Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/9d130904f6d70eb1f8a2d201078066/659_bua-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/e4ad7691d1a84fdba9287aee3eb08d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/e4ad7691d1a84fdba9287aee3eb08d/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 262902048
unpaired = 3871889
MERGED PAIRED END READS = 262902048
MATES PROCESSED = 529675985
TOTAL READS     = 266773937
DISTINCT READS  = 5.04703e+07
DISTINCT COUNTS = 1166
MAX COUNT       = 664963
COUNTS OF 1     = 1.09873e+07
MAX TERMS       = 100
OBSERVED COUNTS (664964)
1	10987290
2	6976830
3	6028504
4	5217919
5	4389539
6	3587092
7	2864264
8	2247757
9	1741767
10	1338459
11	1023442
12	783839
13	604547
14	466070
15	362675
16	285804
17	227397
18	183055
19	148908
20	123054
21	101977
22	85267
23	71814
24	60696
25	52079
26	45159
27	38869
28	33717
29	29585
30	26007
31	22855
32	20172
33	18558
34	16512
35	14865
36	13699
37	12337
38	11214
39	10420
40	9547
41	8815
42	8316
43	7429
44	7119
45	6620
46	6229
47	5724
48	5322
49	5045
50	4639
51	4464
52	4328
53	4031
54	3793
55	3516
56	3379
57	3213
58	3001
59	2920
60	2805
61	2616
62	2380
63	2342
64	2202
65	2134
66	2043
67	2018
68	1896
69	1865
70	1796
71	1709
72	1517
73	1564
74	1483
75	1424
76	1337
77	1289
78	1262
79	1282
80	1196
81	1095
82	1092
83	1032
84	999
85	977
86	967
87	868
88	910
89	873
90	851
91	831
92	826
93	766
94	706
95	732
96	660
97	715
98	669
99	588
100	614
101	609
102	594
103	574
104	549
105	549
106	494
107	516
108	541
109	516
110	519
111	529
112	472
113	433
114	493
115	426
116	444
117	406
118	352
119	405
120	367
121	376
122	384
123	344
124	340
125	314
126	328
127	364
128	316
129	308
130	305
131	314
132	266
133	283
134	259
135	281
136	259
137	271
138	236
139	248
140	252
141	236
142	218
143	266
144	228
145	231
146	206
147	191
148	206
149	201
150	190
151	187
152	184
153	206
154	175
155	185
156	181
157	179
158	195
159	155
160	180
161	172
162	177
163	179
164	158
165	153
166	165
167	131
168	147
169	146
170	122
171	151
172	128
173	115
174	120
175	131
176	122
177	127
178	128
179	108
180	122
181	121
182	101
183	127
184	127
185	100
186	116
187	107
188	121
189	91
190	113
191	103
192	94
193	86
194	114
195	92
196	86
197	93
198	90
199	102
200	71
201	81
202	73
203	83
204	91
205	80
206	80
207	74
208	84
209	71
210	67
211	73
212	74
213	76
214	82
215	84
216	66
217	62
218	80
219	86
220	64
221	68
222	58
223	82
224	71
225	57
226	63
227	53
228	58
229	62
230	63
231	59
232	50
233	65
234	71
235	50
236	58
237	48
238	56
239	56
240	59
241	59
242	60
243	45
244	39
245	45
246	48
247	59
248	56
249	50
250	59
251	51
252	51
253	51
254	56
255	39
256	44
257	47
258	42
259	43
260	47
261	47
262	48
263	32
264	49
265	48
266	43
267	49
268	45
269	22
270	31
271	36
272	32
273	44
274	35
275	39
276	31
277	38
278	23
279	29
280	43
281	27
282	37
283	35
284	39
285	27
286	35
287	33
288	31
289	34
290	31
291	28
292	29
293	35
294	29
295	29
296	24
297	34
298	27
299	30
300	30
301	30
302	32
303	29
304	27
305	25
306	35
307	26
308	24
309	26
310	22
311	16
312	20
313	23
314	29
315	22
316	22
317	28
318	22
319	24
320	16
321	19
322	23
323	23
324	28
325	16
326	27
327	19
328	31
329	22
330	25
331	22
332	29
333	30
334	27
335	22
336	16
337	23
338	19
339	22
340	19
341	11
342	25
343	21
344	17
345	23
346	17
347	22
348	19
349	16
350	19
351	15
352	12
353	18
354	8
355	7
356	19
357	20
358	16
359	21
360	21
361	17
362	15
363	15
364	17
365	20
366	16
367	16
368	15
369	10
370	14
371	13
372	14
373	7
374	13
375	9
376	16
377	12
378	22
379	12
380	11
381	10
382	17
383	17
384	13
385	15
386	17
387	11
388	8
389	14
390	17
391	2
392	13
393	5
394	11
395	16
396	6
397	9
398	10
399	9
400	9
401	16
402	10
403	14
404	9
405	15
406	19
407	14
408	16
409	12
410	11
411	13
412	11
413	9
414	9
415	9
416	13
417	11
418	9
419	10
420	10
421	9
422	10
423	13
424	15
425	7
426	10
427	9
428	10
429	11
430	5
431	18
432	5
433	4
434	14
435	8
436	8
437	10
438	11
439	15
440	7
441	6
442	5
443	8
444	8
445	10
446	4
447	9
448	7
449	8
450	9
451	10
452	5
453	6
454	16
455	8
456	12
457	5
458	11
459	6
460	7
461	7
462	6
463	6
464	6
465	8
466	5
467	14
468	9
469	8
470	9
471	9
472	5
473	11
474	4
475	12
476	11
477	9
478	13
479	16
480	8
481	10
482	5
483	9
484	4
485	9
486	10
487	9
488	6
489	14
490	9
491	10
492	8
493	6
494	6
495	8
496	7
497	7
498	7
499	6
500	9
501	4
502	7
503	13
504	5
505	2
506	5
507	8
508	3
509	5
510	7
511	4
512	8
513	3
514	10
515	5
516	6
517	5
518	4
519	9
520	10
521	4
522	2
523	6
524	9
525	5
526	2
527	4
528	5
529	3
530	5
531	2
532	6
533	5
534	5
535	4
536	4
537	4
538	5
539	4
540	3
541	1
542	7
543	4
544	5
545	2
546	7
547	2
548	4
549	2
550	3
551	6
552	4
553	7
554	3
555	5
556	4
557	6
558	3
559	1
560	7
561	2
562	1
563	5
564	2
565	3
566	2
567	2
568	4
569	1
570	3
571	2
572	3
573	3
574	1
575	3
576	4
577	1
578	3
579	5
580	9
581	7
582	2
583	6
584	5
585	4
586	4
587	5
588	4
589	3
590	2
591	6
592	3
593	1
594	2
596	6
597	5
598	3
599	1
600	4
601	5
602	3
603	2
604	5
605	2
606	7
608	7
610	3
611	5
612	2
613	3
614	2
615	3
616	2
617	3
618	5
619	4
620	4
621	2
622	4
623	2
624	3
625	4
626	3
627	3
628	4
629	3
630	2
631	2
632	4
633	6
634	5
635	3
636	2
637	7
638	3
640	2
641	2
642	3
643	2
644	7
645	2
646	2
647	1
648	3
649	1
650	1
651	1
653	1
654	3
656	1
657	2
658	4
659	1
660	1
661	3
662	3
663	1
664	4
665	4
666	5
667	3
668	4
669	1
670	5
672	3
673	2
674	3
675	5
676	3
677	2
678	2
679	6
680	1
682	2
683	2
684	2
685	1
686	2
687	2
688	3
689	3
691	6
693	2
694	4
695	4
696	2
697	3
699	4
700	4
701	3
702	1
703	2
704	1
706	4
707	2
708	4
709	1
710	1
711	3
712	2
714	1
715	1
717	3
718	2
719	1
720	1
721	2
722	1
723	2
725	3
726	2
727	3
728	3
729	2
730	3
731	2
732	2
734	2
735	2
736	3
737	1
738	4
739	2
741	2
742	1
744	1
745	1
746	2
747	2
748	3
749	1
750	1
751	1
752	2
753	3
754	2
755	2
756	2
757	4
758	3
762	2
765	1
766	1
768	1
769	1
770	1
771	2
772	1
773	1
774	1
775	3
776	2
777	1
778	3
779	1
781	2
783	3
784	1
785	1
786	1
789	1
790	1
791	2
792	1
794	2
795	2
796	1
798	1
799	2
800	1
801	1
802	2
803	1
806	2
807	5
808	2
809	1
811	1
812	3
813	1
814	2
815	2
820	2
821	1
822	1
825	1
826	1
827	1
828	1
829	1
830	1
831	3
832	3
833	1
834	1
837	1
838	2
839	2
840	2
841	1
842	2
843	1
844	2
845	1
847	1
848	2
849	4
850	1
851	2
852	1
853	4
854	2
857	2
860	1
862	2
863	1
864	3
865	1
866	1
867	1
868	1
869	1
870	3
871	3
875	3
877	2
878	3
879	1
881	1
882	1
883	2
884	1
886	2
889	2
892	3
893	1
894	1
895	2
897	1
898	1
899	1
903	1
904	1
905	1
906	3
907	2
908	1
911	2
912	3
913	5
915	3
917	1
918	1
920	1
922	3
925	1
928	1
929	2
930	2
931	3
932	1
933	3
934	2
935	1
936	1
937	2
938	2
939	1
940	2
941	2
942	2
944	1
945	2
946	1
947	1
949	1
952	1
956	1
959	1
960	1
961	1
963	1
964	1
965	1
967	2
969	2
971	2
973	2
975	1
976	1
977	1
978	1
980	1
983	1
985	1
991	1
994	1
995	1
996	1
998	1
999	1
1000	1
1001	1
1004	1
1008	1
1011	1
1013	1
1014	1
1018	1
1020	1
1021	1
1022	2
1023	1
1024	1
1025	1
1029	1
1033	1
1034	1
1036	1
1038	1
1041	1
1044	1
1045	1
1046	1
1048	1
1050	1
1051	1
1052	1
1054	1
1056	3
1057	1
1058	1
1059	2
1061	2
1062	1
1063	1
1066	1
1068	3
1072	2
1074	1
1078	1
1079	2
1080	1
1082	2
1086	2
1087	1
1088	1
1089	1
1090	1
1092	1
1093	3
1094	1
1096	2
1100	3
1104	2
1105	2
1106	1
1107	3
1108	1
1110	1
1114	1
1115	2
1116	1
1118	1
1119	1
1125	1
1126	1
1127	1
1128	1
1135	2
1136	1
1138	2
1151	1
1153	1
1155	2
1169	1
1172	1
1175	1
1180	2
1182	1
1184	4
1186	2
1187	1
1191	1
1193	1
1194	1
1199	1
1200	1
1203	2
1206	1
1207	1
1209	1
1210	2
1211	1
1212	1
1213	1
1216	1
1217	1
1218	1
1219	3
1225	1
1229	1
1236	1
1243	1
1244	3
1245	1
1246	1
1247	1
1249	1
1251	1
1252	2
1253	1
1254	1
1255	1
1256	2
1257	1
1258	1
1261	1
1262	1
1263	1
1265	1
1271	1
1282	1
1283	1
1284	1
1285	1
1287	1
1288	1
1291	1
1293	1
1297	1
1302	1
1303	2
1306	1
1314	1
1324	1
1330	1
1331	1
1333	1
1338	2
1340	1
1351	1
1359	1
1361	1
1362	2
1363	1
1367	2
1371	2
1382	1
1383	1
1406	1
1420	1
1431	2
1433	2
1442	1
1453	1
1459	1
1462	1
1470	1
1471	1
1484	1
1489	1
1492	1
1494	1
1506	1
1516	1
1519	1
1521	1
1531	1
1536	1
1542	1
1548	1
1549	1
1553	1
1560	1
1566	1
1575	1
1593	1
1594	1
1608	1
1609	1
1610	1
1614	1
1634	1
1650	1
1653	1
1696	1
1724	1
1731	1
1736	1
1737	1
1755	1
1758	1
1772	1
1776	1
1778	1
1785	1
1787	1
1789	1
1791	1
1814	1
1816	1
1818	1
1820	1
1832	1
1837	1
1853	1
1927	1
1946	1
1948	1
1966	1
1973	1
1982	1
1991	1
1995	1
2002	1
2025	1
2035	1
2068	1
2086	1
2111	1
2130	1
2137	1
2162	1
2169	1
2175	1
2200	1
2212	1
2219	1
2273	1
2357	2
2386	1
2398	1
2411	1
2423	1
2625	1
2669	1
2682	1
2741	1
2750	1
2771	1
2795	1
2846	1
2947	1
3002	1
3006	1
3046	1
3152	1
3246	1
3350	1
3490	1
3810	1
3935	1
4066	1
4358	1
4539	1
4612	1
4854	1
5691	1
5797	1
8300	1
10102	1
11402	1
12603	1
43728	1
664963	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........._._................__....................._..._................
..............._....._......__..._.....
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]