Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/0d7fe3e1ea9280d733836310fd53d1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/5913336b52ad035c7da56b0c83119e/659_bNS-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/007ba06bbd404caac7340240fb313c/659_bNS-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/0d7fe3e1ea9280d733836310fd53d1/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 360374796
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	360374796
Known Splicing Events:	357057878
Partial Novel Splicing Events:	1795710
Novel Splicing Events:	1368963
Filtered Splicing Events:	152245

Total splicing  Junctions:	406859
Known Splicing Junctions:	241244
Partial Novel Splicing Junctions:	89416
Novel Splicing Junctions:	76199

===================================================================
Create BED file ...
Create Interact file ...