41201.72/min 
[1290000], rate=41368.25/min 
[1300000], rate=41555.67/min 
[1310000], rate=41764.08/min 
[1320000], rate=42038.22/min 
[1330000], rate=42199.89/min 
[1340000], rate=42494.71/min 
[1350000], rate=42721.52/min 
[1360000], rate=42924.78/min 
[1370000], rate=43126.97/min 
[1380000], rate=43350.79/min 
[1390000], rate=43505.48/min 
[1400000], rate=43681.75/min 
[1410000], rate=43902.44/min 
[1420000], rate=44099.38/min 
[1430000], rate=44386.96/min 
[1440000], rate=44605.06/min 
[1450000], rate=44776.12/min 
[1460000], rate=44992.30/min 
[1470000], rate=45277.21/min 
[1480000], rate=45445.24/min 
[1490000], rate=45728.90/min 
[1500000], rate=45941.81/min 
[1510000], rate=46130.35/min 
[1520000], rate=46317.93/min 
[1530000], rate=46598.98/min 
[1540000], rate=46879.76/min 
[1550000], rate=47184.17/min 
[1560000], rate=47464.50/min 
[1570000], rate=47623.86/min 
[1580000], rate=47782.26/min 
[1590000], rate=47939.70/min 
[1600000], rate=48144.43/min 
[1610000], rate=48275.86/min 
[1620000], rate=48478.80/min 
[1630000], rate=48778.05/min 
[1640000], rate=49003.98/min 
[1650000], rate=49155.91/min 
[1660000], rate=49355.80/min 
[1670000], rate=49530.40/min 
[1680000], rate=49704.14/min 
[1690000], rate=49828.01/min 
[1700000], rate=49951.03/min 
[1710000], rate=50097.66/min 
[1720000], rate=50218.98/min 
[1730000], rate=50339.48/min 
[1740000], rate=50507.98/min 
[1750000], rate=50626.81/min 
[1760000], rate=50842.56/min 
[1770000], rate=51008.65/min 
[1780000], rate=51173.93/min 
[1790000], rate=51313.90/min 
[1800000], rate=51404.09/min 
[1810000], rate=51469.19/min 
[1820000], rate=51509.43/min 
[1830000], rate=51573.51/min 
[1840000], rate=51661.21/min 
[1850000], rate=51796.55/min 
[1860000], rate=51882.85/min 
[1870000], rate=51944.44/min 
[1880000], rate=52029.52/min 
[1890000], rate=52090.03/min 
[1900000], rate=52221.71/min 
[1910000], rate=52328.77/min 
[1920000], rate=52339.85/min 
[1930000], rate=52303.52/min 
[1940000], rate=52408.82/min 
[1950000], rate=52537.05/min 
[1960000], rate=52641.00/min 
[1970000], rate=52744.31/min 
[1980000], rate=52870.49/min 
[1990000], rate=52996.01/min 
[2000000], rate=53097.35/min 
[2010000], rate=53221.54/min 
[2020000], rate=53321.60/min 
[2030000], rate=53444.49/min 
[2040000], rate=53543.31/min 
[2050000], rate=53664.92/min 
[2060000], rate=53785.90/min 
[2070000], rate=53882.86/min 
[2080000], rate=53932.58/min 
[2090000], rate=53498.29/min 
[2100000], rate=52565.71/min 
[2110000], rate=52206.19/min 
[2120000], rate=51939.57/min 
[2130000], rate=51678.12/min 
[2140000], rate=51053.68/min 
[2150000], rate=50847.46/min 
[2160000], rate=50863.42/min 
[2170000], rate=50641.77/min 
[2180000], rate=50501.93/min 
[2190000], rate=50306.28/min 
[2200000], rate=50113.90/min 
[2210000], rate=49887.13/min 
[2220000], rate=49645.92/min 
[2230000], rate=49463.96/min 
[2240000], rate=49230.77/min 
[2250000], rate=48966.27/min 
[2260000], rate=48917.75/min 
[2270000], rate=48764.77/min 
[2280000], rate=48648.65/min 
[2290000], rate=48585.57/min 
[2300000], rate=48557.35/min 
[2310000], rate=48563.42/min 
[2320000], rate=48569.43/min 
[2330000], rate=48575.40/min 
[2340000], rate=48598.13/min 
[2350000], rate=48620.69/min 
[2360000], rate=48659.79/min 
[2370000], rate=48698.63/min 
[2380000], rate=48753.84/min 
[2390000], rate=48808.71/min 
[2400000], rate=48879.84/min 
[2410000], rate=48950.58/min 
[2420000], rate=49037.49/min 
[2430000], rate=49140.55/min 
[2440000], rate=49243.19/min 
[2450000], rate=49345.42/min 
[2460000], rate=49496.98/min 
[2470000], rate=49648.24/min 
[2480000], rate=49815.87/min 
[2490000], rate=49933.16/min 
[2500000], rate=50033.36/min 
[2510000], rate=49950.25/min 
[2520000], rate=49851.63/min 
[2530000], rate=49705.30/min 
[2540000], rate=49593.23/min 
[2550000], rate=49546.63/min 
[2560000], rate=49452.67/min 
[2570000], rate=49407.24/min 
[2580000], rate=49377.99/min 
[2590000], rate=49349.00/min 
[2600000], rate=49335.86/min -building interval tree based on /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

[10000], rate=37500.00/min 
[20000], rate=42857.14/min 
[30000], rate=41860.47/min 
[40000], rate=40677.97/min 
[50000], rate=34883.72/min 
[60000], rate=33333.33/min 
[70000], rate=35000.00/min 
[80000], rate=36090.23/min 
[90000], rate=38297.87/min 
[100000], rate=38461.54/min 
[110000], rate=38372.09/min 
[120000], rate=36548.22/min 
[130000], rate=30830.04/min 
[140000], rate=28378.38/min 
[150000], rate=27439.02/min 
[160000], rate=26966.29/min 
[170000], rate=27419.35/min 
[180000], rate=26799.01/min 
[190000], rate=26267.28/min 
[200000], rate=25531.91/min 
[210000], rate=25454.55/min 
[220000], rate=25142.86/min 
[230000], rate=24909.75/min 
[240000], rate=24742.27/min 
[250000], rate=24590.16/min 
[260000], rate=23926.38/min 
[270000], rate=23823.53/min 
[280000], rate=23661.97/min 
[290000], rate=23513.51/min 
[300000], rate=23255.81/min 
[310000], rate=23192.02/min 
[320000], rate=23104.69/min 
[330000], rate=22916.67/min 
[340000], rate=22793.30/min 
[350000], rate=22826.09/min 
[360000], rate=22784.81/min 
[370000], rate=22886.60/min 
[380000], rate=23053.59/min 
[390000], rate=23054.19/min 
[400000], rate=23054.76/min 
[410000], rate=23055.30/min 
[420000], rate=23119.27/min 
[430000], rate=23097.58/min 
[440000], rate=23198.59/min 
[450000], rate=23215.82/min 
[460000], rate=23291.14/min 
[470000], rate=22815.53/min 
[480000], rate=22695.04/min 
[490000], rate=22879.38/min 
[500000], rate=23112.48/min 
[510000], rate=23323.17/min 
[520000], rate=23564.95/min 
[530000], rate=23820.22/min 
[540000], rate=24089.22/min 
[550000], rate=24282.56/min 
[560000], rate=24471.96/min 
[570000], rate=24622.03/min 
[580000], rate=24803.99/min 
[590000], rate=25035.36/min 
[600000], rate=25263.16/min 
[610000], rate=25505.23/min 
[620000], rate=25743.94/min 
[630000], rate=25872.69/min 
[640000], rate=26016.26/min 
[650000], rate=26156.94/min 
[660000], rate=26312.29/min 
[670000], rate=26464.78/min 
[680000], rate=26597.13/min 
[690000], rate=26744.19/min 
[700000], rate=26888.60/min 
[710000], rate=27047.62/min 
[720000], rate=27221.17/min 
[730000], rate=27392.12/min 
[740000], rate=27526.35/min 
[750000], rate=27675.28/min 
[760000], rate=27855.83/min 
[770000], rate=27932.29/min 
[780000], rate=27857.14/min 
[790000], rate=27686.92/min 
[800000], rate=27809.97/min 
[810000], rate=28092.49/min 
[820000], rate=28308.40/min 
[830000], rate=28538.68/min 
[840000], rate=28767.12/min 
[850000], rate=28993.75/min 
[860000], rate=29218.57/min 
[870000], rate=29474.87/min 
[880000], rate=29713.00/min 
[890000], rate=29832.40/min 
[900000], rate=29331.88/min 
[910000], rate=29213.48/min 
[920000], rate=29144.67/min 
[930000], rate=29107.98/min 
[940000], rate=29042.22/min 
[950000], rate=28948.70/min 
[960000], rate=28930.19/min 
[970000], rate=28984.06/min 
[980000], rate=28979.79/min 
[990000], rate=29046.45/min 
[1000000], rate=29097.96/min 
[1010000], rate=29106.63/min 
[1020000], rate=29142.86/min 
[1030000], rate=29247.52/min 
[1040000], rate=29364.71/min 
[1050000], rate=29494.38/min 
[1060000], rate=29595.16/min 
[1070000], rate=29639.89/min 
[1080000], rate=29752.07/min 
[1090000], rate=29863.01/min 
[1100000], rate=30013.64/min 
[1110000], rate=30122.12/min 
[1120000], rate=30094.04/min 
[1130000], rate=30173.56/min 
[1140000], rate=30265.49/min 
[1150000], rate=30369.72/min 
[1160000], rate=30499.56/min 
[1170000], rate=30588.24/min 
[1180000], rate=30622.84/min 
[1190000], rate=30815.71/min 
[1200000], rate=30994.40/min 
[1210000], rate=31172.18/min 
[1220000], rate=31335.62/min 
[1230000], rate=31511.53/min 
[1240000], rate=31485.40/min 
[1250000], rate=31632.22/min 
[1260000], rate=31778.06/min 
[1270000], rate=31896.19/min 
[1280000], rate=32040.05/min 
[1290000], rate=32169.58/min 
[1300000], rate=32338.31/min 
[1310000], rate=32506.20/min 
[1320000], rate=32659.79/min 
[1330000], rate=32853.03/min 
[1340000], rate=33045.62/min 
[1350000], rate=33196.72/min 
[1360000], rate=33360.59/min 
[1370000], rate=33509.99/min 
[1380000], rate=33672.22/min 
[1390000], rate=33778.86/min 
[1400000], rate=33775.63/min 
[1410000], rate=33799.44/min 
[1420000], rate=33809.52/min 
[1430000], rate=33792.83/min 
[1440000], rate=33789.60/min 
[1450000], rate=33799.53/min 
[1460000], rate=33887.81/min 
[1470000], rate=33936.13/min 
[1480000], rate=33996.94/min 
[1490000], rate=34044.17/min 
[1500000], rate=34129.69/min 
[1510000], rate=34214.50/min 
[1520000], rate=34311.51/min 
[1530000], rate=34407.80/min 
[1540000], rate=34529.15/min 
[1550000], rate=34649.78/min 
[1560000], rate=34782.61/min 
[1570000], rate=34901.82/min 
[1580000], rate=35046.21/min 
[1590000], rate=35176.99/min 
[1600000], rate=35320.09/min 
[1610000], rate=35371.66/min 
[1620000], rate=35487.40/min 
[1630000], rate=35628.42/min 
[1640000], rate=35833.94/min 
[1650000], rate=36000.00/min 
[1660000], rate=36152.45/min 
[1670000], rate=36317.51/min 
[1680000], rate=36482.08/min 
[1690000], rate=36659.44/min 
[1700000], rate=36849.71/min 
[1710000], rate=36999.64/min 
[1720000], rate=37149.03/min 
[1730000], rate=37311.29/min 
[1740000], rate=37473.08/min 
[1750000], rate=37634.41/min 
[1760000], rate=37822.35/min 
[1770000], rate=37996.42/min 
[1780000], rate=38129.24/min 
[1790000], rate=38275.12/min 
[1800000], rate=38434.16/min 
[1810000], rate=38592.75/min 
[1820000], rate=38778.41/min 
[1830000], rate=38963.80/min 
[1840000], rate=39107.33/min 
[1850000], rate=39236.48/min 
[1860000], rate=39406.78/min 
[1870000], rate=39548.82/min 
[1880000], rate=39732.30/min 
[1890000], rate=39929.58/min 
[1900000], rate=40070.30/min 
[1910000], rate=40210.53/min 
[1920000], rate=40364.40/min 
[1930000], rate=40503.67/min 
[1940000], rate=40656.65/min 
[1950000], rate=40794.98/min 
[1960000], rate=40918.58/min 
[1970000], rate=41055.92/min 
[1980000], rate=41164.24/min 
[1990000], rate=41286.31/min 
[2000000], rate=41407.87/min 
[2010000], rate=41514.63/min 
[2020000], rate=41635.18/min 
[2030000], rate=41655.27/min 
[2040000], rate=41660.99/min 
[2050000], rate=41666.67/min 
[2060000], rate=41686.34/min 
[2070000], rate=41677.85/min 
[2080000], rate=41683.37/min 
[2090000], rate=41744.34/min 
[2100000], rate=41791.04/min 
[2110000], rate=41727.09/min 
[2120000], rate=41527.91/min 
[2130000], rate=41252.42/min 
[2140000], rate=41272.90/min 
[2150000], rate=41346.15/min 
[2160000], rate=41418.98/min 
[2170000], rate=41504.62/min 
[2180000], rate=41589.83/min 
[2190000], rate=41687.82/min 
[2200000], rate=41772.15/min 
[2210000], rate=41869.28/min 
[2220000], rate=41965.97/min 
[2230000], rate=42062.24/min 
[2240000], rate=42171.32/min 
[2250000], rate=42333.02/min 
[2260000], rate=42454.60/min 
[2270000], rate=42549.20/min 
[2280000], rate=42643.39/min 
[2290000], rate=42750.47/min 
[2300000], rate=42857.14/min 
[2310000], rate=42963.42/min 
[2320000], rate=43055.99/min 
[2330000], rate=43161.47/min 
[2340000], rate=43266.56/min 
[2350000], rate=43371.27/min 
[2360000], rate=43462.25/min 
[2370000], rate=43486.24/min 
[2380000], rate=43510.05/min 
[2390000], rate=43533.70/min 
[2400000], rate=43596.73/min 
[2410000], rate=43659.42/min 
[2420000], rate=43695.46/min 
[2430000], rate=43744.37/min 
[2440000], rate=43779.90/min 
[2450000], rate=43841.34/min 
[2460000], rate=43915.50/min 
[2470000], rate=43976.26/min 
[2480000], rate=44036.70/min 
[2490000], rate=44109.83/min 
[2500000], rate=44195.64/min 
[2510000], rate=44281.09/min 
[2520000], rate=44366.20/min 
[2530000], rate=44490.04/min 
[2540000], rate=44626.65/min 
[2550000], rate=44723.76/min 
[2560000], rate=44833.63/min 
[2570000], rate=44930.07/min 
[2580000], rate=45026.18/min 
[2590000], rate=45121.95/min -building interval tree based on /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=20000.00/min 
[20000], rate=27272.73/min 
[30000], rate=32727.27/min 
[40000], rate=33333.33/min 
[50000], rate=37500.00/min 
[60000], rate=37500.00/min 
[70000], rate=34146.34/min 
[80000], rate=33802.82/min 
[90000], rate=33540.37/min 
[100000], rate=35087.72/min 
[110000], rate=36263.74/min 
[120000], rate=37500.00/min 
[130000], rate=38235.29/min 
[140000], rate=39436.62/min 
[150000], rate=40358.74/min 
[160000], rate=40506.33/min 
[170000], rate=41129.03/min 
[180000], rate=42687.75/min 
[190000], rate=45059.29/min 
[200000], rate=47430.83/min 
[210000], rate=49802.37/min 
[220000], rate=51361.87/min 
[230000], rate=52873.56/min 
[240000], rate=54545.45/min 
[250000], rate=55350.55/min 
[260000], rate=56521.74/min 
[270000], rate=58695.65/min 
[280000], rate=60215.05/min 
[290000], rate=61484.10/min 
[300000], rate=62283.74/min 
[310000], rate=63050.85/min 
[320000], rate=64646.46/min 
[330000], rate=65780.73/min 
[340000], rate=66885.25/min 
[350000], rate=67524.12/min 
[360000], rate=67289.72/min 
[370000], rate=64723.03/min 
[380000], rate=59842.52/min 
[390000], rate=58500.00/min 
[400000], rate=57416.27/min 
[410000], rate=56292.91/min 
[420000], rate=56000.00/min 
[430000], rate=54661.02/min 
[440000], rate=53012.05/min 
[450000], rate=53045.19/min 
[460000], rate=53076.92/min 
[470000], rate=51553.93/min 
[480000], rate=51891.89/min 
[490000], rate=52220.25/min 
[500000], rate=52539.40/min 
[510000], rate=52941.18/min 
[520000], rate=53333.33/min 
[530000], rate=53625.63/min 
[540000], rate=54000.00/min 
[550000], rate=54545.45/min 
[560000], rate=55081.97/min 
[570000], rate=55429.50/min 
[580000], rate=55858.75/min 
[590000], rate=55660.38/min 
[600000], rate=53491.83/min 
[610000], rate=52136.75/min 
[620000], rate=51381.22/min 
[630000], rate=48152.87/min 
[640000], rate=47880.30/min 
[650000], rate=47619.05/min 
[660000], rate=47368.42/min 
[670000], rate=47183.10/min 
[680000], rate=47058.82/min 
[690000], rate=47098.98/min 
[700000], rate=45701.85/min 
[710000], rate=45174.97/min 
[720000], rate=45046.92/min 
[730000], rate=44197.78/min 
[740000], rate=44047.62/min 
[750000], rate=44031.31/min 
[760000], rate=43100.19/min 
[770000], rate=43137.25/min 
[780000], rate=43213.30/min 
[790000], rate=43248.18/min 
[800000], rate=43360.43/min 
[810000], rate=43431.64/min 
[820000], rate=43501.33/min 
[830000], rate=43607.71/min 
[840000], rate=43712.06/min 
[850000], rate=43776.82/min 
[860000], rate=43914.89/min 
[870000], rate=43976.41/min 
[880000], rate=44110.28/min 
[890000], rate=44168.73/min 
[900000], rate=44226.04/min 
[910000], rate=44390.24/min 
[920000], rate=44552.06/min 
[930000], rate=44604.32/min 
[940000], rate=44797.46/min 
[950000], rate=44846.58/min 
[960000], rate=44859.81/min 
[970000], rate=44942.08/min 
[980000], rate=45057.47/min 
[990000], rate=45239.91/min 
[1000000], rate=45317.22/min 
[1010000], rate=45393.26/min 
[1020000], rate=45501.86/min 
[1030000], rate=45608.86/min 
[1040000], rate=45714.29/min 
[1050000], rate=45751.63/min 
[1060000], rate=45854.36/min 
[1070000], rate=45955.62/min 
[1080000], rate=46088.19/min 
[1090000], rate=46186.44/min 
[1100000], rate=46315.79/min 
[1110000], rate=46443.51/min 
[1120000], rate=46601.94/min 
[1130000], rate=46758.62/min 
[1140000], rate=46945.78/min 
[1150000], rate=47131.15/min 
[1160000], rate=47346.94/min 
[1170000], rate=47528.77/min 
[1180000], rate=47612.64/min 
[1190000], rate=47191.01/min 
[1200000], rate=46722.91/min 
[1210000], rate=46330.57/min 
[1220000], rate=45750.00/min 
[1230000], rate=45415.38/min 
[1240000], rate=44927.54/min 
[1250000], rate=44696.07/min 
[1260000], rate=44081.63/min 
[1270000], rate=43717.73/min 
[1280000], rate=43414.36/min 
[1290000], rate=42480.79/min 
[1300000], rate=41248.02/min 
[1310000], rate=40000.00/min 
[1320000], rate=39659.49/min 
[1330000], rate=39426.88/min 
[1340000], rate=39219.51/min 
[1350000], rate=39017.34/min 
[1360000], rate=38857.14/min 
[1370000], rate=38179.28/min 
[1380000], rate=37551.02/min 
[1390000], rate=37315.44/min 
[1400000], rate=37250.55/min 
[1410000], rate=37203.17/min 
[1420000], rate=37172.77/min 
[1430000], rate=37126.78/min 
[1440000], rate=37113.40/min 
[1450000], rate=37116.04/min 
[1460000], rate=37134.38/min 
[1470000], rate=37168.14/min 
[1480000], rate=37170.36/min 
[1490000], rate=37188.02/min 
[1500000], rate=37220.84/min 
[1510000], rate=37268.61/min 
[1520000], rate=37270.13/min 
[1530000], rate=37271.62/min 
[1540000], rate=37318.26/min 
[1550000], rate=37349.40/min 
[1560000], rate=37425.03/min 
[1570000], rate=37500.00/min 
[1580000], rate=37574.32/min 
[1590000], rate=37633.14/min 
[1600000], rate=37706.21/min 
[1610000], rate=37793.43/min 
[1620000], rate=37703.65/min 
[1630000], rate=37644.34/min 
[1640000], rate=37759.02/min 
[1650000], rate=37844.04/min 
[1660000], rate=37913.97/min 
[1670000], rate=38026.57/min 
[1680000], rate=38109.64/min 
[1690000], rate=38177.71/min 
[1700000], rate=38245.22/min 
[1710000], rate=38255.03/min 
[1720000], rate=38321.57/min 
[1730000], rate=38415.99/min 
[1740000], rate=38481.39/min 
[1750000], rate=38532.11/min 
[1760000], rate=38582.39/min 
[1770000], rate=38660.36/min 
[1780000], rate=38681.64/min 
[1790000], rate=38744.59/min 
[1800000], rate=38793.10/min 
[1810000], rate=38841.20/min 
[1820000], rate=38930.48/min 
[1830000], rate=38991.48/min 
[1840000], rate=39052.00/min 
[1850000], rate=38906.41/min 
[1860000], rate=38669.44/min 
[1870000], rate=38450.99/min 
[1880000], rate=38146.77/min 
[1890000], rate=38130.46/min 
[1900000], rate=38165.38/min 
[1910000], rate=38073.09/min 
[1920000], rate=38158.33/min 
[1930000], rate=38205.21/min 
[1940000], rate=38226.60/min 
[1950000], rate=38285.34/min 
[1960000], rate=38356.16/min 
[1970000], rate=38451.53/min 
[1980000], rate=38521.40/min 
[1990000], rate=38603.30/min 
[2000000], rate=38697.19/min 
[2010000], rate=38803.09/min 
[2020000], rate=38896.02/min 
[2030000], rate=38988.48/min 
[2040000], rate=39092.94/min 
[2050000], rate=39184.45/min 
[2060000], rate=39287.98/min 
[2070000], rate=39391.06/min 
[2080000], rate=39506.17/min 
[2090000], rate=39620.85/min 
[2100000], rate=39735.10/min 
[2110000], rate=39836.38/min 
[2120000], rate=39949.75/min 
[2130000], rate=40050.14/min 
[2140000], rate=40162.65/min 
[2150000], rate=40274.74/min 
[2160000], rate=40386.41/min 
[2170000], rate=40497.67/min 
[2180000], rate=40558.14/min 
[2190000], rate=40643.37/min 
[2200000], rate=40791.10/min 
[2210000], rate=40888.07/min 
[2220000], rate=40972.01/min 
[2230000], rate=41068.14/min 
[2240000], rate=41151.26/min 
[2250000], rate=41259.17/min 
[2260000], rate=41366.69/min 
[2270000], rate=41473.81/min 
[2280000], rate=41316.82/min 
[2290000], rate=41088.52/min 
[2300000], rate=40913.13/min 
[2310000], rate=40740.74/min 
[2320000], rate=40618.62/min 
[2330000], rate=40486.53/min 
[2340000], rate=40391.25/min 
[2350000], rate=40297.23/min 
[2360000], rate=40193.02/min 
[2370000], rate=40067.62/min 
[2380000], rate=40000.00/min 
[2390000], rate=39933.17/min 
[2400000], rate=39878.15/min 
[2410000], rate=39823.74/min 
[2420000], rate=39780.82/min 
[2430000], rate=39738.35/min 
[2440000], rate=39739.41/min 
[2450000], rate=39718.99/min 
[2460000], rate=39709.44/min 
[2470000], rate=39710.61/min 
[2480000], rate=39743.59/min 
[2490000], rate=39734.04/min 
[2500000], rate=39766.70/min 
[2510000], rate=39778.13/min 
[2520000], rate=39799.95/min 
[2530000], rate=39811.17/min 
[2540000], rate=39822.32/min 
[2550000], rate=39854.13/min 
[2560000], rate=39875.39/min 
[2570000], rate=39906.83/min 
[2580000], rate=39927.78/min -building interval tree based on /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=40000.00/min 
[20000], rate=44444.44/min 
[30000], rate=56250.00/min 
[40000], rate=58536.59/min 
[50000], rate=66666.67/min 
[60000], rate=75000.00/min 
[70000], rate=85714.29/min 
[80000], rate=84210.53/min 
[90000], rate=79411.76/min 
[100000], rate=86956.52/min 
[110000], rate=94285.71/min 
[120000], rate=102857.14/min 
[130000], rate=105405.41/min 
[140000], rate=96551.72/min 
[150000], rate=95744.68/min 
[160000], rate=95049.50/min 
[170000], rate=94444.44/min 
[180000], rate=95575.22/min 
[190000], rate=99130.43/min 
[200000], rate=103448.28/min 
[210000], rate=105882.35/min 
[220000], rate=107317.07/min 
[230000], rate=111290.32/min 
[240000], rate=115200.00/min 
[250000], rate=120000.00/min 
[260000], rate=123809.52/min 
[270000], rate=120000.00/min 
[280000], rate=119148.94/min 
[290000], rate=117567.57/min 
[300000], rate=120000.00/min 
[310000], rate=118471.34/min 
[320000], rate=119254.66/min 
[330000], rate=122981.37/min 
[340000], rate=120710.06/min 
[350000], rate=120000.00/min 
[360000], rate=122727.27/min 
[370000], rate=120652.17/min 
[380000], rate=120634.92/min 
[390000], rate=117587.94/min 
[400000], rate=117073.17/min 
[410000], rate=113364.06/min 
[420000], rate=113004.48/min 
[430000], rate=115695.07/min 
[440000], rate=113793.10/min 
[450000], rate=111570.25/min 
[460000], rate=113114.75/min 
[470000], rate=95593.22/min 
[480000], rate=74418.60/min 
[490000], rate=60743.80/min 
[500000], rate=53475.94/min 
[510000], rate=49594.81/min 
[520000], rate=46706.59/min 
[530000], rate=42741.94/min 
[540000], rate=40652.45/min 
[550000], rate=36954.09/min 
[560000], rate=34181.08/min 
[570000], rate=33333.33/min 
[580000], rate=31693.99/min 
[590000], rate=31244.48/min 
[600000], rate=30050.08/min 
[610000], rate=28132.21/min 
[620000], rate=27352.94/min 
[630000], rate=26526.32/min 
[640000], rate=25329.82/min 
[650000], rate=24872.45/min 
[660000], rate=24719.10/min 
[670000], rate=24542.12/min 
[680000], rate=24014.13/min 
[690000], rate=23806.79/min 
[700000], rate=23635.34/min 
[710000], rate=23548.92/min 
[720000], rate=23300.97/min 
[730000], rate=23186.87/min 
[740000], rate=23076.92/min 
[750000], rate=22924.10/min 
[760000], rate=22834.25/min 
[770000], rate=22792.30/min 
[780000], rate=22328.24/min 
[790000], rate=22159.89/min 
[800000], rate=22079.12/min 
[810000], rate=22141.23/min 
[820000], rate=22192.15/min 
[830000], rate=22261.96/min 
[840000], rate=22310.76/min 
[850000], rate=22358.61/min 
[860000], rate=22270.18/min 
[870000], rate=22298.16/min 
[880000], rate=22391.86/min 
[890000], rate=22512.65/min 
[900000], rate=22613.07/min 
[910000], rate=22721.60/min 
[920000], rate=22828.78/min 
[930000], rate=22897.00/min 
[940000], rate=22982.89/min 
[950000], rate=23067.58/min 
[960000], rate=23132.53/min 
[970000], rate=23205.74/min 
[980000], rate=23296.35/min 
[990000], rate=23358.24/min 
[1000000], rate=23373.59/min 
[1010000], rate=23236.20/min 
[1020000], rate=23243.45/min 
[1030000], rate=23338.37/min 
[1040000], rate=23441.02/min 
[1050000], rate=23481.18/min 
[1060000], rate=23373.76/min 
[1070000], rate=23456.34/min 
[1080000], rate=23572.21/min 
[1090000], rate=23704.24/min 
[1100000], rate=23835.32/min 
[1110000], rate=23965.46/min 
[1120000], rate=24077.39/min 
[1130000], rate=24222.94/min 
[1140000], rate=24358.97/min 
[1150000], rate=24502.84/min 
[1160000], rate=24645.89/min 
[1170000], rate=24796.89/min 
[1180000], rate=24947.15/min 
[1190000], rate=25096.66/min 
[1200000], rate=25245.44/min 
[1210000], rate=25402.38/min 
[1220000], rate=25549.74/min 
[1230000], rate=25714.29/min 
[1240000], rate=25788.56/min 
[1250000], rate=25853.15/min 
[1260000], rate=25934.82/min 
[1270000], rate=26024.59/min 
[1280000], rate=26113.57/min 
[1290000], rate=26219.51/min 
[1300000], rate=26342.45/min 
[1310000], rate=26464.65/min 
[1320000], rate=26577.18/min 
[1330000], rate=26600.00/min 
[1340000], rate=26552.18/min 
[1350000], rate=26671.06/min 
[1360000], rate=26780.44/min 
[1370000], rate=26915.52/min 
[1380000], rate=27049.98/min 
[1390000], rate=27166.12/min 
[1400000], rate=27290.45/min 
[1410000], rate=27414.13/min 
[1420000], rate=27501.61/min 
[1430000], rate=27641.75/min 
[1440000], rate=27772.42/min 
[1450000], rate=27893.56/min 
[1460000], rate=28032.00/min 
[1470000], rate=28169.91/min 
[1480000], rate=28325.36/min 
[1490000], rate=28471.34/min 
[1500000], rate=28607.76/min 
[1510000], rate=28743.65/min 
[1520000], rate=28652.21/min 
[1530000], rate=28509.32/min 
[1540000], rate=28422.02/min 
[1550000], rate=28319.12/min 
[1560000], rate=28175.80/min 
[1570000], rate=28144.61/min 
[1580000], rate=28072.25/min 
[1590000], rate=28001.17/min 
[1600000], rate=27972.03/min 
[1610000], rate=27951.39/min 
[1620000], rate=27931.03/min 
[1630000], rate=27934.88/min 
[1640000], rate=27938.67/min 
[1650000], rate=27966.10/min 
[1660000], rate=28009.00/min 
[1670000], rate=28027.97/min 
[1680000], rate=28054.55/min 
[1690000], rate=28112.00/min 
[1700000], rate=28161.24/min 
[1710000], rate=28217.82/min 
[1720000], rate=28297.23/min 
[1730000], rate=28376.16/min 
[1740000], rate=28439.12/min 
[1750000], rate=28509.37/min 
[1760000], rate=28579.16/min 
[1770000], rate=28656.23/min 
[1780000], rate=28725.12/min 
[1790000], rate=28801.29/min 
[1800000], rate=28884.73/min 
[1810000], rate=28960.00/min 
[1820000], rate=29042.55/min 
[1830000], rate=29116.95/min 
[1840000], rate=29198.62/min 
[1850000], rate=29287.60/min 
[1860000], rate=29376.15/min 
[1870000], rate=29472.03/min 
[1880000], rate=29559.75/min 
[1890000], rate=29654.81/min 
[1900000], rate=29757.24/min 
[1910000], rate=29859.30/min 
[1920000], rate=29968.78/min 
[1930000], rate=30077.92/min 
[1940000], rate=30186.72/min 
[1950000], rate=30295.18/min 
[1960000], rate=30403.31/min 
[1970000], rate=30511.10/min 
[1980000], rate=30594.90/min 
[1990000], rate=30623.24/min 
[2000000], rate=30651.34/min 
[2010000], rate=30671.41/min 
[2020000], rate=30699.09/min 
[2030000], rate=30734.29/min 
[2040000], rate=30792.45/min 
[2050000], rate=30850.26/min 
[2060000], rate=30907.73/min 
[2070000], rate=30972.57/min 
[2080000], rate=31037.06/min 
[2090000], rate=31101.19/min 
[2100000], rate=31164.98/min 
[2110000], rate=31213.02/min 
[2120000], rate=31283.82/min 
[2130000], rate=31354.27/min 
[2140000], rate=31424.38/min 
[2150000], rate=31486.45/min 
[2160000], rate=31548.20/min 
[2170000], rate=31609.61/min 
[2180000], rate=31678.37/min 
[2190000], rate=31746.80/min 
[2200000], rate=31814.90/min 
[2210000], rate=31882.66/min 
[2220000], rate=31973.12/min 
[2230000], rate=32055.58/min 
[2240000], rate=32145.42/min 
[2250000], rate=32242.66/min 
[2260000], rate=32331.90/min 
[2270000], rate=32428.57/min 
[2280000], rate=32524.96/min 
[2290000], rate=32621.08/min 
[2300000], rate=32716.93/min 
[2310000], rate=32820.27/min 
[2320000], rate=32915.58/min 
[2330000], rate=33010.63/min 
[2340000], rate=33113.21/min 
[2350000], rate=33215.55/min 
[2360000], rate=33325.49/min 
[2370000], rate=33435.22/min 
[2380000], rate=33536.87/min 
[2390000], rate=33638.28/min 
[2400000], rate=33731.55/min 
[2410000], rate=33816.65/min 
[2420000], rate=33901.47/min 
[2430000], rate=33993.94/min 
[2440000], rate=34086.15/min 
[2450000], rate=34178.10/min 
[2460000], rate=34277.75/min 
[2470000], rate=34377.17/min 
[2480000], rate=34476.37/min 
[2490000], rate=34583.33/min 
[2500000], rate=34674.06/min 
[2510000], rate=34772.57/min 
[2520000], rate=34870.85/min 
[2530000], rate=34936.71/min 
[2540000], rate=34994.26/min 
[2550000], rate=35059.58/min 
[2560000], rate=35116.60/min 
[2570000], rate=35181.38/min 
[2580000], rate=35245.90/min 
[2590000], rate=35318.18/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 24000000.00 reads per min processed...  
 15000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 8400000.00 reads per min processed...  
 8000000.00 reads per min processed...  
 7714285.71 reads per min processed...  
 6666666.67 reads per min processed...  
 6600000.00 reads per min processed...  
 6545454.55 reads per min processed...  
 6500000.00 reads per min processed...  
 6461538.46 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5684210.53 reads per min processed...  
 5700000.00 reads per min processed...  
 5714285.71 reads per min processed...  
 5727272.73 reads per min processed...  
 5739130.43 reads per min processed...  
 5520000.00 reads per min processed...  
 5333333.33 reads per min processed...  
 5357142.86 reads per min processed...  
 5200000.00 reads per min processed...  
 5225806.45 reads per min processed...  
 5250000.00 reads per min processed...  
 5117647.06 reads per min processed...  
 5142857.14 reads per min processed...  
 5166666.67 reads per min processed...  
 5052631.58 reads per min processed...  
 5076923.08 reads per min processed...  
 5100000.00 reads per min processed...  
 5121951.22 reads per min processed...  
 5142857.14 reads per min processed...  
 5162790.70 reads per min processed...  
 5066666.67 reads per min processed...  
 5086956.52 reads per min processed...  
 5106382.98 reads per min processed...  
 5125000.00 reads per min processed...  
 5142857.14 reads per min processed...  
 5160000.00 reads per min processed...  
 5176470.59 reads per min processed...  
 5192307.69 reads per min processed...  
 5111111.11 reads per min processed...  
 5127272.73 reads per min processed...  
 5142857.14 reads per min processed...  
 5157894.74 reads per min processed...  
 5172413.79 reads per min processed...  
 5186440.68 reads per min processed...  
 5200000.00 reads per min processed...  
 5213114.75 reads per min processed...  
 5311475.41 reads per min processed...  
 5409836.07 reads per min processed...  
 5419354.84 reads per min processed...  
 5343750.00 reads per min processed...  
 5353846.15 reads per min processed...  
 5363636.36 reads per min processed...  
 5373134.33 reads per min processed...  
 5382352.94 reads per min processed...  
 5314285.71 reads per min processed...  
 5323943.66 reads per min processed...  
 5333333.33 reads per min processed...  
 5342465.75 reads per min processed...  
 5351351.35 reads per min processed...  
 5360000.00 reads per min processed...  
 5298701.30 reads per min processed...  
 5307692.31 reads per min processed...  
 5316455.70 reads per min processed...  
 5325000.00 reads per min processed...  
 5268292.68 reads per min processed...  
 5277108.43 reads per min processed...  
 5285714.29 reads per min processed...  
 5294117.65 reads per min processed...  
 5302325.58 reads per min processed...  
 5250000.00 reads per min processed...  
 5258426.97 reads per min processed...  
 5266666.67 reads per min processed...  
 5274725.27 reads per min processed...  
 5282608.70 reads per min processed...  
 5290322.58 reads per min processed...  
 5242105.26 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.509zlXEi2u/659_cWx-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -220749.529801
EM: Round [1] log likelihood: -220608.599896
EM: Round [2] log likelihood: -220560.229175
EM: Round [3] log likelihood: -220538.066419
EM: Round [4] log likelihood: -220526.398926
EM: Round [5] log likelihood: -220519.749469
EM: Round [6] log likelihood: -220515.740641
EM: Round [7] log likelihood: -220513.206280
EM: Round [8] log likelihood: -220511.535291
EM: Round [9] log likelihood: -220510.392622
EM: Round [10] log likelihood: -220509.586867
EM: Round [11] log likelihood: -220509.004127
EM: Round [12] log likelihood: -220508.573879
EM: Round [13] log likelihood: -220508.250811
EM: Round [14] log likelihood: -220508.004822
EM: Round [15] log likelihood: -220507.815327
EM: Round [16] log likelihood: -220507.667897
EM: Round [17] log likelihood: -220507.552201
EM: Round [18] log likelihood: -220507.460715
EM: Round [19] log likelihood: -220507.387872
EM: Round [20] log likelihood: -220507.329505
EM: Round [21] log likelihood: -220507.282458
EM: Round [22] log likelihood: -220507.244323
EM: Round [23] log likelihood: -220507.213243
EM: Round [24] log likelihood: -220507.187780
EM: Round [25] log likelihood: -220507.166809
EM: Round [26] log likelihood: -220507.149451
EM: Round [27] log likelihood: -220507.135009
EM: Round [28] log likelihood: -220507.122932
EM: Round [29] log likelihood: -220507.112782
EM: Round [30] log likelihood: -220507.104208
EM: Round [31] log likelihood: -220507.096928
EM: Round [32] log likelihood: -220507.090716
EM: Round [33] log likelihood: -220507.085389
EM: Round [34] log likelihood: -220507.080797
EM: Round [35] log likelihood: -220507.076820
EM: Round [36] log likelihood: -220507.073357
EM: Round [37] log likelihood: -220507.070329
EM: Round [38] log likelihood: -220507.067669
EM: Round [39] log likelihood: -220507.065320
EM: Round [40] log likelihood: -220507.063238
EM: Round [41] log likelihood: -220507.061384
EM: Round [42] log likelihood: -220507.059726
EM: Round [43] log likelihood: -220507.058238
EM: Round [44] log likelihood: -220507.056897
EM: Round [45] log likelihood: -220507.055684
EM: Round [46] log likelihood: -220507.054583
EM: Round [47] log likelihood: -220507.053581
EM: Round [48] log likelihood: -220507.052666
EM: Round [49] log likelihood: -220507.051828
EM: Round [50] log likelihood: -220507.051058
EM: Round [51] log likelihood: -220507.050348
EM: Round [52] log likelihood: -220507.049693
EM: Round [53] log likelihood: -220507.049087
EM: Round [54] log likelihood: -220507.048524
EM: Round [55] log likelihood: -220507.048001
EM: Round [56] log likelihood: -220507.047513
EM: Round [57] log likelihood: -220507.047058
EM: Round [58] log likelihood: -220507.046633
EM: Round [59] log likelihood: -220507.046234
EM: Round [60] log likelihood: -220507.045860
EM: Round [61] log likelihood: -220507.045509
EM: Round [62] log likelihood: -220507.045178
EM: Round [63] log likelihood: -220507.044866
EM: Round [64] log likelihood: -220507.044572
EM: Round [65] log likelihood: -220507.044293
EM: Round [66] log likelihood: -220507.044030
EM: Round [67] log likelihood: -220507.043780
EM: Round [68] log likelihood: -220507.043544
EM: Round [69] log likelihood: -220507.043319
EM: Round [70] log likelihood: -220507.043105
EM: Round [71] log likelihood: -220507.042902
EM: Round [72] log likelihood: -220507.042708
EM: Round [73] log likelihood: -220507.042523
EM: Round [74] log likelihood: -220507.042347
EM: Round [75] log likelihood: -220507.042179
EM: Round [76] log likelihood: -220507.042018
EM: Round [77] log likelihood: -220507.041864
EM: Round [78] log likelihood: -220507.041717
EM: Round [79] log likelihood: -220507.041576
EM: Round [80] log likelihood: -220507.041440
EM: Round [81] log likelihood: -220507.041310
EM: Round [82] log likelihood: -220507.041186
EM: Round [83] log likelihood: -220507.041066
EM: Round [84] log likelihood: -220507.040951
EM: Round [85] log likelihood: -220507.040840
EM: Round [86] log likelihood: -220507.040733
EM: Round [87] log likelihood: -220507.040631
EM: Round [88] log likelihood: -220507.040532
EM: Stopping iterations at round 88 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -220451.248880
EM: Round [1] log likelihood: -220350.595500
EM: Round [2] log likelihood: -220316.470850
EM: Round [3] log likelihood: -220300.933324
EM: Round [4] log likelihood: -220292.798434
EM: Round [5] log likelihood: -220288.191540
EM: Round [6] log likelihood: -220285.432302
EM: Round [7] log likelihood: -220283.698452
EM: Round [8] log likelihood: -220282.561047
EM: Round [9] log likelihood: -220281.786313
EM: Round [10] log likelihood: -220281.241605
EM: Round [11] log likelihood: -220280.848535
EM: Round [12] log likelihood: -220280.558866
EM: Round [13] log likelihood: -220280.341763
EM: Round [14] log likelihood: -220280.176810
EM: Round [15] log likelihood: -220280.050075
EM: Round [16] log likelihood: -220279.951798
EM: Round [17] log likelihood: -220279.874992
EM: Round [18] log likelihood: -220279.814560
EM: Round [19] log likelihood: -220279.766729
EM: Round [20] log likelihood: -220279.728672
EM: Round [21] log likelihood: -220279.698244
EM: Round [22] log likelihood: -220279.673809
EM: Round [23] log likelihood: -220279.654104
EM: Round [24] log likelihood: -220279.638149
EM: Round [25] log likelihood: -220279.625181
EM: Round [26] log likelihood: -220279.614601
EM: Round [27] log likelihood: -220279.605937
EM: Round [28] log likelihood: -220279.598816
EM: Round [29] log likelihood: -220279.592939
EM: Round [30] log likelihood: -220279.588072
EM: Round [31] log likelihood: -220279.584025
EM: Round [32] log likelihood: -220279.580646
EM: Round [33] log likelihood: -220279.577813
EM: Round [34] log likelihood: -220279.575427
EM: Round [35] log likelihood: -220279.573409
EM: Round [36] log likelihood: -220279.571694
EM: Round [37] log likelihood: -220279.570229
EM: Round [38] log likelihood: -220279.568972
EM: Round [39] log likelihood: -220279.567888
EM: Round [40] log likelihood: -220279.566948
EM: Round [41] log likelihood: -220279.566128
EM: Round [42] log likelihood: -220279.565409
EM: Round [43] log likelihood: -220279.564775
EM: Round [44] log likelihood: -220279.564213
EM: Round [45] log likelihood: -220279.563712
EM: Round [46] log likelihood: -220279.563262
EM: Round [47] log likelihood: -220279.562857
EM: Round [48] log likelihood: -220279.562490
EM: Round [49] log likelihood: -220279.562155
EM: Round [50] log likelihood: -220279.561848
EM: Round [51] log likelihood: -220279.561566
EM: Round [52] log likelihood: -220279.561305
EM: Round [53] log likelihood: -220279.561062
EM: Round [54] log likelihood: -220279.560836
EM: Round [55] log likelihood: -220279.560624
EM: Round [56] log likelihood: -220279.560425
EM: Round [57] log likelihood: -220279.560238
EM: Round [58] log likelihood: -220279.560060
EM: Round [59] log likelihood: -220279.559892
EM: Round [60] log likelihood: -220279.559731
EM: Round [61] log likelihood: -220279.559579
EM: Round [62] log likelihood: -220279.559433
EM: Round [63] log likelihood: -220279.559293
EM: Round [64] log likelihood: -220279.559159
EM: Round [65] log likelihood: -220279.559030
EM: Round [66] log likelihood: -220279.558906
EM: Round [67] log likelihood: -220279.558786
EM: Round [68] log likelihood: -220279.558671
EM: Round [69] log likelihood: -220279.558560
EM: Round [70] log likelihood: -220279.558452
EM: Round [71] log likelihood: -220279.558347
EM: Round [72] log likelihood: -220279.558246
EM: Round [73] log likelihood: -220279.558148
EM: Stopping iterations at round 73 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 292881117 > /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir > /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir --annotate /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir
-done, see /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1965, filtered: 10005)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.509zlXEi2u/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.509zlXEi2u/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000278399.1]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000246323.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [IGL-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000204622.11]
WARNING, no entry stored in dbm for [ENSG00000235290.1]
WARNING, no entry stored in dbm for [ENSG00000231259.5]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000259755.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000200792.1]
WARNING, no entry stored in dbm for [ENSG00000256195.3]
WARNING, no entry stored in dbm for [ENSG00000237424.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000267698.1]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000271581.1]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000242294.6]
WARNING, no entry stored in dbm for [ENSG00000237037.9]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000201428.1]
WARNING, no entry stored in dbm for [ENSG00000200488.1]
WARNING, no entry stored in dbm for [ENSG00000202538.1]
WARNING, no entry stored in dbm for [ENSG00000200795.1]
WARNING, no entry stored in dbm for [ENSG00000283240.1]
WARNING, no entry stored in dbm for [ENSG00000229891.2]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000231203.1]
WARNING, no entry stored in dbm for [ENSG00000229320.3]
WARNING, no entry stored in dbm for [ENSG00000237978.6]
WARNING, no entry stored in dbm for [ENSG00000216817.1]
WARNING, no entry stored in dbm for [ENSG00000253552.8]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000268869.6]
WARNING, no entry stored in dbm for [ENSG00000225988.1]
WARNING, no entry stored in dbm for [ENSG00000271162.1]
WARNING, no entry stored in dbm for [ENSG00000236991.6]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000272734.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000204650.14]
WARNING, no entry stored in dbm for [ENSG00000258705.2]
WARNING, no entry stored in dbm for [ENSG00000277089.4]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000249149.2]
WARNING, no entry stored in dbm for [ENSG00000288604.1]
WARNING, no entry stored in dbm for [ENSG00000283132.1]
WARNING, no entry stored in dbm for [ENSG00000279516.2]
WARNING, no entry stored in dbm for [ENSG00000215067.10]
WARNING, no entry stored in dbm for [ENSG00000283132.1]
WARNING, no entry stored in dbm for [ENSG00000279516.2]
WARNING, no entry stored in dbm for [ENSG00000241350.1]
WARNING, no entry stored in dbm for [ENSG00000237004.4]
WARNING, no entry stored in dbm for [ENSG00000233782.1]
WARNING, no entry stored in dbm for [ENSG00000268266.1]
WARNING, no entry stored in dbm for [ENSG00000228303.1]
WARNING, no entry stored in dbm for [ENSG00000259291.2]
WARNING, no entry stored in dbm for [ENSG00000242779.7]
WARNING, no entry stored in dbm for [ENSG00000197332.9]
WARNING, no entry stored in dbm for [ENSG00000213801.4]
WARNING, no entry stored in dbm for [ENSG00000219665.8]
WARNING, no entry stored in dbm for [ENSG00000234420.7]
WARNING, no entry stored in dbm for [ENSG00000260426.1]
WARNING, no entry stored in dbm for [ENSG00000266502.1]
WARNING, no entry stored in dbm for [ENSG00000228065.11]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000227598.1]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000264112.1]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000282458.1]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000228999.4]
WARNING, no entry stored in dbm for [ENSG00000238045.9]
WARNING, no entry stored in dbm for [ENSG00000238057.10]
WARNING, no entry stored in dbm for [ENSG00000244560.7]
WARNING, no entry stored in dbm for [ENSG00000203987.3]
WARNING, no entry stored in dbm for [ENSG00000259429.5]
WARNING, no entry stored in dbm for [ENSG00000250979.1]
WARNING, no entry stored in dbm for [ENSG00000225167.1]
WARNING, no entry stored in dbm for [ENSG00000198054.12]
WARNING, no entry stored in dbm for [ENSG00000225685.1]
WARNING, no entry stored in dbm for [ENSG00000260289.2]
WARNING, no entry stored in dbm for [ENSG00000167747.15]
WARNING, no entry stored in dbm for [ENSG00000248734.2]
WARNING, no entry stored in dbm for [ENSG00000250026.5]
WARNING, no entry stored in dbm for [ENSG00000238164.6]
WARNING, no entry stored in dbm for [ENSG00000189423.13]
WARNING, no entry stored in dbm for [ENSG00000235888.3]
WARNING, no entry stored in dbm for [ENSG00000287243.2]
WARNING, no entry stored in dbm for [ENSG00000288035.1]
WARNING, no entry stored in dbm for [ENSG00000235033.7]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000238825.1]
WARNING, no entry stored in dbm for [ENSG00000239023.1]
WARNING, no entry stored in dbm for [ENSG00000239827.8]
WARNING, no entry stored in dbm for [ENSG00000227113.2]
WARNING, no entry stored in dbm for [ENSG00000280131.1]
WARNING, no entry stored in dbm for [ENSG00000225391.5]
WARNING, no entry stored in dbm for [ENSG00000237584.1]
WARNING, no entry stored in dbm for [ENSG00000106610.15]
WARNING, no entry stored in dbm for [ENSG00000198526.7]
WARNING, no entry stored in dbm for [ENSG00000227097.5]
WARNING, no entry stored in dbm for [ENSG00000250332.1]
WARNING, no entry stored in dbm for [ENSG00000269893.8]
WARNING, no entry stored in dbm for [ENSG00000203875.13]
WARNING, no entry stored in dbm for [ENSG00000175061.18]
WARNING, no entry stored in dbm for [ENSG00000232956.9]
WARNING, no entry stored in dbm for [ENSG00000260630.7]
WARNING, no entry stored in dbm for [ENSG00000248445.5]
WARNING, no entry stored in dbm for [ENSG00000247157.7]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000244306.11]
WARNING, no entry stored in dbm for [ENSG00000258186.2]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000284607.1]
WARNING, no entry stored in dbm for [ENSG00000240535.8]
WARNING, no entry stored in dbm for [ENSG00000213332.4]
WARNING, no entry stored in dbm for [ENSG00000279387.1]
WARNING, no entry stored in dbm for [ENSG00000244306.11]
WARNING, no entry stored in dbm for [ENSG00000206567.10]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000236188.1]
WARNING, no entry stored in dbm for [ENSG00000227398.4]
WARNING, no entry stored in dbm for [ENSG00000172250.16]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000196951.11]
WARNING, no entry stored in dbm for [ENSG00000227373.6]
WARNING, no entry stored in dbm for [ENSG00000267339.7]
WARNING, no entry stored in dbm for [ENSG00000242094.1]
WARNING, no entry stored in dbm for [ENSG00000228219.1]
WARNING, no entry stored in dbm for [ENSG00000235036.4]
WARNING, no entry stored in dbm for [ENSG00000259150.6]
WARNING, no entry stored in dbm for [ENSG00000229693.2]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000233071.3]
WARNING, no entry stored in dbm for [ENSG00000234771.3]
WARNING, no entry stored in dbm for [ENSG00000259011.1]
WARNING, no entry stored in dbm for [ENSG00000241318.3]
WARNING, no entry stored in dbm for [ENSG00000284523.2]
WARNING, no entry stored in dbm for [ENSG00000242071.3]
WARNING, no entry stored in dbm for [ENSG00000220370.1]
WARNING, no entry stored in dbm for [ENSG00000242834.1]
WARNING, no entry stored in dbm for [ENSG00000242071.3]
WARNING, no entry stored in dbm for [ENSG00000242390.1]
WARNING, no entry stored in dbm for [ENSG00000230383.1]
WARNING, no entry stored in dbm for [ENSG00000240540.2]
WARNING, no entry stored in dbm for [ENSG00000234648.1]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000241228.1]
WARNING, no entry stored in dbm for [ENSG00000206975.1]
WARNING, no entry stored in dbm for [ENSG00000200296.1]
WARNING, no entry stored in dbm for [ENSG00000252827.1]
WARNING, no entry stored in dbm for [ENSG00000285847.2]
WARNING, no entry stored in dbm for [ENSG00000248866.1]
WARNING, no entry stored in dbm for [ENSG00000286583.1]
WARNING, no entry stored in dbm for [ENSG00000256737.1]
WARNING, no entry stored in dbm for [ENSG00000241815.1]
WARNING, no entry stored in dbm for [ENSG00000236603.2]
WARNING, no entry stored in dbm for [ENSG00000236611.1]
WARNING, no entry stored in dbm for [ENSG00000246067.8]
WARNING, no entry stored in dbm for [ENSG00000285583.1]
WARNING, no entry stored in dbm for [ENSG00000223806.8]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000230487.8]
WARNING, no entry stored in dbm for [ENSG00000223741.1]
WARNING, no entry stored in dbm for [ENSG00000257621.8]
WARNING, no entry stored in dbm for [ENSG00000249848.1]
WARNING, no entry stored in dbm for [ENSG00000241728.5]
WARNING, no entry stored in dbm for [ENSG00000248927.1]
WARNING, no entry stored in dbm for [ENSG00000231259.5]
WARNING, no entry stored in dbm for [ENSG00000250842.1]
WARNING, no entry stored in dbm for [ENSG00000241472.7]
WARNING, no entry stored in dbm for [ENSG00000205771.6]
WARNING, no entry stored in dbm for [ENSG00000205771.6]
WARNING, no entry stored in dbm for [ENSG00000239636.1]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000269609.6]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000243554.1]
WARNING, no entry stored in dbm for [ENSG00000279175.1]
WARNING, no entry stored in dbm for [ENSG00000280262.1]
WARNING, no entry stored in dbm for [ENSG00000227418.6]
WARNING, no entry stored in dbm for [ENSG00000179818.14]
WARNING, no entry stored in dbm for [ENSG00000226567.2]
WARNING, no entry stored in dbm for [ENSG00000267058.1]
WARNING, no entry stored in dbm for [ENSG00000225885.7]
WARNING, no entry stored in dbm for [ENSG00000267719.1]
WARNING, no entry stored in dbm for [ENSG00000255545.8]
WARNING, no entry stored in dbm for [ENSG00000255493.2]
WARNING, no entry stored in dbm for [ENSG00000249419.1]
WARNING, no entry stored in dbm for [ENSG00000279917.1]
WARNING, no entry stored in dbm for [ENSG00000223482.8]
WARNING, no entry stored in dbm for [ENSG00000226328.7]
WARNING, no entry stored in dbm for [ENSG00000235148.2]
WARNING, no entry stored in dbm for [ENSG00000238002.3]
WARNING, no entry stored in dbm for [ENSG00000235820.1]
WARNING, no entry stored in dbm for [ENSG00000287656.1]
WARNING, no entry stored in dbm for [ENSG00000249738.10]
WARNING, no entry stored in dbm for [ENSG00000225465.10]
WARNING, no entry stored in dbm for [ENSG00000228623.6]
WARNING, no entry stored in dbm for [ENSG00000226891.9]
WARNING, no entry stored in dbm for [ENSG00000198496.12]
WARNING, no entry stored in dbm for [ENSG00000241361.8]
WARNING, no entry stored in dbm for [ENSG00000228323.2]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000237212.2]
WARNING, no entry stored in dbm for [ENSG00000182841.12]
WARNING, no entry stored in dbm for [ENSG00000232977.7]
WARNING, no entry stored in dbm for [ENSG00000226754.2]
WARNING, no entry stored in dbm for [ENSG00000251579.1]
WARNING, no entry stored in dbm for [ENSG00000197182.14]
WARNING, no entry stored in dbm for [ENSG00000259240.1]
WARNING, no entry stored in dbm for [ENSG00000259240.1]
WARNING, no entry stored in dbm for [ENSG00000236432.8]
WARNING, no entry stored in dbm for [ENSG00000214548.18]
WARNING, no entry stored in dbm for [ENSG00000219240.2]
WARNING, no entry stored in dbm for [ENSG00000280229.1]
WARNING, no entry stored in dbm for [ENSG00000253741.2]
WARNING, no entry stored in dbm for [ENSG00000214553.10]
WARNING, no entry stored in dbm for [ENSG00000228412.9]
WARNING, no entry stored in dbm for [ENSG00000259666.3]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000231566.2]
WARNING, no entry stored in dbm for [ENSG00000230587.2]
WARNING, no entry stored in dbm for [ENSG00000235142.10]
WARNING, no entry stored in dbm for [ENSG00000250127.1]
WARNING, no entry stored in dbm for [ENSG00000234634.2]
WARNING, no entry stored in dbm for [ENSG00000236008.3]
WARNING, no entry stored in dbm for [ENSG00000228262.10]
WARNING, no entry stored in dbm for [ENSG00000237092.2]
WARNING, no entry stored in dbm for [ENSG00000241769.7]
WARNING, no entry stored in dbm for [ENSG00000245060.8]
WARNING, no entry stored in dbm for [ENSG00000235621.9]
WARNING, no entry stored in dbm for [ENSG00000232931.6]
WARNING, no entry stored in dbm for [ENSG00000178977.3]
WARNING, no entry stored in dbm for [ENSG00000224924.7]
WARNING, no entry stored in dbm for [ENSG00000236790.6]
WARNING, no entry stored in dbm for [ENSG00000188185.13]
WARNING, no entry stored in dbm for [ENSG00000179406.8]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000258377.1]
WARNING, no entry stored in dbm for [ENSG00000230563.4]
WARNING, no entry stored in dbm for [ENSG00000177369.9]
WARNING, no entry stored in dbm for [ENSG00000259236.1]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000248725.3]
WARNING, no entry stored in dbm for [ENSG00000239569.3]
WARNING, no entry stored in dbm for [ENSG00000258792.4]
WARNING, no entry stored in dbm for [ENSG00000251034.2]
WARNING, no entry stored in dbm for [ENSG00000252549.1]
WARNING, no entry stored in dbm for [ENSG00000261173.1]
WARNING, no entry stored in dbm for [ENSG00000287076.1]
WARNING, no entry stored in dbm for [ENSG00000229926.1]
WARNING, no entry stored in dbm for [ENSG00000286675.1]
WARNING, no entry stored in dbm for [ENSG00000214182.5]
WARNING, no entry stored in dbm for [ENSG00000219102.3]
WARNING, no entry stored in dbm for [ENSG00000232875.1]
WARNING, no entry stored in dbm for [ENSG00000212694.8]
WARNING, no entry stored in dbm for [ENSG00000253774.1]
WARNING, no entry stored in dbm for [ENSG00000214922.9]
WARNING, no entry stored in dbm for [ENSG00000281344.1]
WARNING, no entry stored in dbm for [ENSG00000241170.3]
WARNING, no entry stored in dbm for [ENSG00000255980.1]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000251451.1]
WARNING, no entry stored in dbm for [ENSG00000230189.7]
WARNING, no entry stored in dbm for [ENSG00000233073.2]
WARNING, no entry stored in dbm for [ENSG00000231407.6]
WARNING, no entry stored in dbm for [ENSG00000213857.3]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000238105.7]
WARNING, no entry stored in dbm for [ENSG00000257489.6]
WARNING, no entry stored in dbm for [ENSG00000260701.2]
WARNING, no entry stored in dbm for [ENSG00000288052.1]
WARNING, no entry stored in dbm for [ENSG00000224837.1]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000254601.1]
WARNING, no entry stored in dbm for [ENSG00000285967.1]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000260167.1]
WARNING, no entry stored in dbm for [ENSG00000248736.3]
WARNING, no entry stored in dbm for [ENSG00000235768.1]
WARNING, no entry stored in dbm for [ENSG00000269420.5]
WARNING, no entry stored in dbm for [ENSG00000279516.2]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000255650.6]
WARNING, no entry stored in dbm for [ENSG00000272142.4]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000279176.1]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000278733.1]
WARNING, no entry stored in dbm for [ENSG00000230613.1]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000279390.1]
WARNING, no entry stored in dbm for [ENSG00000200169.1]
WARNING, no entry stored in dbm for [ENSG00000254490.1]
WARNING, no entry stored in dbm for [ENSG00000244306.11]
WARNING, no entry stored in dbm for [ENSG00000235316.1]
WARNING, no entry stored in dbm for [ENSG00000267868.1]
WARNING, no entry stored in dbm for [ENSG00000229236.3]
WARNING, no entry stored in dbm for [ENSG00000262001.1]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000213187.3]
WARNING, no entry stored in dbm for [ENSG00000228305.2]
WARNING, no entry stored in dbm for [ENSG00000251562.8]
WARNING, no entry stored in dbm for [ENSG00000231871.5]
WARNING, no entry stored in dbm for [ENSG00000253194.2]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000279480.1]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000286458.1]
WARNING, no entry stored in dbm for [ENSG00000235499.1]
WARNING, no entry stored in dbm for [ENSG00000278903.3]
WARNING, no entry stored in dbm for [ENSG00000242193.11]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000279381.1]
WARNING, no entry stored in dbm for [ENSG00000226435.10]
WARNING, no entry stored in dbm for [ENSG00000279208.1]
WARNING, no entry stored in dbm for [ENSG00000278931.1]
WARNING, no entry stored in dbm for [ENSG00000224568.2]
WARNING, no entry stored in dbm for [ENSG00000235038.1]
WARNING, no entry stored in dbm for [ENSG00000251339.6]
WARNING, no entry stored in dbm for [ENSG00000276786.1]
WARNING, no entry stored in dbm for [ENSG00000231304.2]
WARNING, no entry stored in dbm for [ENSG00000268388.6]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000237187.9]
WARNING, no entry stored in dbm for [ENSG00000205231.1]
WARNING, no entry stored in dbm for [ENSG00000262248.1]
WARNING, no entry stored in dbm for [ENSG00000214548.18]
WARNING, no entry stored in dbm for [ENSG00000261124.1]
WARNING, no entry stored in dbm for [ENSG00000267520.2]
WARNING, no entry stored in dbm for [ENSG00000279847.3]
WARNING, no entry stored in dbm for [ENSG00000178722.13]
WARNING, no entry stored in dbm for [ENSG00000280016.1]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000231424.3]
WARNING, no entry stored in dbm for [ENSG00000243439.3]
WARNING, no entry stored in dbm for [ENSG00000271699.5]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000270855.1]
WARNING, no entry stored in dbm for [ENSG00000285848.1]
WARNING, no entry stored in dbm for [ENSG00000260422.1]
WARNING, no entry stored in dbm for [ENSG00000237140.2]
WARNING, no entry stored in dbm for [ENSG00000227948.4]
WARNING, no entry stored in dbm for [ENSG00000225662.2]
WARNING, no entry stored in dbm for [ENSG00000254057.1]
WARNING, no entry stored in dbm for [ENSG00000247381.3]
WARNING, no entry stored in dbm for [ENSG00000243069.8]
WARNING, no entry stored in dbm for [ENSG00000233820.2]
WARNING, no entry stored in dbm for [ENSG00000226777.7]
WARNING, no entry stored in dbm for [ENSG00000280032.1]
WARNING, no entry stored in dbm for [ENSG00000286044.1]
WARNING, no entry stored in dbm for [ENSG00000264964.2]
WARNING, no entry stored in dbm for [ENSG00000235903.9]
WARNING, no entry stored in dbm for [ENSG00000261019.1]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000273192.1]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000231317.1]
WARNING, no entry stored in dbm for [ENSG00000236816.3]
WARNING, no entry stored in dbm for [ENSG00000250769.2]
WARNING, no entry stored in dbm for [ENSG00000283317.1]
WARNING, no entry stored in dbm for [ENSG00000271581.1]
WARNING, no entry stored in dbm for [ENSG00000283360.1]
WARNING, no entry stored in dbm for [ENSG00000234396.3]
WARNING, no entry stored in dbm for [ENSG00000218027.2]
WARNING, no entry stored in dbm for [ENSG00000237938.5]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000250090.1]
WARNING, no entry stored in dbm for [ENSG00000287569.1]
WARNING, no entry stored in dbm for [ENSG00000235582.2]
WARNING, no entry stored in dbm for [ENSG00000215016.2]
WARNING, no entry stored in dbm for [ENSG00000287516.1]
WARNING, no entry stored in dbm for [ENSG00000287564.1]
WARNING, no entry stored in dbm for [ENSG00000279096.2]
WARNING, no entry stored in dbm for [ENSG00000236680.1]
WARNING, no entry stored in dbm for [ENSG00000231616.9]
WARNING, no entry stored in dbm for [ENSG00000258656.1]
WARNING, no entry stored in dbm for [ENSG00000226987.1]
WARNING, no entry stored in dbm for [ENSG00000243517.1]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000233183.3]
WARNING, no entry stored in dbm for [ENSG00000279951.1]
WARNING, no entry stored in dbm for [ENSG00000258727.1]
WARNING, no entry stored in dbm for [ENSG00000231881.2]
WARNING, no entry stored in dbm for [ENSG00000228697.4]
WARNING, no entry stored in dbm for [ENSG00000213107.2]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000269604.1]
WARNING, no entry stored in dbm for [ENSG00000236255.2]
WARNING, no entry stored in dbm for [ENSG00000240197.1]
WARNING, no entry stored in dbm for [ENSG00000285018.1]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000287190.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000242435.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000275807.1]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000261448.1]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000271009.3]
WARNING, no entry stored in dbm for [ENSG00000197149.5]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000272763.1]
WARNING, no entry stored in dbm for [ENSG00000286152.1]
WARNING, no entry stored in dbm for [ENSG00000253284.2]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000266356.1]
WARNING, no entry stored in dbm for [ENSG00000213650.3]
WARNING, no entry stored in dbm for [ENSG00000285331.2]
WARNING, no entry stored in dbm for [ENSG00000255920.3]
WARNING, no entry stored in dbm for [ENSG00000253878.5]
WARNING, no entry stored in dbm for [ENSG00000262580.5]
WARNING, no entry stored in dbm for [ENSG00000259722.2]
WARNING, no entry stored in dbm for [ENSG00000255182.2]
WARNING, no entry stored in dbm for [ENSG00000250546.6]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000226232.8]
WARNING, no entry stored in dbm for [ENSG00000231892.1]
WARNING, no entry stored in dbm for [ENSG00000283537.2]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000287291.1]
WARNING, no entry stored in dbm for [ENSG00000286856.1]
WARNING, no entry stored in dbm for [ENSG00000279887.1]
WARNING, no entry stored in dbm for [ENSG00000287408.1]
WARNING, no entry stored in dbm for [ENSG00000259354.5]
WARNING, no entry stored in dbm for [ENSG00000285600.1]
WARNING, no entry stored in dbm for [ENSG00000263657.1]
WARNING, no entry stored in dbm for [ENSG00000266521.1]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000226380.9]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000253620.2]
WARNING, no entry stored in dbm for [ENSG00000261329.6]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000274895.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000235522.6]
WARNING, no entry stored in dbm for [ENSG00000225840.2]
WARNING, no entry stored in dbm for [ENSG00000277977.1]
WARNING, no entry stored in dbm for [ENSG00000226063.1]
WARNING, no entry stored in dbm for [ENSG00000270049.3]
WARNING, no entry stored in dbm for [ENSG00000260364.1]
WARNING, no entry stored in dbm for [ENSG00000260905.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000249526.1]
WARNING, no entry stored in dbm for [ENSG00000229855.9]
WARNING, no entry stored in dbm for [ENSG00000260249.3]
WARNING, no entry stored in dbm for [ENSG00000257221.4]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000280054.1]
WARNING, no entry stored in dbm for [ENSG00000267344.1]
WARNING, no entry stored in dbm for [ENSG00000257268.1]
WARNING, no entry stored in dbm for [ENSG00000267698.1]
WARNING, no entry stored in dbm for [ENSG00000288543.1]


	* STAR-Fusion complete.  See output: /tmp/nxf.509zlXEi2u/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)