Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/b1f6eb7600376a02ca47bc17a179e7/tih_rna_sample_00161_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/c4d355e90ce06acc9bc53d3e02d6e3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/c4d355e90ce06acc9bc53d3e02d6e3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/1e98de3e6f6d26b35637a908cd38cf/tih_rna_sample_00161_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory