[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	360374796
Known Splicing Events:	357057878
Partial Novel Splicing Events:	1795710
Novel Splicing Events:	1368963
Filtered Splicing Events:	152245

Total splicing  Junctions:	406859
Known Splicing Junctions:	241244
Partial Novel Splicing Junctions:	89416
Novel Splicing Junctions:	76199

===================================================================
Create BED file ...
Create Interact file ...