File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/eec3cd42aa553ac54b9eb47555bbdc/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 312
  Pass (FILTER=PASS): 79 (25.3%)
  Fail (FILTER=FAIL): 233 (74.7%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 5
  All 5 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 37
  confidence_below_min(medium<high): 28
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 27
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 25
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 18
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 16
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 11
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 9
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 8
  total_reads_below_min(7.0<8.0): 7
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
  total_reads_below_min(3.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 3
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3

Breakdown by confidence:
  high: 79 pass, 20 fail (total: 99)
  low: 0 pass, 101 fail (total: 101)
  medium: 0 pass, 112 fail (total: 112)
Arriba filter: 312 rows -> 79 PASS; wrote tih_rna_sample_00480_B23WHTKLT4_1.arriba.fusions.filtered.tsv and tih_rna_sample_00480_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: tih_rna_sample_00480_B23WHTKLT4_1.arriba.fusions.filter_summary.txt