Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/df5abd5631a69db1d85d67fd5b4f78/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/a5715087dac937adba901ed7923e30/659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/df5abd5631a69db1d85d67fd5b4f78/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cRB-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cRB-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:30:07.914 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:30:07 GMT 2026] MarkDuplicates --INPUT 659_cRB-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_cRB-T1-TRNA-1_B23WHTKLT4_1.md.bam --METRICS_FILE 659_cRB-T1-TRNA-1_B23WHTKLT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:30:07 GMT 2026] Executing as ?@nf-e1df5abd5631a69db1d85d67fd5b4f78-350ef-wtdwf on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:30:07 MarkDuplicates Start of doWork freeMemory: 105830096; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:30:07 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:30:07 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:30:12 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,342,736 INFO 2026-06-08 08:30:12 MarkDuplicates Tracking 1668 as yet unmatched pairs. 23 records in RAM. INFO 2026-06-08 08:30:15 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,590,945 INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 3093 as yet unmatched pairs. 35 records in RAM. INFO 2026-06-08 08:30:17 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:8,866,434 INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 4743 as yet unmatched pairs. 227 records in RAM. INFO 2026-06-08 08:30:20 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:11,989,228 INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 5968 as yet unmatched pairs. 75 records in RAM. INFO 2026-06-08 08:30:22 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:16,455,843 INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 7185 as yet unmatched pairs. 37 records in RAM. INFO 2026-06-08 08:30:25 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 3s. Last read position: chr1:19,282,602 INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 8335 as yet unmatched pairs. 36 records in RAM. INFO 2026-06-08 08:30:27 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:21,829,389 INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 9809 as yet unmatched pairs. 256 records in RAM. INFO 2026-06-08 08:30:29 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:21,879,108 INFO 2026-06-08 08:30:29 MarkDuplicates Tracking 11622 as yet unmatched pairs. 689 records in RAM. INFO 2026-06-08 08:30:33 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 3s. Last read position: chr1:23,692,744 INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 12512 as yet unmatched pairs. 181 records in RAM. INFO 2026-06-08 08:30:37 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 3s. Last read position: chr1:26,697,471 INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 13622 as yet unmatched pairs. 61 records in RAM. INFO 2026-06-08 08:30:40 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 3s. Last read position: chr1:29,112,351 INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 14835 as yet unmatched pairs. 70 records in RAM. INFO 2026-06-08 08:30:42 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:31,742,062 INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 16265 as yet unmatched pairs. 3 records in RAM. INFO 2026-06-08 08:30:44 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:34,855,846 INFO 2026-06-08 08:30:44 MarkDuplicates Tracking 17565 as yet unmatched pairs. 132 records in RAM. INFO 2026-06-08 08:30:48 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 3s. Last read position: chr1:39,026,388 INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 19075 as yet unmatched pairs. 154 records in RAM. INFO 2026-06-08 08:30:50 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:40,064,287 INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 20201 as yet unmatched pairs. 122 records in RAM. INFO 2026-06-08 08:30:53 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 3s. Last read position: chr1:43,591,046 INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 21613 as yet unmatched pairs. 158 records in RAM. INFO 2026-06-08 08:30:57 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 3s. Last read position: chr1:46,034,740 INFO 2026-06-08 08:30:57 MarkDuplicates Tracking 22947 as yet unmatched pairs. 129 records in RAM. INFO 2026-06-08 08:30:59 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:53,266,473 INFO 2026-06-08 08:30:59 MarkDuplicates Tracking 24155 as yet unmatched pairs. 15 records in RAM. INFO 2026-06-08 08:31:01 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:66,365,832 INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 25334 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:31:04 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 3s. Last read position: chr1:86,868,068 INFO 2026-06-08 08:31:04 MarkDuplicates Tracking 26724 as yet unmatched pairs. 227 records in RAM. INFO 2026-06-08 08:31:07 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:100,038,305 INFO 2026-06-08 08:31:07 MarkDuplicates Tracking 27823 as yet unmatched pairs. 74 records in RAM. INFO 2026-06-08 08:31:09 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 2s. Last read position: chr1:110,340,456 INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 29004 as yet unmatched pairs. 121 records in RAM. INFO 2026-06-08 08:31:11 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:114,718,074 INFO 2026-06-08 08:31:11 MarkDuplicates Tracking 30262 as yet unmatched pairs. 253 records in RAM. INFO 2026-06-08 08:31:13 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:119,919,469 INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 31885 as yet unmatched pairs. 713 records in RAM. INFO 2026-06-08 08:31:15 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:145,395,043 INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 32058 as yet unmatched pairs. 78 records in RAM. INFO 2026-06-08 08:31:17 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:148,586,270 INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 32841 as yet unmatched pairs. 91 records in RAM. INFO 2026-06-08 08:31:18 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:150,156,131 INFO 2026-06-08 08:31:18 MarkDuplicates Tracking 33708 as yet unmatched pairs. 147 records in RAM. INFO 2026-06-08 08:31:21 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:151,246,950 INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 34881 as yet unmatched pairs. 39 records in RAM. INFO 2026-06-08 08:31:23 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 2s. Last read position: chr1:153,816,463 INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 36012 as yet unmatched pairs. 12 records in RAM. INFO 2026-06-08 08:31:25 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 2s. Last read position: chr1:154,597,962 INFO 2026-06-08 08:31:25 MarkDuplicates Tracking 37630 as yet unmatched pairs. 367 records in RAM. INFO 2026-06-08 08:31:28 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:155,263,275 INFO 2026-06-08 08:31:28 MarkDuplicates Tracking 38563 as yet unmatched pairs. 76 records in RAM. INFO 2026-06-08 08:31:30 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,284 INFO 2026-06-08 08:31:30 MarkDuplicates Tracking 40496 as yet unmatched pairs. 583 records in RAM. INFO 2026-06-08 08:31:31 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:157,544,869 INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 41201 as yet unmatched pairs. 23 records in RAM. INFO 2026-06-08 08:31:34 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 2s. Last read position: chr1:161,198,170 INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 42455 as yet unmatched pairs. 33 records in RAM. INFO 2026-06-08 08:31:36 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:167,991,207 INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 43644 as yet unmatched pairs. 28 records in RAM. INFO 2026-06-08 08:31:39 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:173,961,123 INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 44888 as yet unmatched pairs. 30 records in RAM. INFO 2026-06-08 08:31:41 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:183,128,592 INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 46194 as yet unmatched pairs. 126 records in RAM. INFO 2026-06-08 08:31:44 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 2s. Last read position: chr1:193,082,211 INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 47408 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:31:46 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 2s. Last read position: chr1:201,998,277 INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 48508 as yet unmatched pairs. 11 records in RAM. INFO 2026-06-08 08:31:48 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr1:204,618,646 INFO 2026-06-08 08:31:48 MarkDuplicates Tracking 49765 as yet unmatched pairs. 40 records in RAM. INFO 2026-06-08 08:31:50 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:207,761,253 INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 51145 as yet unmatched pairs. 116 records in RAM. INFO 2026-06-08 08:31:52 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:220,153,347 INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 52419 as yet unmatched pairs. 69 records in RAM. INFO 2026-06-08 08:31:54 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:226,379,173 INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 53443 as yet unmatched pairs. 16 records in RAM. INFO 2026-06-08 08:31:56 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 1s. Last read position: chr1:233,177,828 INFO 2026-06-08 08:31:56 MarkDuplicates Tracking 55172 as yet unmatched pairs. 217 records in RAM. INFO 2026-06-08 08:31:58 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:244,424,029 INFO 2026-06-08 08:31:58 MarkDuplicates Tracking 56416 as yet unmatched pairs. 62 records in RAM. INFO 2026-06-08 08:32:00 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr2:8,731,078 INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 57688 as yet unmatched pairs. 57470 records in RAM. INFO 2026-06-08 08:32:02 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr2:20,447,805 INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 58967 as yet unmatched pairs. 58748 records in RAM. INFO 2026-06-08 08:32:04 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:27,085,681 INFO 2026-06-08 08:32:04 MarkDuplicates Tracking 60535 as yet unmatched pairs. 60300 records in RAM. INFO 2026-06-08 08:32:06 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr2:32,468,080 INFO 2026-06-08 08:32:06 MarkDuplicates Tracking 61552 as yet unmatched pairs. 61317 records in RAM. INFO 2026-06-08 08:32:10 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:32:10 MarkDuplicates Tracking 410284 as yet unmatched pairs. 54238 records in RAM. INFO 2026-06-08 08:32:12 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,416 INFO 2026-06-08 08:32:12 MarkDuplicates Tracking 589038 as yet unmatched pairs. 50683 records in RAM. INFO 2026-06-08 08:32:14 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:42,325,467 INFO 2026-06-08 08:32:14 MarkDuplicates Tracking 602248 as yet unmatched pairs. 49471 records in RAM. INFO 2026-06-08 08:32:16 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr2:47,377,014 INFO 2026-06-08 08:32:16 MarkDuplicates Tracking 601451 as yet unmatched pairs. 48647 records in RAM. INFO 2026-06-08 08:32:18 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 2s. Last read position: chr2:54,668,436 INFO 2026-06-08 08:32:18 MarkDuplicates Tracking 599367 as yet unmatched pairs. 46562 records in RAM. INFO 2026-06-08 08:32:20 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:61,876,929 INFO 2026-06-08 08:32:20 MarkDuplicates Tracking 597919 as yet unmatched pairs. 45114 records in RAM. INFO 2026-06-08 08:32:23 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:69,542,636 INFO 2026-06-08 08:32:23 MarkDuplicates Tracking 596587 as yet unmatched pairs. 43781 records in RAM. INFO 2026-06-08 08:32:25 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 2s. Last read position: chr2:74,142,293 INFO 2026-06-08 08:32:25 MarkDuplicates Tracking 595278 as yet unmatched pairs. 42466 records in RAM. INFO 2026-06-08 08:32:28 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:85,541,692 INFO 2026-06-08 08:32:28 MarkDuplicates Tracking 593949 as yet unmatched pairs. 41135 records in RAM. INFO 2026-06-08 08:32:31 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 3s. Last read position: chr2:96,254,057 INFO 2026-06-08 08:32:31 MarkDuplicates Tracking 592898 as yet unmatched pairs. 40081 records in RAM. INFO 2026-06-08 08:32:33 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:101,005,963 INFO 2026-06-08 08:32:33 MarkDuplicates Tracking 593429 as yet unmatched pairs. 40612 records in RAM. INFO 2026-06-08 08:32:35 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:108,763,864 INFO 2026-06-08 08:32:35 MarkDuplicates Tracking 590349 as yet unmatched pairs. 37530 records in RAM. INFO 2026-06-08 08:32:37 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:111,872,693 INFO 2026-06-08 08:32:37 MarkDuplicates Tracking 589335 as yet unmatched pairs. 36515 records in RAM. INFO 2026-06-08 08:32:39 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:121,377,629 INFO 2026-06-08 08:32:39 MarkDuplicates Tracking 588085 as yet unmatched pairs. 35262 records in RAM. INFO 2026-06-08 08:32:41 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:134,954,336 INFO 2026-06-08 08:32:41 MarkDuplicates Tracking 586754 as yet unmatched pairs. 33929 records in RAM. INFO 2026-06-08 08:32:43 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:158,669,855 INFO 2026-06-08 08:32:43 MarkDuplicates Tracking 585650 as yet unmatched pairs. 32795 records in RAM. INFO 2026-06-08 08:32:45 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:171,553,373 INFO 2026-06-08 08:32:45 MarkDuplicates Tracking 584814 as yet unmatched pairs. 31959 records in RAM. INFO 2026-06-08 08:32:47 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 2s. Last read position: chr2:178,539,434 INFO 2026-06-08 08:32:47 MarkDuplicates Tracking 583223 as yet unmatched pairs. 30367 records in RAM. INFO 2026-06-08 08:32:49 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:187,838,385 INFO 2026-06-08 08:32:49 MarkDuplicates Tracking 581812 as yet unmatched pairs. 28955 records in RAM. INFO 2026-06-08 08:32:52 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 2s. Last read position: chr2:188,992,916 INFO 2026-06-08 08:32:52 MarkDuplicates Tracking 586694 as yet unmatched pairs. 33837 records in RAM. INFO 2026-06-08 08:32:54 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr2:188,997,208 INFO 2026-06-08 08:32:54 MarkDuplicates Tracking 581968 as yet unmatched pairs. 29111 records in RAM. INFO 2026-06-08 08:32:56 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr2:189,003,009 INFO 2026-06-08 08:32:56 MarkDuplicates Tracking 582213 as yet unmatched pairs. 29356 records in RAM. INFO 2026-06-08 08:32:59 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:189,008,943 INFO 2026-06-08 08:32:59 MarkDuplicates Tracking 578085 as yet unmatched pairs. 25228 records in RAM. INFO 2026-06-08 08:33:01 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr2:189,057,349 INFO 2026-06-08 08:33:01 MarkDuplicates Tracking 575273 as yet unmatched pairs. 22408 records in RAM. INFO 2026-06-08 08:33:03 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:196,789,905 INFO 2026-06-08 08:33:03 MarkDuplicates Tracking 573142 as yet unmatched pairs. 20277 records in RAM. INFO 2026-06-08 08:33:05 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:202,035,250 INFO 2026-06-08 08:33:05 MarkDuplicates Tracking 571934 as yet unmatched pairs. 19050 records in RAM. INFO 2026-06-08 08:33:07 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:210,016,549 INFO 2026-06-08 08:33:07 MarkDuplicates Tracking 570944 as yet unmatched pairs. 18059 records in RAM. INFO 2026-06-08 08:33:09 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:215,370,390 INFO 2026-06-08 08:33:09 MarkDuplicates Tracking 576062 as yet unmatched pairs. 23177 records in RAM. INFO 2026-06-08 08:33:12 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,630 INFO 2026-06-08 08:33:12 MarkDuplicates Tracking 573110 as yet unmatched pairs. 20225 records in RAM. INFO 2026-06-08 08:33:14 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr2:215,383,444 INFO 2026-06-08 08:33:14 MarkDuplicates Tracking 569978 as yet unmatched pairs. 17093 records in RAM. INFO 2026-06-08 08:33:17 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:215,397,695 INFO 2026-06-08 08:33:17 MarkDuplicates Tracking 567790 as yet unmatched pairs. 14905 records in RAM. INFO 2026-06-08 08:33:19 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 2s. Last read position: chr2:215,408,333 INFO 2026-06-08 08:33:19 MarkDuplicates Tracking 570019 as yet unmatched pairs. 17134 records in RAM. INFO 2026-06-08 08:33:21 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:215,424,189 INFO 2026-06-08 08:33:21 MarkDuplicates Tracking 566847 as yet unmatched pairs. 13962 records in RAM. INFO 2026-06-08 08:33:23 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:216,113,042 INFO 2026-06-08 08:33:23 MarkDuplicates Tracking 562938 as yet unmatched pairs. 10052 records in RAM. INFO 2026-06-08 08:33:25 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:218,265,058 INFO 2026-06-08 08:33:25 MarkDuplicates Tracking 561371 as yet unmatched pairs. 8482 records in RAM. INFO 2026-06-08 08:33:27 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:219,505,228 INFO 2026-06-08 08:33:27 MarkDuplicates Tracking 559987 as yet unmatched pairs. 7098 records in RAM. INFO 2026-06-08 08:33:29 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:230,725,141 INFO 2026-06-08 08:33:29 MarkDuplicates Tracking 558611 as yet unmatched pairs. 5705 records in RAM. INFO 2026-06-08 08:33:31 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:236,120,382 INFO 2026-06-08 08:33:31 MarkDuplicates Tracking 557314 as yet unmatched pairs. 4404 records in RAM. INFO 2026-06-08 08:33:33 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:237,366,711 INFO 2026-06-08 08:33:33 MarkDuplicates Tracking 556742 as yet unmatched pairs. 3832 records in RAM. INFO 2026-06-08 08:33:35 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr2:237,525,657 INFO 2026-06-08 08:33:35 MarkDuplicates Tracking 554857 as yet unmatched pairs. 1946 records in RAM. INFO 2026-06-08 08:33:38 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:241,266,799 INFO 2026-06-08 08:33:38 MarkDuplicates Tracking 553471 as yet unmatched pairs. 558 records in RAM. INFO 2026-06-08 08:33:41 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 3s. Last read position: chr3:10,078,042 INFO 2026-06-08 08:33:41 MarkDuplicates Tracking 552080 as yet unmatched pairs. 28868 records in RAM. INFO 2026-06-08 08:33:44 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr3:15,039,186 INFO 2026-06-08 08:33:44 MarkDuplicates Tracking 550772 as yet unmatched pairs. 27557 records in RAM. INFO 2026-06-08 08:33:46 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr3:33,408,690 INFO 2026-06-08 08:33:46 MarkDuplicates Tracking 549518 as yet unmatched pairs. 26302 records in RAM. INFO 2026-06-08 08:33:48 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr3:40,458,679 INFO 2026-06-08 08:33:48 MarkDuplicates Tracking 549013 as yet unmatched pairs. 25781 records in RAM. INFO 2026-06-08 08:33:50 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 2s. Last read position: chr3:45,921,829 INFO 2026-06-08 08:33:50 MarkDuplicates Tracking 546858 as yet unmatched pairs. 23624 records in RAM. INFO 2026-06-08 08:33:53 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr3:47,915,966 INFO 2026-06-08 08:33:53 MarkDuplicates Tracking 545955 as yet unmatched pairs. 22720 records in RAM. INFO 2026-06-08 08:33:55 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr3:49,012,558 INFO 2026-06-08 08:33:55 MarkDuplicates Tracking 544305 as yet unmatched pairs. 21052 records in RAM. INFO 2026-06-08 08:33:58 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr3:49,677,008 INFO 2026-06-08 08:33:58 MarkDuplicates Tracking 542972 as yet unmatched pairs. 19717 records in RAM. INFO 2026-06-08 08:34:00 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:51,993,729 INFO 2026-06-08 08:34:00 MarkDuplicates Tracking 541756 as yet unmatched pairs. 18500 records in RAM. INFO 2026-06-08 08:34:03 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 2s. Last read position: chr3:52,844,820 INFO 2026-06-08 08:34:03 MarkDuplicates Tracking 540282 as yet unmatched pairs. 17026 records in RAM. INFO 2026-06-08 08:34:05 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr3:58,153,409 INFO 2026-06-08 08:34:05 MarkDuplicates Tracking 539436 as yet unmatched pairs. 16180 records in RAM. INFO 2026-06-08 08:34:07 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr3:78,617,858 INFO 2026-06-08 08:34:07 MarkDuplicates Tracking 537848 as yet unmatched pairs. 14587 records in RAM. INFO 2026-06-08 08:34:09 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 2s. Last read position: chr3:101,853,112 INFO 2026-06-08 08:34:09 MarkDuplicates Tracking 536815 as yet unmatched pairs. 13547 records in RAM. INFO 2026-06-08 08:34:11 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:119,714,216 INFO 2026-06-08 08:34:11 MarkDuplicates Tracking 535382 as yet unmatched pairs. 12114 records in RAM. INFO 2026-06-08 08:34:14 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:04s. Time for last 1,000,000: 2s. Last read position: chr3:124,633,851 INFO 2026-06-08 08:34:14 MarkDuplicates Tracking 534263 as yet unmatched pairs. 10994 records in RAM. INFO 2026-06-08 08:34:16 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr3:128,637,859 INFO 2026-06-08 08:34:16 MarkDuplicates Tracking 533163 as yet unmatched pairs. 9893 records in RAM. INFO 2026-06-08 08:34:19 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 3s. Last read position: chr3:133,588,356 INFO 2026-06-08 08:34:19 MarkDuplicates Tracking 531745 as yet unmatched pairs. 8473 records in RAM. INFO 2026-06-08 08:34:22 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 3s. Last read position: chr3:146,517,084 INFO 2026-06-08 08:34:22 MarkDuplicates Tracking 530887 as yet unmatched pairs. 7594 records in RAM. INFO 2026-06-08 08:34:25 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 3s. Last read position: chr3:160,381,645 INFO 2026-06-08 08:34:25 MarkDuplicates Tracking 529137 as yet unmatched pairs. 5823 records in RAM. INFO 2026-06-08 08:34:28 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 3s. Last read position: chr3:179,576,897 INFO 2026-06-08 08:34:28 MarkDuplicates Tracking 528125 as yet unmatched pairs. 4795 records in RAM. INFO 2026-06-08 08:34:31 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 3s. Last read position: chr3:184,331,302 INFO 2026-06-08 08:34:31 MarkDuplicates Tracking 526865 as yet unmatched pairs. 3530 records in RAM. INFO 2026-06-08 08:34:35 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 3s. Last read position: chr3:193,156,538 INFO 2026-06-08 08:34:35 MarkDuplicates Tracking 525320 as yet unmatched pairs. 1985 records in RAM. INFO 2026-06-08 08:34:38 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:195,782,650 INFO 2026-06-08 08:34:38 MarkDuplicates Tracking 525806 as yet unmatched pairs. 2470 records in RAM. INFO 2026-06-08 08:34:41 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr3:197,003,975 INFO 2026-06-08 08:34:41 MarkDuplicates Tracking 523766 as yet unmatched pairs. 429 records in RAM. INFO 2026-06-08 08:34:43 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr4:1,744,556 INFO 2026-06-08 08:34:43 MarkDuplicates Tracking 522176 as yet unmatched pairs. 14140 records in RAM. INFO 2026-06-08 08:34:45 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:7,768,899 INFO 2026-06-08 08:34:45 MarkDuplicates Tracking 521075 as yet unmatched pairs. 13024 records in RAM. INFO 2026-06-08 08:34:47 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr4:24,808,606 INFO 2026-06-08 08:34:47 MarkDuplicates Tracking 519570 as yet unmatched pairs. 11518 records in RAM. INFO 2026-06-08 08:34:49 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr4:48,341,557 INFO 2026-06-08 08:34:49 MarkDuplicates Tracking 518335 as yet unmatched pairs. 10280 records in RAM. INFO 2026-06-08 08:34:51 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 2s. Last read position: chr4:57,040,847 INFO 2026-06-08 08:34:51 MarkDuplicates Tracking 517860 as yet unmatched pairs. 9788 records in RAM. INFO 2026-06-08 08:34:53 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr4:76,779,084 INFO 2026-06-08 08:34:53 MarkDuplicates Tracking 515909 as yet unmatched pairs. 7837 records in RAM. INFO 2026-06-08 08:34:55 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr4:87,473,747 INFO 2026-06-08 08:34:55 MarkDuplicates Tracking 515173 as yet unmatched pairs. 7088 records in RAM. INFO 2026-06-08 08:34:57 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr4:106,922,580 INFO 2026-06-08 08:34:57 MarkDuplicates Tracking 513518 as yet unmatched pairs. 5414 records in RAM. INFO 2026-06-08 08:34:59 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr4:122,243,872 INFO 2026-06-08 08:34:59 MarkDuplicates Tracking 512388 as yet unmatched pairs. 4283 records in RAM. INFO 2026-06-08 08:35:02 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr4:147,732,327 INFO 2026-06-08 08:35:02 MarkDuplicates Tracking 511137 as yet unmatched pairs. 3029 records in RAM. INFO 2026-06-08 08:35:05 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 3s. Last read position: chr4:155,937,473 INFO 2026-06-08 08:35:05 MarkDuplicates Tracking 510088 as yet unmatched pairs. 1979 records in RAM. INFO 2026-06-08 08:35:09 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 3s. Last read position: chr4:184,672,371 INFO 2026-06-08 08:35:09 MarkDuplicates Tracking 508727 as yet unmatched pairs. 616 records in RAM. INFO 2026-06-08 08:35:13 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 4s. Last read position: chr5:4,196,213 INFO 2026-06-08 08:35:13 MarkDuplicates Tracking 507354 as yet unmatched pairs. 26637 records in RAM. INFO 2026-06-08 08:35:16 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 3s. Last read position: chr5:14,461,090 INFO 2026-06-08 08:35:16 MarkDuplicates Tracking 506184 as yet unmatched pairs. 25459 records in RAM. INFO 2026-06-08 08:35:19 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 3s. Last read position: chr5:34,823,729 INFO 2026-06-08 08:35:19 MarkDuplicates Tracking 504832 as yet unmatched pairs. 24091 records in RAM. INFO 2026-06-08 08:35:23 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 3s. Last read position: chr5:52,800,695 INFO 2026-06-08 08:35:23 MarkDuplicates Tracking 503721 as yet unmatched pairs. 22980 records in RAM. INFO 2026-06-08 08:35:26 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 3s. Last read position: chr5:69,121,792 INFO 2026-06-08 08:35:26 MarkDuplicates Tracking 502399 as yet unmatched pairs. 21649 records in RAM. INFO 2026-06-08 08:35:29 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 3s. Last read position: chr5:75,596,633 INFO 2026-06-08 08:35:29 MarkDuplicates Tracking 501245 as yet unmatched pairs. 20491 records in RAM. INFO 2026-06-08 08:35:32 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 3s. Last read position: chr5:83,537,407 INFO 2026-06-08 08:35:32 MarkDuplicates Tracking 500265 as yet unmatched pairs. 19510 records in RAM. INFO 2026-06-08 08:35:35 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 3s. Last read position: chr5:96,747,381 INFO 2026-06-08 08:35:35 MarkDuplicates Tracking 498968 as yet unmatched pairs. 18213 records in RAM. INFO 2026-06-08 08:35:39 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 3s. Last read position: chr5:122,070,520 INFO 2026-06-08 08:35:39 MarkDuplicates Tracking 497775 as yet unmatched pairs. 17003 records in RAM. INFO 2026-06-08 08:35:42 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 3s. Last read position: chr5:134,115,969 INFO 2026-06-08 08:35:42 MarkDuplicates Tracking 496264 as yet unmatched pairs. 15483 records in RAM. INFO 2026-06-08 08:35:45 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr5:138,467,414 INFO 2026-06-08 08:35:45 MarkDuplicates Tracking 495227 as yet unmatched pairs. 14446 records in RAM. INFO 2026-06-08 08:35:47 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr5:140,697,248 INFO 2026-06-08 08:35:47 MarkDuplicates Tracking 493914 as yet unmatched pairs. 13115 records in RAM. INFO 2026-06-08 08:35:49 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr5:145,764,907 INFO 2026-06-08 08:35:49 MarkDuplicates Tracking 492825 as yet unmatched pairs. 12024 records in RAM. INFO 2026-06-08 08:35:51 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr5:150,126,600 INFO 2026-06-08 08:35:51 MarkDuplicates Tracking 492028 as yet unmatched pairs. 11227 records in RAM. INFO 2026-06-08 08:35:53 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr5:150,404,685 INFO 2026-06-08 08:35:53 MarkDuplicates Tracking 495335 as yet unmatched pairs. 14533 records in RAM. INFO 2026-06-08 08:35:55 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr5:150,648,716 INFO 2026-06-08 08:35:55 MarkDuplicates Tracking 489300 as yet unmatched pairs. 8498 records in RAM. INFO 2026-06-08 08:35:58 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:151,673,162 INFO 2026-06-08 08:35:58 MarkDuplicates Tracking 489917 as yet unmatched pairs. 9108 records in RAM. INFO 2026-06-08 08:36:00 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:168,616,431 INFO 2026-06-08 08:36:00 MarkDuplicates Tracking 486542 as yet unmatched pairs. 5732 records in RAM. INFO 2026-06-08 08:36:03 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:172,770,650 INFO 2026-06-08 08:36:03 MarkDuplicates Tracking 485363 as yet unmatched pairs. 4552 records in RAM. INFO 2026-06-08 08:36:05 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 2s. Last read position: chr5:177,489,517 INFO 2026-06-08 08:36:05 MarkDuplicates Tracking 484407 as yet unmatched pairs. 3594 records in RAM. INFO 2026-06-08 08:36:07 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 2s. Last read position: chr5:179,798,985 INFO 2026-06-08 08:36:07 MarkDuplicates Tracking 482612 as yet unmatched pairs. 1798 records in RAM. INFO 2026-06-08 08:36:10 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 3s. Last read position: chr5:181,223,978 INFO 2026-06-08 08:36:10 MarkDuplicates Tracking 481244 as yet unmatched pairs. 419 records in RAM. INFO 2026-06-08 08:36:13 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 2s. Last read position: chr6:7,289,793 INFO 2026-06-08 08:36:13 MarkDuplicates Tracking 480075 as yet unmatched pairs. 27742 records in RAM. INFO 2026-06-08 08:36:15 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:24,278,051 INFO 2026-06-08 08:36:15 MarkDuplicates Tracking 478655 as yet unmatched pairs. 26317 records in RAM. INFO 2026-06-08 08:36:17 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr6:27,872,072 INFO 2026-06-08 08:36:17 MarkDuplicates Tracking 477417 as yet unmatched pairs. 25078 records in RAM. INFO 2026-06-08 08:36:19 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr6:30,677,101 INFO 2026-06-08 08:36:19 MarkDuplicates Tracking 476391 as yet unmatched pairs. 24052 records in RAM. INFO 2026-06-08 08:36:21 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr6:31,548,327 INFO 2026-06-08 08:36:21 MarkDuplicates Tracking 475066 as yet unmatched pairs. 22727 records in RAM. INFO 2026-06-08 08:36:23 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,166 INFO 2026-06-08 08:36:23 MarkDuplicates Tracking 474117 as yet unmatched pairs. 21771 records in RAM. INFO 2026-06-08 08:36:25 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr6:32,061,474 INFO 2026-06-08 08:36:25 MarkDuplicates Tracking 473018 as yet unmatched pairs. 20672 records in RAM. INFO 2026-06-08 08:36:27 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr6:32,979,914 INFO 2026-06-08 08:36:27 MarkDuplicates Tracking 471945 as yet unmatched pairs. 19599 records in RAM. INFO 2026-06-08 08:36:29 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr6:33,669,087 INFO 2026-06-08 08:36:29 MarkDuplicates Tracking 470713 as yet unmatched pairs. 18354 records in RAM. INFO 2026-06-08 08:36:31 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr6:37,475,319 INFO 2026-06-08 08:36:31 MarkDuplicates Tracking 469182 as yet unmatched pairs. 16819 records in RAM. INFO 2026-06-08 08:36:34 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr6:43,339,932 INFO 2026-06-08 08:36:34 MarkDuplicates Tracking 467806 as yet unmatched pairs. 15442 records in RAM. INFO 2026-06-08 08:36:37 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 3s. Last read position: chr6:53,005,167 INFO 2026-06-08 08:36:37 MarkDuplicates Tracking 466527 as yet unmatched pairs. 14163 records in RAM. INFO 2026-06-08 08:36:39 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr6:73,730,387 INFO 2026-06-08 08:36:39 MarkDuplicates Tracking 465451 as yet unmatched pairs. 13086 records in RAM. INFO 2026-06-08 08:36:41 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr6:75,259,380 INFO 2026-06-08 08:36:41 MarkDuplicates Tracking 464060 as yet unmatched pairs. 11695 records in RAM. INFO 2026-06-08 08:36:43 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr6:89,728,977 INFO 2026-06-08 08:36:43 MarkDuplicates Tracking 462598 as yet unmatched pairs. 10231 records in RAM. INFO 2026-06-08 08:36:46 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr6:110,959,205 INFO 2026-06-08 08:36:46 MarkDuplicates Tracking 461233 as yet unmatched pairs. 8847 records in RAM. INFO 2026-06-08 08:36:48 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr6:122,432,105 INFO 2026-06-08 08:36:48 MarkDuplicates Tracking 459857 as yet unmatched pairs. 7468 records in RAM. INFO 2026-06-08 08:36:50 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr6:135,197,125 INFO 2026-06-08 08:36:50 MarkDuplicates Tracking 458619 as yet unmatched pairs. 6213 records in RAM. INFO 2026-06-08 08:36:52 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:144,748,274 INFO 2026-06-08 08:36:52 MarkDuplicates Tracking 457487 as yet unmatched pairs. 5081 records in RAM. INFO 2026-06-08 08:36:54 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr6:152,302,031 INFO 2026-06-08 08:36:54 MarkDuplicates Tracking 456164 as yet unmatched pairs. 3752 records in RAM. INFO 2026-06-08 08:36:56 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:158,785,410 INFO 2026-06-08 08:36:56 MarkDuplicates Tracking 456065 as yet unmatched pairs. 3647 records in RAM. INFO 2026-06-08 08:36:58 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr6:163,478,800 INFO 2026-06-08 08:36:58 MarkDuplicates Tracking 453791 as yet unmatched pairs. 1360 records in RAM. INFO 2026-06-08 08:37:01 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 3s. Last read position: chr6:170,395,486 INFO 2026-06-08 08:37:01 MarkDuplicates Tracking 452550 as yet unmatched pairs. 118 records in RAM. INFO 2026-06-08 08:37:05 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 3s. Last read position: chr7:2,647,917 INFO 2026-06-08 08:37:05 MarkDuplicates Tracking 451365 as yet unmatched pairs. 35974 records in RAM. INFO 2026-06-08 08:37:07 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr7:5,390,513 INFO 2026-06-08 08:37:07 MarkDuplicates Tracking 449736 as yet unmatched pairs. 34340 records in RAM. INFO 2026-06-08 08:37:09 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,535 INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 452203 as yet unmatched pairs. 36806 records in RAM. INFO 2026-06-08 08:37:11 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr7:6,402,319 INFO 2026-06-08 08:37:11 MarkDuplicates Tracking 447156 as yet unmatched pairs. 31757 records in RAM. INFO 2026-06-08 08:37:13 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr7:23,270,161 INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 445823 as yet unmatched pairs. 30424 records in RAM. INFO 2026-06-08 08:37:15 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr7:34,989,923 INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 444277 as yet unmatched pairs. 28871 records in RAM. INFO 2026-06-08 08:37:17 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:44,106,861 INFO 2026-06-08 08:37:17 MarkDuplicates Tracking 443544 as yet unmatched pairs. 28131 records in RAM. INFO 2026-06-08 08:37:19 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr7:44,799,804 INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 443117 as yet unmatched pairs. 27704 records in RAM. INFO 2026-06-08 08:37:21 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr7:56,081,102 INFO 2026-06-08 08:37:21 MarkDuplicates Tracking 440568 as yet unmatched pairs. 25147 records in RAM. INFO 2026-06-08 08:37:23 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr7:73,307,396 INFO 2026-06-08 08:37:23 MarkDuplicates Tracking 439689 as yet unmatched pairs. 24267 records in RAM. INFO 2026-06-08 08:37:24 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:75,196,759 INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 438532 as yet unmatched pairs. 23110 records in RAM. INFO 2026-06-08 08:37:26 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr7:76,511,640 INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 437310 as yet unmatched pairs. 21888 records in RAM. INFO 2026-06-08 08:37:28 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr7:92,123,756 INFO 2026-06-08 08:37:28 MarkDuplicates Tracking 436309 as yet unmatched pairs. 20887 records in RAM. INFO 2026-06-08 08:37:31 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr7:94,405,233 INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 437773 as yet unmatched pairs. 22350 records in RAM. INFO 2026-06-08 08:37:33 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 2s. Last read position: chr7:94,410,926 INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 438167 as yet unmatched pairs. 22743 records in RAM. INFO 2026-06-08 08:37:36 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 2s. Last read position: chr7:94,420,254 INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 435855 as yet unmatched pairs. 20431 records in RAM. INFO 2026-06-08 08:37:38 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr7:94,426,455 INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 434125 as yet unmatched pairs. 18701 records in RAM. INFO 2026-06-08 08:37:40 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 2s. Last read position: chr7:98,386,015 INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 429604 as yet unmatched pairs. 14163 records in RAM. INFO 2026-06-08 08:37:42 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr7:100,352,393 INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 428595 as yet unmatched pairs. 13149 records in RAM. INFO 2026-06-08 08:37:44 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,139 INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 426898 as yet unmatched pairs. 11451 records in RAM. INFO 2026-06-08 08:37:46 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr7:101,032,429 INFO 2026-06-08 08:37:46 MarkDuplicates Tracking 426450 as yet unmatched pairs. 11003 records in RAM. INFO 2026-06-08 08:37:48 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 1s. Last read position: chr7:102,425,078 INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 425210 as yet unmatched pairs. 9763 records in RAM. INFO 2026-06-08 08:37:49 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr7:105,143,231 INFO 2026-06-08 08:37:49 MarkDuplicates Tracking 424496 as yet unmatched pairs. 9046 records in RAM. INFO 2026-06-08 08:37:51 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 2s. Last read position: chr7:116,758,494 INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 423632 as yet unmatched pairs. 8172 records in RAM. INFO 2026-06-08 08:37:53 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:128,570,180 INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 422439 as yet unmatched pairs. 6974 records in RAM. INFO 2026-06-08 08:37:56 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr7:134,960,557 INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 422387 as yet unmatched pairs. 6921 records in RAM. INFO 2026-06-08 08:37:58 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:140,808,040 INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 419907 as yet unmatched pairs. 4438 records in RAM. INFO 2026-06-08 08:38:00 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr7:144,365,635 INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 418649 as yet unmatched pairs. 3180 records in RAM. INFO 2026-06-08 08:38:02 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 2s. Last read position: chr7:151,066,666 INFO 2026-06-08 08:38:02 MarkDuplicates Tracking 417242 as yet unmatched pairs. 1771 records in RAM. INFO 2026-06-08 08:38:05 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 3s. Last read position: chr7:157,248,413 INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 415912 as yet unmatched pairs. 437 records in RAM. INFO 2026-06-08 08:38:09 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 3s. Last read position: chr8:11,850,934 INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 414916 as yet unmatched pairs. 22750 records in RAM. INFO 2026-06-08 08:38:12 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 3s. Last read position: chr8:22,593,738 INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 413669 as yet unmatched pairs. 21502 records in RAM. INFO 2026-06-08 08:38:15 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr8:29,070,728 INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 411841 as yet unmatched pairs. 19674 records in RAM. INFO 2026-06-08 08:38:17 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr8:38,210,379 INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 410408 as yet unmatched pairs. 18240 records in RAM. INFO 2026-06-08 08:38:19 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr8:42,175,952 INFO 2026-06-08 08:38:19 MarkDuplicates Tracking 409115 as yet unmatched pairs. 16946 records in RAM. INFO 2026-06-08 08:38:22 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 3s. Last read position: chr8:56,993,301 INFO 2026-06-08 08:38:22 MarkDuplicates Tracking 407771 as yet unmatched pairs. 15600 records in RAM. INFO 2026-06-08 08:38:25 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 3s. Last read position: chr8:70,587,106 INFO 2026-06-08 08:38:25 MarkDuplicates Tracking 406889 as yet unmatched pairs. 14714 records in RAM. INFO 2026-06-08 08:38:28 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 3s. Last read position: chr8:96,287,046 INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 405408 as yet unmatched pairs. 13232 records in RAM. INFO 2026-06-08 08:38:32 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 3s. Last read position: chr8:100,924,029 INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 404664 as yet unmatched pairs. 12486 records in RAM. INFO 2026-06-08 08:38:35 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 3s. Last read position: chr8:120,147,864 INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 403110 as yet unmatched pairs. 10931 records in RAM. INFO 2026-06-08 08:38:37 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr8:133,225,506 INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 401719 as yet unmatched pairs. 9540 records in RAM. INFO 2026-06-08 08:38:39 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 2s. Last read position: chr8:143,616,180 INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 400414 as yet unmatched pairs. 8234 records in RAM. INFO 2026-06-08 08:38:41 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,888 INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 399490 as yet unmatched pairs. 7310 records in RAM. INFO 2026-06-08 08:38:42 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,389 INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 399144 as yet unmatched pairs. 6964 records in RAM. INFO 2026-06-08 08:38:44 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,197 INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 398685 as yet unmatched pairs. 6505 records in RAM. INFO 2026-06-08 08:38:46 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr8:143,917,220 INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 398255 as yet unmatched pairs. 6074 records in RAM. INFO 2026-06-08 08:38:49 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr8:143,923,878 INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 395969 as yet unmatched pairs. 3788 records in RAM. INFO 2026-06-08 08:38:52 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 3s. Last read position: chr8:144,080,542 INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 394114 as yet unmatched pairs. 1933 records in RAM. INFO 2026-06-08 08:38:55 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr8:144,790,369 INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 392659 as yet unmatched pairs. 478 records in RAM. INFO 2026-06-08 08:38:58 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 3s. Last read position: chr9:14,807,960 INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 391536 as yet unmatched pairs. 25793 records in RAM. INFO 2026-06-08 08:39:01 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr9:33,468,055 INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 389920 as yet unmatched pairs. 24172 records in RAM. INFO 2026-06-08 08:39:04 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr9:35,703,808 INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 388481 as yet unmatched pairs. 22733 records in RAM. INFO 2026-06-08 08:39:07 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr9:65,145,853 INFO 2026-06-08 08:39:07 MarkDuplicates Tracking 387146 as yet unmatched pairs. 21372 records in RAM. INFO 2026-06-08 08:39:10 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr9:83,623,157 INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 386011 as yet unmatched pairs. 20236 records in RAM. INFO 2026-06-08 08:39:13 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 2s. Last read position: chr9:92,514,739 INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 384705 as yet unmatched pairs. 18916 records in RAM. INFO 2026-06-08 08:39:15 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr9:98,087,507 INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 383522 as yet unmatched pairs. 17731 records in RAM. INFO 2026-06-08 08:39:19 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 3s. Last read position: chr9:107,300,164 INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 382500 as yet unmatched pairs. 16709 records in RAM. INFO 2026-06-08 08:39:22 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 3s. Last read position: chr9:113,514,463 INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 381059 as yet unmatched pairs. 15266 records in RAM. INFO 2026-06-08 08:39:24 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr9:120,439,637 INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 379733 as yet unmatched pairs. 13940 records in RAM. INFO 2026-06-08 08:39:26 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr9:124,858,010 INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 378782 as yet unmatched pairs. 12989 records in RAM. INFO 2026-06-08 08:39:28 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr9:127,824,401 INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 377004 as yet unmatched pairs. 11211 records in RAM. INFO 2026-06-08 08:39:31 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr9:128,615,717 INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 375688 as yet unmatched pairs. 9894 records in RAM. INFO 2026-06-08 08:39:33 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr9:130,458,446 INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 374370 as yet unmatched pairs. 8574 records in RAM. INFO 2026-06-08 08:39:36 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 3s. Last read position: chr9:132,328,669 INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 372964 as yet unmatched pairs. 7168 records in RAM. INFO 2026-06-08 08:39:39 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr9:134,730,422 INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 371827 as yet unmatched pairs. 6021 records in RAM. INFO 2026-06-08 08:39:41 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr9:134,820,169 INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 371392 as yet unmatched pairs. 5586 records in RAM. INFO 2026-06-08 08:39:43 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 2s. Last read position: chr9:136,500,824 INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 368989 as yet unmatched pairs. 3183 records in RAM. INFO 2026-06-08 08:39:46 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr9:137,040,035 INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 367806 as yet unmatched pairs. 1999 records in RAM. INFO 2026-06-08 08:39:48 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr10:356,459 INFO 2026-06-08 08:39:48 MarkDuplicates Tracking 365861 as yet unmatched pairs. 20904 records in RAM. INFO 2026-06-08 08:39:50 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr10:12,155,772 INFO 2026-06-08 08:39:50 MarkDuplicates Tracking 364536 as yet unmatched pairs. 19577 records in RAM. INFO 2026-06-08 08:39:52 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr10:24,543,719 INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 363230 as yet unmatched pairs. 18266 records in RAM. INFO 2026-06-08 08:39:55 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr10:32,018,355 INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 362935 as yet unmatched pairs. 17971 records in RAM. INFO 2026-06-08 08:39:57 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr10:38,054,922 INFO 2026-06-08 08:39:57 MarkDuplicates Tracking 361215 as yet unmatched pairs. 16249 records in RAM. INFO 2026-06-08 08:39:59 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 2s. Last read position: chr10:48,451,050 INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 359919 as yet unmatched pairs. 14953 records in RAM. INFO 2026-06-08 08:40:03 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 3s. Last read position: chr10:63,594,803 INFO 2026-06-08 08:40:03 MarkDuplicates Tracking 359048 as yet unmatched pairs. 14082 records in RAM. INFO 2026-06-08 08:40:05 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr10:72,274,180 INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 357781 as yet unmatched pairs. 12815 records in RAM. INFO 2026-06-08 08:40:08 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr10:74,118,050 INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 356378 as yet unmatched pairs. 11411 records in RAM. INFO 2026-06-08 08:40:11 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 2s. Last read position: chr10:79,841,875 INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 355174 as yet unmatched pairs. 10207 records in RAM. INFO 2026-06-08 08:41:42 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 91s. Last read position: chr10:88,941,350 INFO 2026-06-08 08:41:42 MarkDuplicates Tracking 354663 as yet unmatched pairs. 9694 records in RAM. INFO 2026-06-08 08:41:45 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 2s. Last read position: chr10:95,868,767 INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 353117 as yet unmatched pairs. 8148 records in RAM. INFO 2026-06-08 08:41:48 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 3s. Last read position: chr10:101,002,742 INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 351624 as yet unmatched pairs. 6655 records in RAM. INFO 2026-06-08 08:41:51 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr10:103,424,993 INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 350114 as yet unmatched pairs. 5132 records in RAM. INFO 2026-06-08 08:41:54 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr10:110,881,422 INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 348832 as yet unmatched pairs. 3849 records in RAM. INFO 2026-06-08 08:41:58 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 3s. Last read position: chr10:119,575,744 INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 347926 as yet unmatched pairs. 2934 records in RAM. INFO 2026-06-08 08:42:01 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 3s. Last read position: chr10:125,852,418 INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 346490 as yet unmatched pairs. 1492 records in RAM. INFO 2026-06-08 08:42:05 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 3s. Last read position: chr11:214,250 INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 344944 as yet unmatched pairs. 38555 records in RAM. INFO 2026-06-08 08:42:08 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 3s. Last read position: chr11:430,328 INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 343706 as yet unmatched pairs. 37316 records in RAM. INFO 2026-06-08 08:42:10 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr11:1,083,505 INFO 2026-06-08 08:42:10 MarkDuplicates Tracking 342346 as yet unmatched pairs. 35955 records in RAM. INFO 2026-06-08 08:42:12 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr11:2,572,952 INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 340943 as yet unmatched pairs. 34552 records in RAM. INFO 2026-06-08 08:42:15 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr11:6,622,547 INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 339507 as yet unmatched pairs. 33116 records in RAM. INFO 2026-06-08 08:42:17 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 2s. Last read position: chr11:10,799,660 INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 339156 as yet unmatched pairs. 32765 records in RAM. INFO 2026-06-08 08:42:19 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 2s. Last read position: chr11:17,094,291 INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 336854 as yet unmatched pairs. 30463 records in RAM. INFO 2026-06-08 08:42:21 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 2s. Last read position: chr11:34,076,409 INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 335635 as yet unmatched pairs. 29242 records in RAM. INFO 2026-06-08 08:42:24 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr11:46,316,330 INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 334469 as yet unmatched pairs. 28076 records in RAM. INFO 2026-06-08 08:42:26 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 2s. Last read position: chr11:48,136,048 INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 332917 as yet unmatched pairs. 26523 records in RAM. INFO 2026-06-08 08:42:29 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 3s. Last read position: chr11:59,211,366 INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 331419 as yet unmatched pairs. 25025 records in RAM. INFO 2026-06-08 08:42:32 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 3s. Last read position: chr11:61,965,413 INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 332541 as yet unmatched pairs. 26145 records in RAM. INFO 2026-06-08 08:42:36 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 3s. Last read position: chr11:62,526,191 INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 329285 as yet unmatched pairs. 22889 records in RAM. INFO 2026-06-08 08:42:38 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 2s. Last read position: chr11:62,595,005 INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 328057 as yet unmatched pairs. 21659 records in RAM. INFO 2026-06-08 08:42:41 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:64,219,241 INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 326505 as yet unmatched pairs. 20107 records in RAM. INFO 2026-06-08 08:42:43 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 2s. Last read position: chr11:65,044,531 INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 324978 as yet unmatched pairs. 18580 records in RAM. INFO 2026-06-08 08:42:47 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 3s. Last read position: chr11:65,582,861 INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 323491 as yet unmatched pairs. 17092 records in RAM. INFO 2026-06-08 08:42:50 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 3s. Last read position: chr11:65,977,594 INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 322052 as yet unmatched pairs. 15653 records in RAM. INFO 2026-06-08 08:42:53 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr11:67,254,271 INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 320550 as yet unmatched pairs. 14151 records in RAM. INFO 2026-06-08 08:42:55 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 2s. Last read position: chr11:68,262,176 INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 319192 as yet unmatched pairs. 12792 records in RAM. INFO 2026-06-08 08:42:57 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 2s. Last read position: chr11:71,485,585 INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 317821 as yet unmatched pairs. 11411 records in RAM. INFO 2026-06-08 08:43:00 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 2s. Last read position: chr11:73,716,317 INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 316758 as yet unmatched pairs. 10348 records in RAM. INFO 2026-06-08 08:43:02 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr11:77,191,354 INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 315197 as yet unmatched pairs. 8779 records in RAM. INFO 2026-06-08 08:43:04 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr11:94,188,538 INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 314041 as yet unmatched pairs. 7623 records in RAM. INFO 2026-06-08 08:43:07 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr11:105,044,415 INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 312794 as yet unmatched pairs. 6374 records in RAM. INFO 2026-06-08 08:43:09 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 2s. Last read position: chr11:117,204,215 INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 311762 as yet unmatched pairs. 5342 records in RAM. INFO 2026-06-08 08:43:13 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 3s. Last read position: chr11:118,896,359 INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 310841 as yet unmatched pairs. 4397 records in RAM. INFO 2026-06-08 08:43:16 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 3s. Last read position: chr11:120,442,162 INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 309695 as yet unmatched pairs. 3251 records in RAM. INFO 2026-06-08 08:43:19 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 3s. Last read position: chr11:126,266,602 INFO 2026-06-08 08:43:19 MarkDuplicates Tracking 307942 as yet unmatched pairs. 1498 records in RAM. INFO 2026-06-08 08:43:22 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 3s. Last read position: chr12:307,876 INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 306442 as yet unmatched pairs. 32957 records in RAM. INFO 2026-06-08 08:43:25 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 3s. Last read position: chr12:6,013,486 INFO 2026-06-08 08:43:25 MarkDuplicates Tracking 305267 as yet unmatched pairs. 31777 records in RAM. INFO 2026-06-08 08:43:28 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr12:6,673,235 INFO 2026-06-08 08:43:28 MarkDuplicates Tracking 303816 as yet unmatched pairs. 30326 records in RAM. INFO 2026-06-08 08:43:30 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr12:7,080,779 INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 303335 as yet unmatched pairs. 29844 records in RAM. INFO 2026-06-08 08:43:33 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 2s. Last read position: chr12:9,695,975 INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 301220 as yet unmatched pairs. 27729 records in RAM. INFO 2026-06-08 08:43:35 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:14,944,789 INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 300619 as yet unmatched pairs. 27128 records in RAM. INFO 2026-06-08 08:43:37 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr12:31,104,025 INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 298965 as yet unmatched pairs. 25464 records in RAM. INFO 2026-06-08 08:43:40 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 2s. Last read position: chr12:47,855,568 INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 297788 as yet unmatched pairs. 24287 records in RAM. INFO 2026-06-08 08:43:43 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 3s. Last read position: chr12:49,128,629 INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 296781 as yet unmatched pairs. 23279 records in RAM. INFO 2026-06-08 08:43:46 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:50,222,097 INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 295617 as yet unmatched pairs. 22115 records in RAM. INFO 2026-06-08 08:43:49 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 3s. Last read position: chr12:52,949,223 INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 295146 as yet unmatched pairs. 21637 records in RAM. INFO 2026-06-08 08:43:52 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 3s. Last read position: chr12:53,462,504 INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 293867 as yet unmatched pairs. 20358 records in RAM. INFO 2026-06-08 08:43:56 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 3s. Last read position: chr12:55,725,575 INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 292313 as yet unmatched pairs. 18803 records in RAM. INFO 2026-06-08 08:43:59 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 3s. Last read position: chr12:56,272,591 INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 290660 as yet unmatched pairs. 17150 records in RAM. INFO 2026-06-08 08:44:02 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 3s. Last read position: chr12:57,096,902 INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 290386 as yet unmatched pairs. 16876 records in RAM. INFO 2026-06-08 08:44:05 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 3s. Last read position: chr12:57,191,389 INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 288268 as yet unmatched pairs. 14758 records in RAM. INFO 2026-06-08 08:44:08 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 3s. Last read position: chr12:57,616,810 INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 286717 as yet unmatched pairs. 13205 records in RAM. INFO 2026-06-08 08:44:12 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 3s. Last read position: chr12:68,632,308 INFO 2026-06-08 08:44:12 MarkDuplicates Tracking 285724 as yet unmatched pairs. 12209 records in RAM. INFO 2026-06-08 08:44:15 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 3s. Last read position: chr12:77,027,926 INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 284285 as yet unmatched pairs. 10770 records in RAM. INFO 2026-06-08 08:44:18 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 2s. Last read position: chr12:94,305,019 INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 283167 as yet unmatched pairs. 9652 records in RAM. INFO 2026-06-08 08:44:20 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr12:103,996,828 INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 281999 as yet unmatched pairs. 8484 records in RAM. INFO 2026-06-08 08:44:23 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr12:109,947,460 INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 280833 as yet unmatched pairs. 7316 records in RAM. INFO 2026-06-08 08:44:26 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr12:112,408,532 INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 279364 as yet unmatched pairs. 5846 records in RAM. INFO 2026-06-08 08:44:29 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr12:119,690,434 INFO 2026-06-08 08:44:29 MarkDuplicates Tracking 278176 as yet unmatched pairs. 4657 records in RAM. INFO 2026-06-08 08:44:32 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 2s. Last read position: chr12:121,817,497 INFO 2026-06-08 08:44:32 MarkDuplicates Tracking 276885 as yet unmatched pairs. 3366 records in RAM. INFO 2026-06-08 08:44:34 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr12:124,336,962 INFO 2026-06-08 08:44:34 MarkDuplicates Tracking 276100 as yet unmatched pairs. 2581 records in RAM. INFO 2026-06-08 08:44:36 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 2s. Last read position: chr12:132,076,514 INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 274409 as yet unmatched pairs. 890 records in RAM. INFO 2026-06-08 08:44:38 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr13:20,961,317 INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 272974 as yet unmatched pairs. 10170 records in RAM. INFO 2026-06-08 08:44:41 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 2s. Last read position: chr13:30,463,295 INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 272123 as yet unmatched pairs. 9316 records in RAM. INFO 2026-06-08 08:44:44 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr13:39,012,754 INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 270756 as yet unmatched pairs. 7949 records in RAM. INFO 2026-06-08 08:44:46 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr13:45,969,184 INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 269405 as yet unmatched pairs. 6598 records in RAM. INFO 2026-06-08 08:44:48 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr13:73,075,739 INFO 2026-06-08 08:44:48 MarkDuplicates Tracking 268347 as yet unmatched pairs. 5539 records in RAM. INFO 2026-06-08 08:44:50 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr13:98,457,227 INFO 2026-06-08 08:44:50 MarkDuplicates Tracking 267148 as yet unmatched pairs. 4339 records in RAM. INFO 2026-06-08 08:44:52 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr13:110,177,914 INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 265646 as yet unmatched pairs. 2837 records in RAM. INFO 2026-06-08 08:44:56 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 3s. Last read position: chr13:110,506,509 INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 264480 as yet unmatched pairs. 1671 records in RAM. INFO 2026-06-08 08:44:58 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr14:20,457,107 INFO 2026-06-08 08:44:58 MarkDuplicates Tracking 262983 as yet unmatched pairs. 17225 records in RAM. INFO 2026-06-08 08:45:00 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr14:22,876,317 INFO 2026-06-08 08:45:00 MarkDuplicates Tracking 261549 as yet unmatched pairs. 15776 records in RAM. INFO 2026-06-08 08:45:03 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr14:24,368,347 INFO 2026-06-08 08:45:03 MarkDuplicates Tracking 259888 as yet unmatched pairs. 14115 records in RAM. INFO 2026-06-08 08:45:05 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 2s. Last read position: chr14:39,314,783 INFO 2026-06-08 08:45:05 MarkDuplicates Tracking 258529 as yet unmatched pairs. 12754 records in RAM. INFO 2026-06-08 08:45:08 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr14:55,137,380 INFO 2026-06-08 08:45:08 MarkDuplicates Tracking 257735 as yet unmatched pairs. 11953 records in RAM. INFO 2026-06-08 08:45:10 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 2s. Last read position: chr14:64,522,787 INFO 2026-06-08 08:45:10 MarkDuplicates Tracking 256044 as yet unmatched pairs. 10262 records in RAM. INFO 2026-06-08 08:45:12 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr14:69,768,758 INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 255248 as yet unmatched pairs. 9466 records in RAM. INFO 2026-06-08 08:45:14 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr14:74,812,673 INFO 2026-06-08 08:45:14 MarkDuplicates Tracking 253489 as yet unmatched pairs. 7705 records in RAM. INFO 2026-06-08 08:45:16 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 2s. Last read position: chr14:91,272,860 INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 252368 as yet unmatched pairs. 6583 records in RAM. INFO 2026-06-08 08:45:19 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr14:100,123,561 INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 251180 as yet unmatched pairs. 5389 records in RAM. INFO 2026-06-08 08:45:22 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 3s. Last read position: chr14:102,981,004 INFO 2026-06-08 08:45:22 MarkDuplicates Tracking 249806 as yet unmatched pairs. 4013 records in RAM. INFO 2026-06-08 08:45:26 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:15:16s. Time for last 1,000,000: 3s. Last read position: chr14:104,943,468 INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 248469 as yet unmatched pairs. 2676 records in RAM. INFO 2026-06-08 08:45:29 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr14:105,625,883 INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 247179 as yet unmatched pairs. 1386 records in RAM. INFO 2026-06-08 08:45:31 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:15:22s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,344 INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 247143 as yet unmatched pairs. 1349 records in RAM. INFO 2026-06-08 08:45:35 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 3s. Last read position: chr15:28,246,833 INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 245229 as yet unmatched pairs. 19297 records in RAM. INFO 2026-06-08 08:45:38 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 2s. Last read position: chr15:32,732,172 INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 247556 as yet unmatched pairs. 21624 records in RAM. INFO 2026-06-08 08:45:40 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr15:39,582,536 INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 243393 as yet unmatched pairs. 17461 records in RAM. INFO 2026-06-08 08:45:43 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr15:41,231,375 INFO 2026-06-08 08:45:43 MarkDuplicates Tracking 241586 as yet unmatched pairs. 15654 records in RAM. INFO 2026-06-08 08:45:45 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr15:43,521,548 INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 240296 as yet unmatched pairs. 14364 records in RAM. INFO 2026-06-08 08:45:48 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr15:45,107,394 INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 238889 as yet unmatched pairs. 12957 records in RAM. INFO 2026-06-08 08:45:50 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr15:51,474,487 INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 237687 as yet unmatched pairs. 11755 records in RAM. INFO 2026-06-08 08:45:53 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 3s. Last read position: chr15:60,347,624 INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 237019 as yet unmatched pairs. 11087 records in RAM. INFO 2026-06-08 08:45:57 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 3s. Last read position: chr15:64,134,761 INFO 2026-06-08 08:45:57 MarkDuplicates Tracking 235279 as yet unmatched pairs. 9347 records in RAM. INFO 2026-06-08 08:46:00 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 3s. Last read position: chr15:68,229,544 INFO 2026-06-08 08:46:00 MarkDuplicates Tracking 233676 as yet unmatched pairs. 7744 records in RAM. INFO 2026-06-08 08:46:03 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 3s. Last read position: chr15:72,758,107 INFO 2026-06-08 08:46:03 MarkDuplicates Tracking 232403 as yet unmatched pairs. 6471 records in RAM. INFO 2026-06-08 08:46:06 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 3s. Last read position: chr15:75,207,265 INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 230981 as yet unmatched pairs. 5048 records in RAM. INFO 2026-06-08 08:46:10 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 3s. Last read position: chr15:78,892,212 INFO 2026-06-08 08:46:10 MarkDuplicates Tracking 229952 as yet unmatched pairs. 4019 records in RAM. INFO 2026-06-08 08:46:13 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr15:85,741,210 INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 228476 as yet unmatched pairs. 2543 records in RAM. INFO 2026-06-08 08:46:15 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr15:90,629,300 INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 227360 as yet unmatched pairs. 1427 records in RAM. INFO 2026-06-08 08:46:17 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr15:101,973,420 INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 225954 as yet unmatched pairs. 18 records in RAM. INFO 2026-06-08 08:46:20 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:16:10s. Time for last 1,000,000: 2s. Last read position: chr16:730,883 INFO 2026-06-08 08:46:20 MarkDuplicates Tracking 224542 as yet unmatched pairs. 28622 records in RAM. INFO 2026-06-08 08:46:22 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 2s. Last read position: chr16:1,998,490 INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 223011 as yet unmatched pairs. 27091 records in RAM. INFO 2026-06-08 08:46:24 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr16:2,514,043 INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 221701 as yet unmatched pairs. 25781 records in RAM. INFO 2026-06-08 08:46:26 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 1s. Last read position: chr16:2,971,579 INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 220318 as yet unmatched pairs. 24398 records in RAM. INFO 2026-06-08 08:46:28 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr16:4,673,589 INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 218905 as yet unmatched pairs. 22985 records in RAM. INFO 2026-06-08 08:46:31 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr16:14,246,628 INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 217866 as yet unmatched pairs. 21946 records in RAM. INFO 2026-06-08 08:46:32 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr16:15,127,516 INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 217018 as yet unmatched pairs. 21098 records in RAM. INFO 2026-06-08 08:46:34 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 1s. Last read position: chr16:16,076,385 INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 215905 as yet unmatched pairs. 19985 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr16:16,369,063 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 215622 as yet unmatched pairs. 19702 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:16:29s. Time for last 1,000,000: 2s. Last read position: chr16:18,389,823 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 215126 as yet unmatched pairs. 19206 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr16:21,250,252 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 214036 as yet unmatched pairs. 18116 records in RAM. INFO 2026-06-08 08:46:44 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:16:34s. Time for last 1,000,000: 2s. Last read position: chr16:21,896,588 INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 213661 as yet unmatched pairs. 17741 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr16:24,569,269 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 212929 as yet unmatched pairs. 17009 records in RAM. INFO 2026-06-08 08:46:51 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 3s. Last read position: chr16:28,832,844 INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 212101 as yet unmatched pairs. 16181 records in RAM. INFO 2026-06-08 08:46:53 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:16:44s. Time for last 1,000,000: 2s. Last read position: chr16:29,744,314 INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 211242 as yet unmatched pairs. 15322 records in RAM. INFO 2026-06-08 08:46:56 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:16:46s. Time for last 1,000,000: 2s. Last read position: chr16:30,117,720 INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 210529 as yet unmatched pairs. 14609 records in RAM. INFO 2026-06-08 08:46:59 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 2s. Last read position: chr16:30,723,601 INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 209123 as yet unmatched pairs. 13203 records in RAM. INFO 2026-06-08 08:47:02 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 2s. Last read position: chr16:31,473,491 INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 207829 as yet unmatched pairs. 11907 records in RAM. INFO 2026-06-08 08:47:05 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 3s. Last read position: chr16:50,326,308 INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 206437 as yet unmatched pairs. 10514 records in RAM. INFO 2026-06-08 08:47:08 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 3s. Last read position: chr16:55,498,298 INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 205487 as yet unmatched pairs. 9562 records in RAM. INFO 2026-06-08 08:47:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 3s. Last read position: chr16:58,534,243 INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 203928 as yet unmatched pairs. 8003 records in RAM. INFO 2026-06-08 08:47:15 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 3s. Last read position: chr16:67,663,440 INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 202511 as yet unmatched pairs. 6585 records in RAM. INFO 2026-06-08 08:47:18 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 3s. Last read position: chr16:70,258,066 INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 201201 as yet unmatched pairs. 5275 records in RAM. INFO 2026-06-08 08:47:21 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 2s. Last read position: chr16:75,242,781 INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 200275 as yet unmatched pairs. 4349 records in RAM. INFO 2026-06-08 08:47:24 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 2s. Last read position: chr16:87,412,102 INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 198626 as yet unmatched pairs. 2699 records in RAM. INFO 2026-06-08 08:47:27 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 3s. Last read position: chr16:88,736,712 INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 197349 as yet unmatched pairs. 1417 records in RAM. INFO 2026-06-08 08:47:32 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 4s. Last read position: chr17:1,012,509 INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 195800 as yet unmatched pairs. 85602 records in RAM. INFO 2026-06-08 08:47:35 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 3s. Last read position: chr17:1,895,055 INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 194358 as yet unmatched pairs. 84160 records in RAM. INFO 2026-06-08 08:47:38 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 3s. Last read position: chr17:4,833,632 INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 193114 as yet unmatched pairs. 82916 records in RAM. INFO 2026-06-08 08:47:41 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 3s. Last read position: chr17:7,240,853 INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 192474 as yet unmatched pairs. 82276 records in RAM. INFO 2026-06-08 08:47:44 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 3s. Last read position: chr17:7,577,692 INFO 2026-06-08 08:47:44 MarkDuplicates Tracking 190767 as yet unmatched pairs. 80569 records in RAM. INFO 2026-06-08 08:47:48 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 3s. Last read position: chr17:8,623,043 INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 189013 as yet unmatched pairs. 78815 records in RAM. INFO 2026-06-08 08:47:51 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 3s. Last read position: chr17:17,213,804 INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 187761 as yet unmatched pairs. 77563 records in RAM. INFO 2026-06-08 08:47:54 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 3s. Last read position: chr17:21,284,903 INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 186652 as yet unmatched pairs. 76442 records in RAM. INFO 2026-06-08 08:47:58 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 3s. Last read position: chr17:29,287,486 INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 185458 as yet unmatched pairs. 75247 records in RAM. INFO 2026-06-08 08:48:01 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 3s. Last read position: chr17:35,265,483 INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 184222 as yet unmatched pairs. 74011 records in RAM. INFO 2026-06-08 08:48:04 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 2s. Last read position: chr17:38,719,524 INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 183351 as yet unmatched pairs. 73140 records in RAM. INFO 2026-06-08 08:48:07 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 3s. Last read position: chr17:39,727,823 INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 181768 as yet unmatched pairs. 71557 records in RAM. INFO 2026-06-08 08:48:11 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 3s. Last read position: chr17:41,763,001 INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 180305 as yet unmatched pairs. 70093 records in RAM. INFO 2026-06-08 08:48:14 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 3s. Last read position: chr17:42,719,173 INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 178767 as yet unmatched pairs. 68555 records in RAM. INFO 2026-06-08 08:48:17 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 3s. Last read position: chr17:44,744,078 INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 177496 as yet unmatched pairs. 67284 records in RAM. INFO 2026-06-08 08:48:20 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 2s. Last read position: chr17:47,677,017 INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 176444 as yet unmatched pairs. 66232 records in RAM. INFO 2026-06-08 08:48:23 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 3s. Last read position: chr17:50,185,487 INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 191787 as yet unmatched pairs. 81575 records in RAM. INFO 2026-06-08 08:48:27 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 3s. Last read position: chr17:50,185,896 INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 180602 as yet unmatched pairs. 70390 records in RAM. INFO 2026-06-08 08:48:30 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 3s. Last read position: chr17:50,186,475 INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 177429 as yet unmatched pairs. 67217 records in RAM. INFO 2026-06-08 08:48:33 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 3s. Last read position: chr17:50,186,866 INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 190756 as yet unmatched pairs. 80544 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 3s. Last read position: chr17:50,187,066 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 197085 as yet unmatched pairs. 86873 records in RAM. INFO 2026-06-08 08:48:40 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 3s. Last read position: chr17:50,187,875 INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 196257 as yet unmatched pairs. 86044 records in RAM. INFO 2026-06-08 08:48:44 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 3s. Last read position: chr17:50,187,953 INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 209661 as yet unmatched pairs. 99448 records in RAM. INFO 2026-06-08 08:48:48 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 3s. Last read position: chr17:50,188,538 INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 190840 as yet unmatched pairs. 80627 records in RAM. INFO 2026-06-08 08:48:51 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 3s. Last read position: chr17:50,188,627 INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 196957 as yet unmatched pairs. 86744 records in RAM. INFO 2026-06-08 08:48:54 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 3s. Last read position: chr17:50,188,926 INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 197421 as yet unmatched pairs. 87208 records in RAM. INFO 2026-06-08 08:48:58 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:18:48s. Time for last 1,000,000: 3s. Last read position: chr17:50,189,221 INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 187144 as yet unmatched pairs. 76931 records in RAM. INFO 2026-06-08 08:49:01 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:18:51s. Time for last 1,000,000: 3s. Last read position: chr17:50,189,432 INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 198158 as yet unmatched pairs. 87945 records in RAM. INFO 2026-06-08 08:49:05 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 4s. Last read position: chr17:50,189,523 INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 207226 as yet unmatched pairs. 97013 records in RAM. INFO 2026-06-08 08:49:09 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 3s. Last read position: chr17:50,189,880 INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 192688 as yet unmatched pairs. 82475 records in RAM. INFO 2026-06-08 08:49:12 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 3s. Last read position: chr17:50,190,050 INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 202974 as yet unmatched pairs. 92761 records in RAM. INFO 2026-06-08 08:49:15 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 3s. Last read position: chr17:50,190,361 INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 196500 as yet unmatched pairs. 86278 records in RAM. INFO 2026-06-08 08:49:19 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 3s. Last read position: chr17:50,190,886 INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 177700 as yet unmatched pairs. 67478 records in RAM. INFO 2026-06-08 08:49:22 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 3s. Last read position: chr17:50,191,787 INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 171818 as yet unmatched pairs. 61596 records in RAM. INFO 2026-06-08 08:49:26 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 4s. Last read position: chr17:50,191,979 INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 187115 as yet unmatched pairs. 76893 records in RAM. INFO 2026-06-08 08:49:30 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 3s. Last read position: chr17:50,192,651 INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 179534 as yet unmatched pairs. 69312 records in RAM. INFO 2026-06-08 08:49:33 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 3s. Last read position: chr17:50,192,833 INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 191026 as yet unmatched pairs. 80804 records in RAM. INFO 2026-06-08 08:49:36 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 3s. Last read position: chr17:50,193,950 INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 186703 as yet unmatched pairs. 76481 records in RAM. INFO 2026-06-08 08:49:40 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 3s. Last read position: chr17:50,194,129 INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 179835 as yet unmatched pairs. 69612 records in RAM. INFO 2026-06-08 08:49:43 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 3s. Last read position: chr17:50,194,376 INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 177107 as yet unmatched pairs. 66884 records in RAM. INFO 2026-06-08 08:49:47 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 3s. Last read position: chr17:50,194,590 INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 170240 as yet unmatched pairs. 60017 records in RAM. INFO 2026-06-08 08:49:50 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 3s. Last read position: chr17:50,194,767 INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 171044 as yet unmatched pairs. 60821 records in RAM. INFO 2026-06-08 08:49:53 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 3s. Last read position: chr17:50,195,244 INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 170508 as yet unmatched pairs. 60285 records in RAM. INFO 2026-06-08 08:49:56 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 3s. Last read position: chr17:50,195,563 INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 169565 as yet unmatched pairs. 59342 records in RAM. INFO 2026-06-08 08:50:00 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 3s. Last read position: chr17:50,195,654 INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 172377 as yet unmatched pairs. 62154 records in RAM. INFO 2026-06-08 08:50:03 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 3s. Last read position: chr17:50,196,167 INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 188397 as yet unmatched pairs. 78174 records in RAM. INFO 2026-06-08 08:50:07 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 4s. Last read position: chr17:50,196,335 INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 179196 as yet unmatched pairs. 68972 records in RAM. INFO 2026-06-08 08:50:11 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 3s. Last read position: chr17:50,196,626 INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 165469 as yet unmatched pairs. 55245 records in RAM. INFO 2026-06-08 08:50:15 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 3s. Last read position: chr17:50,197,029 INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 188620 as yet unmatched pairs. 78395 records in RAM. INFO 2026-06-08 08:50:19 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 3s. Last read position: chr17:50,197,737 INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 177826 as yet unmatched pairs. 67601 records in RAM. INFO 2026-06-08 08:50:22 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 3s. Last read position: chr17:50,198,165 INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 151477 as yet unmatched pairs. 41252 records in RAM. INFO 2026-06-08 08:50:26 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,226 INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 145210 as yet unmatched pairs. 34985 records in RAM. INFO 2026-06-08 08:50:30 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,307 INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 141472 as yet unmatched pairs. 31247 records in RAM. INFO 2026-06-08 08:50:33 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 3s. Last read position: chr17:50,199,771 INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 137911 as yet unmatched pairs. 27686 records in RAM. INFO 2026-06-08 08:50:36 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 3s. Last read position: chr17:50,358,338 INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 123100 as yet unmatched pairs. 12875 records in RAM. INFO 2026-06-08 08:50:40 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 3s. Last read position: chr17:59,647,513 INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 122566 as yet unmatched pairs. 12341 records in RAM. INFO 2026-06-08 08:50:44 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 3s. Last read position: chr17:62,667,395 INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 120600 as yet unmatched pairs. 10374 records in RAM. INFO 2026-06-08 08:50:47 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 3s. Last read position: chr17:65,536,797 INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 119187 as yet unmatched pairs. 8961 records in RAM. INFO 2026-06-08 08:50:50 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 3s. Last read position: chr17:75,020,598 INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 117785 as yet unmatched pairs. 7559 records in RAM. INFO 2026-06-08 08:50:53 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 3s. Last read position: chr17:75,827,986 INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 116578 as yet unmatched pairs. 6352 records in RAM. INFO 2026-06-08 08:50:56 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 2s. Last read position: chr17:78,121,639 INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 115069 as yet unmatched pairs. 4843 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 3s. Last read position: chr17:80,332,459 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 113868 as yet unmatched pairs. 3642 records in RAM. INFO 2026-06-08 08:51:02 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 3s. Last read position: chr17:81,666,858 INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 112393 as yet unmatched pairs. 2166 records in RAM. INFO 2026-06-08 08:51:05 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 3s. Last read position: chr17:82,237,447 INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 111198 as yet unmatched pairs. 971 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 3s. Last read position: chr18:9,258,883 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 109482 as yet unmatched pairs. 4471 records in RAM. INFO 2026-06-08 08:51:11 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 3s. Last read position: chr18:23,901,296 INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 108626 as yet unmatched pairs. 3613 records in RAM. INFO 2026-06-08 08:51:14 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 3s. Last read position: chr18:36,796,916 INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 107226 as yet unmatched pairs. 2212 records in RAM. INFO 2026-06-08 08:51:17 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 3s. Last read position: chr18:58,939,484 INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 106253 as yet unmatched pairs. 1238 records in RAM. INFO 2026-06-08 08:51:21 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 3s. Last read position: chr19:579,529 INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 105093 as yet unmatched pairs. 42790 records in RAM. INFO 2026-06-08 08:51:24 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 3s. Last read position: chr19:1,108,648 INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 103442 as yet unmatched pairs. 41139 records in RAM. INFO 2026-06-08 08:51:27 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 3s. Last read position: chr19:2,039,523 INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 101693 as yet unmatched pairs. 39389 records in RAM. INFO 2026-06-08 08:51:30 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 3s. Last read position: chr19:3,648,648 INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 100115 as yet unmatched pairs. 37811 records in RAM. INFO 2026-06-08 08:51:33 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 3s. Last read position: chr19:5,690,277 INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 98678 as yet unmatched pairs. 36374 records in RAM. INFO 2026-06-08 08:51:37 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 3s. Last read position: chr19:6,707,161 INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 97889 as yet unmatched pairs. 35585 records in RAM. INFO 2026-06-08 08:51:40 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 3s. Last read position: chr19:7,905,765 INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 96224 as yet unmatched pairs. 33920 records in RAM. INFO 2026-06-08 08:51:43 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 3s. Last read position: chr19:10,364,743 INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 94890 as yet unmatched pairs. 32586 records in RAM. INFO 2026-06-08 08:51:46 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 3s. Last read position: chr19:11,364,545 INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 93677 as yet unmatched pairs. 31373 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 3s. Last read position: chr19:13,081,722 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 92409 as yet unmatched pairs. 30105 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 3s. Last read position: chr19:15,110,636 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 90919 as yet unmatched pairs. 28614 records in RAM. INFO 2026-06-08 08:51:56 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 3s. Last read position: chr19:15,458,567 INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 89349 as yet unmatched pairs. 27044 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 3s. Last read position: chr19:17,733,362 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 87878 as yet unmatched pairs. 25573 records in RAM. INFO 2026-06-08 08:52:02 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 3s. Last read position: chr19:18,787,603 INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 86548 as yet unmatched pairs. 24243 records in RAM. INFO 2026-06-08 08:52:05 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 2s. Last read position: chr19:33,206,201 INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 85053 as yet unmatched pairs. 22748 records in RAM. INFO 2026-06-08 08:52:08 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 3s. Last read position: chr19:35,721,018 INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 83606 as yet unmatched pairs. 21301 records in RAM. INFO 2026-06-08 08:52:11 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 3s. Last read position: chr19:38,620,363 INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 82806 as yet unmatched pairs. 20501 records in RAM. INFO 2026-06-08 08:52:14 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 3s. Last read position: chr19:39,407,871 INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 81408 as yet unmatched pairs. 19103 records in RAM. INFO 2026-06-08 08:52:17 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 3s. Last read position: chr19:40,371,824 INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 79734 as yet unmatched pairs. 17429 records in RAM. INFO 2026-06-08 08:52:21 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 3s. Last read position: chr19:41,708,709 INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 80330 as yet unmatched pairs. 18025 records in RAM. INFO 2026-06-08 08:52:24 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 3s. Last read position: chr19:41,727,240 INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 79740 as yet unmatched pairs. 17435 records in RAM. INFO 2026-06-08 08:52:27 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 3s. Last read position: chr19:42,287,093 INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 76192 as yet unmatched pairs. 13887 records in RAM. INFO 2026-06-08 08:52:30 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 3s. Last read position: chr19:44,871,984 INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 74735 as yet unmatched pairs. 12429 records in RAM. INFO 2026-06-08 08:52:33 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 3s. Last read position: chr19:45,831,389 INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 73098 as yet unmatched pairs. 10792 records in RAM. INFO 2026-06-08 08:52:36 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:22:26s. Time for last 1,000,000: 3s. Last read position: chr19:47,751,533 INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 71969 as yet unmatched pairs. 9662 records in RAM. INFO 2026-06-08 08:52:39 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 3s. Last read position: chr19:49,007,347 INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 70498 as yet unmatched pairs. 8191 records in RAM. INFO 2026-06-08 08:52:42 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:22:33s. Time for last 1,000,000: 3s. Last read position: chr19:49,614,975 INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 69066 as yet unmatched pairs. 6759 records in RAM. INFO 2026-06-08 08:52:46 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 3s. Last read position: chr19:50,290,949 INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 67439 as yet unmatched pairs. 5132 records in RAM. INFO 2026-06-08 08:52:49 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:22:39s. Time for last 1,000,000: 3s. Last read position: chr19:54,129,052 INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 65991 as yet unmatched pairs. 3684 records in RAM. INFO 2026-06-08 08:52:52 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 3s. Last read position: chr19:55,236,949 INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 64901 as yet unmatched pairs. 2594 records in RAM. INFO 2026-06-08 08:52:55 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 3s. Last read position: chr19:57,291,271 INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 63498 as yet unmatched pairs. 1191 records in RAM. INFO 2026-06-08 08:52:59 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 3s. Last read position: chr20:845,332 INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 62155 as yet unmatched pairs. 15720 records in RAM. INFO 2026-06-08 08:53:02 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 3s. Last read position: chr20:4,187,290 INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 60532 as yet unmatched pairs. 14097 records in RAM. INFO 2026-06-08 08:53:05 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:22:55s. Time for last 1,000,000: 2s. Last read position: chr20:17,954,010 INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 59294 as yet unmatched pairs. 12859 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 3s. Last read position: chr20:31,777,520 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 57782 as yet unmatched pairs. 11347 records in RAM. INFO 2026-06-08 08:53:11 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 3s. Last read position: chr20:35,280,758 INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 56608 as yet unmatched pairs. 10173 records in RAM. INFO 2026-06-08 08:53:15 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 3s. Last read position: chr20:37,403,171 INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 55266 as yet unmatched pairs. 8831 records in RAM. INFO 2026-06-08 08:53:18 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:23:08s. Time for last 1,000,000: 3s. Last read position: chr20:45,253,634 INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 53915 as yet unmatched pairs. 7480 records in RAM. INFO 2026-06-08 08:53:21 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 3s. Last read position: chr20:48,629,570 INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 52610 as yet unmatched pairs. 6175 records in RAM. INFO 2026-06-08 08:53:24 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 3s. Last read position: chr20:53,254,001 INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 51149 as yet unmatched pairs. 4714 records in RAM. INFO 2026-06-08 08:53:27 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:23:17s. Time for last 1,000,000: 3s. Last read position: chr20:61,976,182 INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 49644 as yet unmatched pairs. 3209 records in RAM. INFO 2026-06-08 08:53:30 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:23:20s. Time for last 1,000,000: 3s. Last read position: chr20:63,203,028 INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 47933 as yet unmatched pairs. 1498 records in RAM. INFO 2026-06-08 08:53:34 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:23:24s. Time for last 1,000,000: 3s. Last read position: chr21:5,022,632 INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 46435 as yet unmatched pairs. 9545 records in RAM. INFO 2026-06-08 08:53:36 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:23:27s. Time for last 1,000,000: 2s. Last read position: chr21:8,399,027 INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 45854 as yet unmatched pairs. 8958 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:23:29s. Time for last 1,000,000: 2s. Last read position: chr21:25,729,721 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 44674 as yet unmatched pairs. 7777 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 3s. Last read position: chr21:33,554,297 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 43517 as yet unmatched pairs. 6620 records in RAM. INFO 2026-06-08 08:53:45 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:23:35s. Time for last 1,000,000: 3s. Last read position: chr21:41,243,435 INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 42148 as yet unmatched pairs. 5251 records in RAM. INFO 2026-06-08 08:53:48 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 3s. Last read position: chr21:44,888,844 INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 41093 as yet unmatched pairs. 4195 records in RAM. INFO 2026-06-08 08:53:51 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:23:41s. Time for last 1,000,000: 2s. Last read position: chr21:45,992,038 INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 40079 as yet unmatched pairs. 3181 records in RAM. INFO 2026-06-08 08:53:54 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 3s. Last read position: chr21:46,122,123 INFO 2026-06-08 08:53:54 MarkDuplicates Tracking 38678 as yet unmatched pairs. 1780 records in RAM. INFO 2026-06-08 08:53:57 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 2s. Last read position: chr22:17,906,662 INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 36772 as yet unmatched pairs. 16935 records in RAM. INFO 2026-06-08 08:53:59 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 2s. Last read position: chr22:20,994,010 INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 35128 as yet unmatched pairs. 15291 records in RAM. INFO 2026-06-08 08:57:13 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:27:03s. Time for last 1,000,000: 193s. Last read position: chr22:23,833,609 INFO 2026-06-08 08:57:13 MarkDuplicates Tracking 33768 as yet unmatched pairs. 13931 records in RAM. INFO 2026-06-08 08:57:16 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:27:06s. Time for last 1,000,000: 2s. Last read position: chr22:29,050,907 INFO 2026-06-08 08:57:16 MarkDuplicates Tracking 32297 as yet unmatched pairs. 12460 records in RAM. INFO 2026-06-08 08:57:19 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:27:09s. Time for last 1,000,000: 3s. Last read position: chr22:30,626,495 INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 31026 as yet unmatched pairs. 11175 records in RAM. INFO 2026-06-08 08:57:22 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:27:12s. Time for last 1,000,000: 3s. Last read position: chr22:35,386,788 INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 29830 as yet unmatched pairs. 9979 records in RAM. INFO 2026-06-08 08:57:25 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:27:15s. Time for last 1,000,000: 3s. Last read position: chr22:36,306,459 INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 29281 as yet unmatched pairs. 9430 records in RAM. INFO 2026-06-08 08:57:28 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:27:18s. Time for last 1,000,000: 3s. Last read position: chr22:37,643,699 INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 27235 as yet unmatched pairs. 7384 records in RAM. INFO 2026-06-08 08:57:31 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:27:21s. Time for last 1,000,000: 3s. Last read position: chr22:38,722,811 INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 25813 as yet unmatched pairs. 5962 records in RAM. INFO 2026-06-08 08:57:34 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:27:24s. Time for last 1,000,000: 3s. Last read position: chr22:40,886,327 INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 24438 as yet unmatched pairs. 4587 records in RAM. INFO 2026-06-08 08:57:37 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:27:27s. Time for last 1,000,000: 3s. Last read position: chr22:42,602,975 INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 23182 as yet unmatched pairs. 3331 records in RAM. INFO 2026-06-08 08:57:40 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:27:30s. Time for last 1,000,000: 2s. Last read position: chr22:50,221,593 INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 21587 as yet unmatched pairs. 1736 records in RAM. INFO 2026-06-08 08:57:42 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:27:32s. Time for last 1,000,000: 2s. Last read position: chr22:50,776,670 INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 19953 as yet unmatched pairs. 102 records in RAM. INFO 2026-06-08 08:57:46 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:27:36s. Time for last 1,000,000: 3s. Last read position: chrX:3,322,420 INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 19089 as yet unmatched pairs. 16381 records in RAM. INFO 2026-06-08 08:57:49 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:27:39s. Time for last 1,000,000: 3s. Last read position: chrX:19,645,408 INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 17661 as yet unmatched pairs. 14950 records in RAM. INFO 2026-06-08 08:57:52 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:27:42s. Time for last 1,000,000: 2s. Last read position: chrX:41,198,683 INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 16631 as yet unmatched pairs. 13920 records in RAM. INFO 2026-06-08 08:57:55 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:27:45s. Time for last 1,000,000: 3s. Last read position: chrX:47,637,013 INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 15427 as yet unmatched pairs. 12716 records in RAM. INFO 2026-06-08 08:57:58 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:27:48s. Time for last 1,000,000: 2s. Last read position: chrX:52,061,987 INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 13919 as yet unmatched pairs. 11208 records in RAM. INFO 2026-06-08 08:58:01 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:27:51s. Time for last 1,000,000: 2s. Last read position: chrX:57,136,406 INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 12686 as yet unmatched pairs. 9975 records in RAM. INFO 2026-06-08 08:58:04 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 3s. Last read position: chrX:71,563,148 INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 11546 as yet unmatched pairs. 8835 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:27:57s. Time for last 1,000,000: 3s. Last read position: chrX:97,141,784 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 10135 as yet unmatched pairs. 7424 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:28:00s. Time for last 1,000,000: 2s. Last read position: chrX:118,766,945 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 9091 as yet unmatched pairs. 6379 records in RAM. INFO 2026-06-08 08:58:13 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:28:03s. Time for last 1,000,000: 3s. Last read position: chrX:136,675,049 INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 7746 as yet unmatched pairs. 5034 records in RAM. INFO 2026-06-08 08:58:16 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:28:06s. Time for last 1,000,000: 3s. Last read position: chrX:153,909,101 INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 6860 as yet unmatched pairs. 4147 records in RAM. INFO 2026-06-08 08:58:19 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:28:09s. Time for last 1,000,000: 3s. Last read position: chrX:154,354,945 INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 5597 as yet unmatched pairs. 2884 records in RAM. INFO 2026-06-08 08:58:22 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:28:12s. Time for last 1,000,000: 3s. Last read position: chrX:154,379,387 INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 3611 as yet unmatched pairs. 898 records in RAM. INFO 2026-06-08 08:58:25 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:28:15s. Time for last 1,000,000: 3s. Last read position: chrY:19,706,583 INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 2570 as yet unmatched pairs. 195 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:28:18s. Time for last 1,000,000: 2s. Last read position: GL000220.1:160,757 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 1269 as yet unmatched pairs. 1 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:28:20s. Time for last 1,000,000: 2s. Last read position: KI270741.1:122,359 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 2 as yet unmatched pairs. 0 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 523006863 records. 0 pairs never matched. INFO 2026-06-08 08:58:44 MarkDuplicates After buildSortedReadEndLists freeMemory: 204140968; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 08:58:44 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 08:58:52 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 08:58:52 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 08:59:09 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 08:59:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,163 INFO 2026-06-08 08:59:25 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-08 08:59:25 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,282 INFO 2026-06-08 08:59:31 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-08 08:59:31 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,305 INFO 2026-06-08 09:00:49 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:00:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,588 INFO 2026-06-08 09:00:49 OpticalDuplicateFinder Large duplicate set. size = 1748 INFO 2026-06-08 09:00:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,283 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1322 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,553 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 2203 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,225 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,838 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1111 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,113 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,525 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 2545 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,283 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,851 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,677 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1368 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,240 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1951 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,938 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1249 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,715 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 2065 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,642 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,540 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,208 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,801 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder Large duplicate set. size = 1047 INFO 2026-06-08 09:00:50 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,703 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1418 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,289 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,270 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1737 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,104 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,858 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1433 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,828 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1316 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,980 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1079 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,798 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 2073 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,849 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,408 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1006 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,208 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,651 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,268 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,394 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,224 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,214 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:00:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,009 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1581 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,928 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 2736 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,306 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,097 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1488 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,087 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1265 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,144 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 2928 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,754 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,519 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1019 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,732 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1267 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,475 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,248 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1295 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,056 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1607 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,373 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1542 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,560 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder Large duplicate set. size = 1204 INFO 2026-06-08 09:00:52 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,720 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,895 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,083 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,848 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1303 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,919 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1036 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,406 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,790 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1116 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,496 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,564 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,512 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1124 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,217 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1218 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,205 INFO 2026-06-08 09:00:53 OpticalDuplicateFinder Large duplicate set. size = 1744 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,046 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,557 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,191 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1351 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,714 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1545 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,872 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1187 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,448 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1846 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,022 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1413 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,385 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1279 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,060 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1293 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,988 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1089 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,307 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,243 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1231 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,845 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,288 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,473 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder Large duplicate set. size = 1422 INFO 2026-06-08 09:00:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,014 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder Large duplicate set. size = 1086 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,818 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder Large duplicate set. size = 1190 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,387 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder Large duplicate set. size = 1352 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,765 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:00:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,874 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1840 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,251 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,233 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,349 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,466 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,248 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,738 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,708 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 2310 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,905 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,153 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1816 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,266 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1973 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,868 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1273 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,377 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1608 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,942 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1327 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,863 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,988 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1551 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,283 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1400 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,578 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,428 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,202 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1074 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,989 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1825 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,967 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1021 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,687 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder Large duplicate set. size = 1338 INFO 2026-06-08 09:00:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,518 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1266 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,752 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1182 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,051 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,438 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1147 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,432 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1185 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,690 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1531 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,485 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 2095 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,139 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,235 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1651 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,586 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 3119 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,142 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,532 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,220 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1270 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,975 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,002 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1503 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,684 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1559 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,879 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1139 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,350 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1147 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,063 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,803 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1054 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,327 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1278 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,097 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1238 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,650 INFO 2026-06-08 09:00:57 OpticalDuplicateFinder Large duplicate set. size = 1586 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,663 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1056 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,903 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,788 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1965 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,734 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1101 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,366 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1186 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,225 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1610 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,148 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1138 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,613 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1492 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,251 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder Large duplicate set. size = 1065 INFO 2026-06-08 09:00:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,537 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,688 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,402 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,081 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1288 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,953 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 2429 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,052 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,159 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1273 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,646 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1751 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,379 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 2005 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,869 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,941 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,651 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1333 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,117 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1437 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,041 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1608 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,475 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder Large duplicate set. size = 1231 INFO 2026-06-08 09:00:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,516 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1227 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,632 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 2270 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,717 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,228 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,888 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1899 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,908 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1046 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,457 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1408 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,417 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 2049 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,369 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,273 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,179 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1218 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,499 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1077 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,948 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,656 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1678 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,967 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 2244 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,421 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,121 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1324 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,016 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1197 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,257 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder Large duplicate set. size = 1348 INFO 2026-06-08 09:01:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,713 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1288 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,288 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1417 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,837 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,545 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 2212 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,572 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,939 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,939 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1561 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,382 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,557 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,261 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1225 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,216 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1181 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,505 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 2475 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,483 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,166 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1500 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,578 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1649 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,859 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,001 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,376 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1135 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,615 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1544 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,258 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1469 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,731 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1372 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,445 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1062 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,419 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1200 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,218 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder Large duplicate set. size = 1414 INFO 2026-06-08 09:01:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,998 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,941 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 2281 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,278 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1089 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1266 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,046 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1644 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,664 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1075 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,308 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1297 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,513 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1144 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,960 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,788 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1237 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,573 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1507 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 2055 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,005 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,149 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1755 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,281 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1820 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,589 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder Large duplicate set. size = 1092 INFO 2026-06-08 09:01:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,294 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1379 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,654 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1091 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,645 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,039 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 2160 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,396 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,020 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1024 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,642 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1723 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,483 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1613 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,292 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1226 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,941 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1543 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,383 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1688 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,482 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1918 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,554 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 1307 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,317 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 2262 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,529 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,985 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder Large duplicate set. size = 2024 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,840 INFO 2026-06-08 09:01:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,880 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1189 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,843 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1059 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,723 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1664 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1362 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,675 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1282 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,023 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1197 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,710 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1374 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,280 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1510 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,410 INFO 2026-06-08 09:01:04 OpticalDuplicateFinder Large duplicate set. size = 1459 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,692 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder Large duplicate set. size = 1225 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,947 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,002 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,064 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder Large duplicate set. size = 1197 INFO 2026-06-08 09:01:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,252 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1290 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,213 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1239 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,751 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1161 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,736 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,226 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1075 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,601 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1300 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,340 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 2083 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,667 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,330 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 09:01:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,005 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1269 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,787 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 2177 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,250 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,430 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1361 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,976 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 2870 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,416 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,620 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1253 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,718 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1501 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,208 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1150 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,474 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1365 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,372 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:01:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,485 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1480 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,085 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1148 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,135 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,537 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1205 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,855 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1202 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,199 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1346 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,288 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,427 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,355 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1487 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,081 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 2015 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,647 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,871 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1583 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,839 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1359 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,485 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,241 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1954 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,172 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 2220 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,986 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,791 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 2342 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,111 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,296 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,723 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1491 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,803 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 2851 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,909 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,676 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1570 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,550 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1255 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,678 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,683 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,634 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1002 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,807 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1216 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,288 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1104 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,719 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1099 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,885 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,762 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1420 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,253 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder Large duplicate set. size = 1112 INFO 2026-06-08 09:01:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,227 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,605 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1770 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,286 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1411 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,948 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1211 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,480 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,792 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1212 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,276 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,806 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1471 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,046 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1345 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,375 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1682 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,437 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 3209 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,554 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,640 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,044 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,812 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 5594 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,367 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,697 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,175 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,719 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,540 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1625 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,741 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1271 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,622 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1608 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,604 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,466 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1605 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,164 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,886 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 2260 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,586 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,496 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder Large duplicate set. size = 2075 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,940 INFO 2026-06-08 09:01:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,943 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 2382 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,964 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,218 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1279 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,811 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,963 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1310 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,831 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1200 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,959 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1382 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,114 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1017 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,510 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1056 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,313 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1254 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,317 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1950 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,828 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1449 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,735 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 2060 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,634 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,944 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1261 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,887 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1051 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,350 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,957 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1099 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,146 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1339 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,492 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 2573 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,902 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,879 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1805 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,750 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1096 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,502 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1378 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,734 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1752 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,185 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 1807 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,867 INFO 2026-06-08 09:01:10 OpticalDuplicateFinder Large duplicate set. size = 2326 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,309 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,013 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1217 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,937 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,893 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 2144 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,835 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,186 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,612 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 3662 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,201 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,632 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,216 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1029 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1694 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,242 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1515 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,130 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1617 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,787 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,742 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1425 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,430 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,662 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1342 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,924 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1460 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,847 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1602 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,403 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder Large duplicate set. size = 1160 INFO 2026-06-08 09:01:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,299 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1240 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,967 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,470 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,097 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 2878 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,014 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,294 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1462 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,825 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1434 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,778 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1058 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,967 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,909 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 2305 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,640 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,035 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,682 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1298 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,732 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,277 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1075 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,460 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:01:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,591 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1026 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,912 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1215 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,380 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,757 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,731 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1207 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,490 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,056 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1323 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,444 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1359 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,698 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 2596 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,226 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,013 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1206 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,492 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:01:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,907 INFO 2026-06-08 09:01:14 OpticalDuplicateFinder Large duplicate set. size = 1233 INFO 2026-06-08 09:01:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,356 INFO 2026-06-08 09:01:14 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:01:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,655 INFO 2026-06-08 09:01:43 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:01:43 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:03:11 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:03:22 MarkDuplicates After generateDuplicateIndexes freeMemory: 203822360; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:03:22 MarkDuplicates Marking 411463241 records as duplicates. INFO 2026-06-08 09:03:22 MarkDuplicates Found 7799714 optical duplicate clusters. INFO 2026-06-08 09:03:22 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:03:47 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:24s. Time for last 10,000,000: 24s. Last read position: chr1:26,697,471 INFO 2026-06-08 09:04:11 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:49s. Time for last 10,000,000: 24s. Last read position: chr1:86,868,068 INFO 2026-06-08 09:04:35 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:01:13s. Time for last 10,000,000: 24s. Last read position: chr1:154,597,962 INFO 2026-06-08 09:05:00 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:37s. Time for last 10,000,000: 24s. Last read position: chr1:204,618,646 INFO 2026-06-08 09:05:25 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:02:03s. Time for last 10,000,000: 25s. Last read position: chr2:32,916,264 INFO 2026-06-08 09:05:50 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:02:28s. Time for last 10,000,000: 24s. Last read position: chr2:101,005,963 INFO 2026-06-08 09:06:15 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:52s. Time for last 10,000,000: 24s. Last read position: chr2:188,997,208 INFO 2026-06-08 09:06:45 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:03:23s. Time for last 10,000,000: 30s. Last read position: chr2:215,397,695 INFO 2026-06-08 09:07:17 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:03:54s. Time for last 10,000,000: 31s. Last read position: chr2:241,266,799 INFO 2026-06-08 09:07:43 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:04:21s. Time for last 10,000,000: 26s. Last read position: chr3:52,844,820 INFO 2026-06-08 09:08:10 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:04:47s. Time for last 10,000,000: 26s. Last read position: chr3:179,576,897 INFO 2026-06-08 09:08:41 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:05:19s. Time for last 10,000,000: 31s. Last read position: chr4:76,779,084 INFO 2026-06-08 09:09:10 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:05:47s. Time for last 10,000,000: 28s. Last read position: chr5:52,800,695 INFO 2026-06-08 09:09:34 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:06:11s. Time for last 10,000,000: 23s. Last read position: chr5:150,126,600 INFO 2026-06-08 09:09:57 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:06:35s. Time for last 10,000,000: 23s. Last read position: chr6:24,278,051 INFO 2026-06-08 09:10:23 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:07:00s. Time for last 10,000,000: 25s. Last read position: chr6:53,005,167 INFO 2026-06-08 09:10:47 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 24s. Last read position: chr6:163,478,800 INFO 2026-06-08 09:11:13 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:07:50s. Time for last 10,000,000: 25s. Last read position: chr7:56,081,102 INFO 2026-06-08 09:11:38 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:08:16s. Time for last 10,000,000: 25s. Last read position: chr7:100,352,393 INFO 2026-06-08 09:12:24 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:09:01s. Time for last 10,000,000: 45s. Last read position: chr7:151,066,666 INFO 2026-06-08 09:12:47 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:09:25s. Time for last 10,000,000: 23s. Last read position: chr8:100,924,029 INFO 2026-06-08 09:13:11 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:09:48s. Time for last 10,000,000: 23s. Last read position: chr8:144,790,369 INFO 2026-06-08 09:13:34 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:10:12s. Time for last 10,000,000: 23s. Last read position: chr9:120,439,637 INFO 2026-06-08 09:13:58 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 23s. Last read position: chr10:356,459 INFO 2026-06-08 09:14:35 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:11:13s. Time for last 10,000,000: 37s. Last read position: chr10:88,941,350 INFO 2026-06-08 09:15:01 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 25s. Last read position: chr11:2,572,952 INFO 2026-06-08 09:15:24 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:12:02s. Time for last 10,000,000: 23s. Last read position: chr11:62,595,005 INFO 2026-06-08 09:15:48 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 23s. Last read position: chr11:94,188,538 INFO 2026-06-08 09:16:12 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:12:49s. Time for last 10,000,000: 23s. Last read position: chr12:9,695,975 INFO 2026-06-08 09:16:36 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:13:14s. Time for last 10,000,000: 24s. Last read position: chr12:57,096,902 INFO 2026-06-08 09:17:00 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:13:38s. Time for last 10,000,000: 23s. Last read position: chr12:121,817,497 INFO 2026-06-08 09:17:23 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:14:01s. Time for last 10,000,000: 23s. Last read position: chr13:110,506,509 INFO 2026-06-08 09:17:52 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:14:30s. Time for last 10,000,000: 28s. Last read position: chr14:100,123,561 INFO 2026-06-08 09:18:15 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 23s. Last read position: chr15:45,107,394 INFO 2026-06-08 09:18:38 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:15:16s. Time for last 10,000,000: 22s. Last read position: chr15:101,973,420 INFO 2026-06-08 09:19:03 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 24s. Last read position: chr16:18,389,823 INFO 2026-06-08 09:19:28 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:16:05s. Time for last 10,000,000: 24s. Last read position: chr16:55,498,298 INFO 2026-06-08 09:19:58 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:16:36s. Time for last 10,000,000: 30s. Last read position: chr17:7,240,853 INFO 2026-06-08 09:20:25 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:17:02s. Time for last 10,000,000: 26s. Last read position: chr17:42,719,173 INFO 2026-06-08 09:20:50 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:17:28s. Time for last 10,000,000: 25s. Last read position: chr17:50,188,538 INFO 2026-06-08 09:21:15 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:17:53s. Time for last 10,000,000: 25s. Last read position: chr17:50,191,787 INFO 2026-06-08 09:21:39 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:18:17s. Time for last 10,000,000: 24s. Last read position: chr17:50,195,563 INFO 2026-06-08 09:22:04 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:18:41s. Time for last 10,000,000: 24s. Last read position: chr17:50,199,771 INFO 2026-06-08 09:22:26 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:19:04s. Time for last 10,000,000: 22s. Last read position: chr17:82,237,447 INFO 2026-06-08 09:22:49 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:19:27s. Time for last 10,000,000: 23s. Last read position: chr19:6,707,161 INFO 2026-06-08 09:23:12 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:19:50s. Time for last 10,000,000: 22s. Last read position: chr19:35,721,018 INFO 2026-06-08 09:23:36 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:20:14s. Time for last 10,000,000: 24s. Last read position: chr19:49,007,347 INFO 2026-06-08 09:23:59 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:20:36s. Time for last 10,000,000: 22s. Last read position: chr20:35,280,758 INFO 2026-06-08 09:24:20 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:20:58s. Time for last 10,000,000: 21s. Last read position: chr21:33,554,297 INFO 2026-06-08 09:24:42 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:21:19s. Time for last 10,000,000: 21s. Last read position: chr22:35,386,788 INFO 2026-06-08 09:25:02 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:21:40s. Time for last 10,000,000: 20s. Last read position: chrX:41,198,683 INFO 2026-06-08 09:25:23 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:22:01s. Time for last 10,000,000: 20s. Last read position: chrX:154,379,387 INFO 2026-06-08 09:25:37 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:25:37 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:25:37 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:25:37 MarkDuplicates Before output close freeMemory: 203808872; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:25:37 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:25:37 MarkDuplicates After output close freeMemory: 104033976; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:25:37 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 55.49 minutes. Runtime.totalMemory()=134217728 Tool returned: 0 ls: *cram: No such file or directory ls: *.crai: No such file or directory