File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/36016c18c0e61c4fa6ff9cf22ccccc/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:54:45
                             Started mapping on |	Jun 08 08:01:05
                                    Finished on |	Jun 08 08:09:56
       Mapping speed, Million of reads per hour |	343.13

                          Number of input reads |	50612085
                      Average input read length |	264
                                    UNIQUE READS:
                   Uniquely mapped reads number |	48837757
                        Uniquely mapped reads % |	96.49%
                          Average mapped length |	263.22
                       Number of splices: Total |	56980617
            Number of splices: Annotated (sjdb) |	56116517
                       Number of splices: GT/AG |	56246617
                       Number of splices: GC/AG |	432780
                       Number of splices: AT/AC |	48516
               Number of splices: Non-canonical |	252704
                      Mismatch rate per base, % |	0.18%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.11
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	1304770
             % of reads mapped to multiple loci |	2.58%
        Number of reads mapped to too many loci |	70819
             % of reads mapped to too many loci |	0.14%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	364735
                 % of reads unmapped: too short |	0.72%
                Number of reads unmapped: other |	34004
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%