Done.
-parsing GTF file: /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.gtf
* Running CMD: /usr/local/bin/STAR --runThreadN 8 --genomeDir /tmp/nxf.o4DreIYIT5/ctat_genome_lib_build_dir/ref_genome.fa.star.idx --outSAMtype BAM SortedByCoordinate --twopassMode None --alignSJDBoverhangMin 10 --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705 --alignInsertionFlush Right --alignMatesGapMax 100000 --alignIntronMax 100000 --outSAMattributes All --readFilesIn /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2_1.fastp.fastq.gz /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2_2.fastp.fastq.gz --genomeFastaFiles /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.fa --outSAMfilter KeepAllAddedReferences --sjdbGTFfile /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.gtf --alignSJstitchMismatchNmax 5 -1 5 5 --scoreGapNoncan -6 --readFilesCommand 'gunzip -c'
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00163_B23WHTKLT4_2.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00163_B23WHTKLT4_2.star.sortedByCoord.out.bam
11:31:11 : INFO : Done.
-parsing GTF file: /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.gtf
-parsing /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.star.cSorted.dupsMarked.bam
[10000]
[20000]
[30000]
[40000]
[50000]
[60000]
[70000]
[80000]
[90000]
[100000]
[110000]
[120000]
[130000]
[140000]
[150000]
[160000]
[170000]
[180000]
[190000]
[200000]
[210000]
[220000]
[230000]
[240000]
[250000]
[260000]
[270000]
[280000]
[290000]
[300000]
[310000]
[320000]
[330000]
[340000]
[350000]
[360000]
[370000]
[380000]
[390000]
[400000]
[410000]
[420000]
[430000]
[440000]
[450000]
[460000]
[470000]
[480000]
[490000]
[500000]
[510000]
[520000]
[530000]
[540000]
[550000]
[560000]
[570000]
[580000]
[590000]
[600000]
[610000]
[620000]
[630000]
[640000]
[650000]
[660000]
[670000]
[680000]
[690000]
[700000]
[710000]
[720000]
[730000]
[740000]
[750000]
[760000]
[770000]
[780000]
[790000]
[800000]
[810000]
[820000]
[830000]
[840000]
[850000]
[860000]
[870000]
[880000]
[890000]
[900000]
[910000]
[920000]
[930000]
[940000]
[950000]
[960000]
[970000]
[980000]
[990000]
[1000000]
[1010000]
[1020000]
[1030000]
[1040000]
[1050000]
[1060000]
[1070000]
[1080000]
[1090000]
[1100000]
[1110000]
[1120000]
[1130000]
[1140000]
[1150000]
[1160000]
[1170000]
[1180000]
[1190000]
[1200000]
[1210000]
[1220000]
[1230000]
[1240000]
[1250000]
[1260000]
[1270000]
[1280000]
[1290000]
[1300000]
[1310000] -done parsing /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.star.cSorted.dupsMarked.bam. Extracting junction info.
junction read elimination tally: $VAR1 = {
'excessive soft clipping' => 10276,
'low complexity anchor region' => 21,
'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 120,
' ** passed ** ' => 5058,
'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 42,
'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 46,
'num genes matched < 2' => 53,
'small anchor length' => 1,
'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 3,
'per_id < 96' => 6234,
'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 102,
'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 12,
'num_hits: 6 != num_counted_on_fusion_contigs 2 ' => 4,
'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 9,
'seq-similar region overlap' => 364
};
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.star.cSorted.dupsMarked.bam.fusion_spanning_info.
- counting read alignments among fusion contigs.
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000] -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1
[1000]
[2000] -fusion SPANNING read extraction for scaff: KLRC4--KLRK1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000] -fusion SPANNING read extraction for scaff: LINC01674--POTED
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000] -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000]
[167000]
[168000]
[169000]
[170000]
[171000]
[172000]
[173000]
[174000]
[175000]
[176000]
[177000]
[178000]
[179000]
[180000]
[181000]
[182000]
[183000]
[184000]
[185000]
[186000]
[187000]
[188000]
[189000]
[190000]
[191000]
[192000]
[193000]
[194000]
[195000]
[196000]
[197000]
[198000]
[199000]
[200000]
[201000]
[202000]
[203000]
[204000]
[205000]
[206000]
[207000]
[208000]
[209000]
[210000]
[211000]
[212000]
[213000]
[214000]
[215000]
[216000]
[217000]
[218000]
[219000]
[220000]
[221000]
[222000]
[223000]
[224000]
[225000]
[226000]
[227000]
[228000]
[229000]
[230000]
[231000]
[232000]
[233000]
[234000]
[235000]
[236000]
[237000]
[238000]
[239000]
[240000]
[241000]
[242000]
[243000]
[244000]
[245000]
[246000]
[247000]
[248000]
[249000]
[250000]
[251000]
[252000]
[253000]
[254000]
[255000]
[256000]
[257000]
[258000]
[259000]
[260000]
[261000]
[262000]
[263000]
[264000]
[265000]
[266000]
[267000]
[268000]
[269000]
[270000]
[271000]
[272000]
[273000]
[274000]
[275000]
[276000]
[277000]
[278000]
[279000]
[280000]
[281000]
[282000]
[283000]
[284000]
[285000]
[286000]
[287000]
[288000]
[289000]
[290000]
[291000]
[292000]
[293000]
[294000]
[295000]
[296000]
[297000]
[298000]
[299000]
[300000]
[301000]
[302000]
[303000]
[304000]
[305000]
[306000]
[307000]
[308000]
[309000]
[310000]
[311000]
[312000]
[313000]
[314000]
[315000]
[316000]
[317000]
[318000]
[319000]
[320000]
[321000]
[322000]
[323000]
[324000]
[325000]
[326000]
[327000]
[328000]
[329000]
[330000]
[331000]
[332000]
[333000]
[334000]
[335000]
[336000]
[337000]
[338000]
[339000]
[340000]
[341000]
[342000]
[343000]
[344000]
[345000]
[346000]
[347000]
[348000]
[349000]
[350000]
[351000]
[352000]
[353000]
[354000]
[355000]
[356000]
[357000] -fusion SPANNING read extraction for scaff: PIP4K2B--CDK12
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000] -fusion SPANNING read extraction for scaff: RAB31--CBLB
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000] -fusion SPANNING read extraction for scaff: RAB31--AC131237.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000] -fusion SPANNING read extraction for scaff: RUNX1--LINC01674
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000]
[134000]
[135000]
[136000]
[137000]
[138000]
[139000]
[140000]
[141000]
[142000]
[143000]
[144000]
[145000]
[146000]
[147000]
[148000]
[149000]
[150000]
[151000]
[152000]
[153000]
[154000]
[155000]
[156000]
[157000]
[158000]
[159000]
[160000]
[161000]
[162000]
[163000]
[164000]
[165000]
[166000] -fusion SPANNING read extraction for scaff: RUNX1--POTED
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000]
[110000]
[111000]
[112000]
[113000]
[114000]
[115000]
[116000]
[117000]
[118000]
[119000]
[120000]
[121000]
[122000]
[123000]
[124000]
[125000]
[126000]
[127000]
[128000]
[129000]
[130000]
[131000]
[132000]
[133000] -fusion SPANNING read extraction for scaff: RUNX1--GTF2IP2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000]
[98000]
[99000]
[100000]
[101000]
[102000]
[103000]
[104000]
[105000]
[106000]
[107000]
[108000]
[109000] -fusion SPANNING read extraction for scaff: SCARF2--EHMT1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000]
[39000]
[40000]
[41000]
[42000]
[43000]
[44000]
[45000]
[46000]
[47000]
[48000]
[49000]
[50000]
[51000]
[52000]
[53000]
[54000]
[55000]
[56000]
[57000]
[58000]
[59000]
[60000]
[61000]
[62000]
[63000]
[64000]
[65000]
[66000]
[67000]
[68000]
[69000]
[70000]
[71000]
[72000]
[73000]
[74000]
[75000]
[76000]
[77000]
[78000]
[79000]
[80000]
[81000]
[82000]
[83000]
[84000]
[85000]
[86000]
[87000]
[88000]
[89000]
[90000]
[91000]
[92000]
[93000]
[94000]
[95000]
[96000]
[97000] -fusion SPANNING read extraction for scaff: STX16--NPEPL1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000] -fusion SPANNING read extraction for scaff: TLK2--AC240565.1
[1000]
[2000]
[3000]
[4000]
[5000] -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000]
[24000]
[25000]
[26000]
[27000]
[28000]
[29000]
[30000]
[31000]
[32000]
[33000]
[34000]
[35000]
[36000]
[37000]
[38000] -fusion SPANNING read extraction for scaff: TPD52L1--HDDC2
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000] -fusion SPANNING read extraction for scaff: TVP23C--CDRT4
[1000]
[2000]
[3000]
[4000]
[5000]
[6000]
[7000]
[8000]
[9000]
[10000]
[11000]
[12000]
[13000]
[14000]
[15000]
[16000]
[17000]
[18000]
[19000]
[20000]
[21000]
[22000]
[23000] -fusion SPANNING read extraction for scaff: ZNF44--AC024563.1
-filtered reads reasons: $VAR1 = {
'seq similar region alignment' => 15640,
'lacks exon overlap' => 11170
};
EM: Starting log likelihood: -7172.498939
EM: Round [1] log likelihood: -7167.511972
EM: Round [2] log likelihood: -7167.204556
EM: Round [3] log likelihood: -7166.934925
EM: Round [4] log likelihood: -7166.694895
EM: Round [5] log likelihood: -7166.480515
EM: Round [6] log likelihood: -7166.288491
EM: Round [7] log likelihood: -7166.116051
EM: Round [8] log likelihood: -7165.960843
EM: Round [9] log likelihood: -7165.820854
EM: Round [10] log likelihood: -7165.694356
EM: Round [11] log likelihood: -7165.579849
EM: Round [12] log likelihood: -7165.476032
EM: Round [13] log likelihood: -7165.381767
EM: Round [14] log likelihood: -7165.296055
EM: Round [15] log likelihood: -7165.218018
EM: Round [16] log likelihood: -7165.146879
EM: Round [17] log likelihood: -7165.081949
EM: Round [18] log likelihood: -7165.022619
EM: Round [19] log likelihood: -7164.968342
EM: Round [20] log likelihood: -7164.918633
EM: Round [21] log likelihood: -7164.873056
EM: Round [22] log likelihood: -7164.831223
EM: Round [23] log likelihood: -7164.792783
EM: Round [24] log likelihood: -7164.757421
EM: Round [25] log likelihood: -7164.724855
EM: Round [26] log likelihood: -7164.694829
EM: Round [27] log likelihood: -7164.667113
EM: Round [28] log likelihood: -7164.641498
EM: Round [29] log likelihood: -7164.617798
EM: Round [30] log likelihood: -7164.595840
EM: Round [31] log likelihood: -7164.575471
EM: Round [32] log likelihood: -7164.556552
EM: Round [33] log likelihood: -7164.538955
EM: Round [34] log likelihood: -7164.522565
EM: Round [35] log likelihood: -7164.507278
EM: Round [36] log likelihood: -7164.492999
EM: Round [37] log likelihood: -7164.479641
EM: Round [38] log likelihood: -7164.467126
EM: Round [39] log likelihood: -7164.455383
EM: Round [40] log likelihood: -7164.444345
EM: Round [41] log likelihood: -7164.433955
EM: Round [42] log likelihood: -7164.424159
EM: Round [43] log likelihood: -7164.414906
EM: Round [44] log likelihood: -7164.406153
EM: Round [45] log likelihood: -7164.397858
EM: Round [46] log likelihood: -7164.389985
EM: Round [47] log likelihood: -7164.382498
EM: Round [48] log likelihood: -7164.375369
EM: Round [49] log likelihood: -7164.368567
EM: Round [50] log likelihood: -7164.362067
EM: Round [51] log likelihood: -7164.355847
EM: Round [52] log likelihood: -7164.349883
EM: Round [53] log likelihood: -7164.344157
EM: Round [54] log likelihood: -7164.338650
EM: Round [55] log likelihood: -7164.333347
EM: Round [56] log likelihood: -7164.328231
EM: Round [57] log likelihood: -7164.323290
EM: Round [58] log likelihood: -7164.318511
EM: Round [59] log likelihood: -7164.313882
EM: Round [60] log likelihood: -7164.309393
EM: Round [61] log likelihood: -7164.305034
EM: Round [62] log likelihood: -7164.300796
EM: Round [63] log likelihood: -7164.296672
EM: Round [64] log likelihood: -7164.292654
EM: Round [65] log likelihood: -7164.288735
EM: Round [66] log likelihood: -7164.284908
EM: Round [67] log likelihood: -7164.281169
EM: Round [68] log likelihood: -7164.277512
EM: Round [69] log likelihood: -7164.273932
EM: Round [70] log likelihood: -7164.270425
EM: Round [71] log likelihood: -7164.266987
EM: Round [72] log likelihood: -7164.263614
EM: Round [73] log likelihood: -7164.260302
EM: Round [74] log likelihood: -7164.257048
EM: Round [75] log likelihood: -7164.253850
EM: Round [76] log likelihood: -7164.250705
EM: Round [77] log likelihood: -7164.247611
EM: Round [78] log likelihood: -7164.244564
EM: Round [79] log likelihood: -7164.241563
EM: Round [80] log likelihood: -7164.238606
EM: Round [81] log likelihood: -7164.235692
EM: Round [82] log likelihood: -7164.232818
EM: Round [83] log likelihood: -7164.229983
EM: Round [84] log likelihood: -7164.227186
EM: Round [85] log likelihood: -7164.224425
EM: Round [86] log likelihood: -7164.221698
EM: Round [87] log likelihood: -7164.219006
EM: Round [88] log likelihood: -7164.216347
EM: Round [89] log likelihood: -7164.213719
EM: Round [90] log likelihood: -7164.211122
EM: Round [91] log likelihood: -7164.208555
EM: Round [92] log likelihood: -7164.206017
EM: Round [93] log likelihood: -7164.203508
EM: Round [94] log likelihood: -7164.201026
EM: Round [95] log likelihood: -7164.198571
EM: Round [96] log likelihood: -7164.196143
EM: Round [97] log likelihood: -7164.193740
EM: Round [98] log likelihood: -7164.191362
EM: Round [99] log likelihood: -7164.189010
EM: Round [100] log likelihood: -7164.186681
EM: Round [101] log likelihood: -7164.184376
EM: Round [102] log likelihood: -7164.182094
EM: Round [103] log likelihood: -7164.179835
EM: Round [104] log likelihood: -7164.177598
EM: Round [105] log likelihood: -7164.175383
EM: Round [106] log likelihood: -7164.173190
EM: Round [107] log likelihood: -7164.171018
EM: Round [108] log likelihood: -7164.168867
EM: Round [109] log likelihood: -7164.166736
EM: Round [110] log likelihood: -7164.164625
EM: Round [111] log likelihood: -7164.162535
EM: Round [112] log likelihood: -7164.160464
EM: Round [113] log likelihood: -7164.158412
EM: Round [114] log likelihood: -7164.156380
EM: Round [115] log likelihood: -7164.154366
EM: Round [116] log likelihood: -7164.152371
EM: Round [117] log likelihood: -7164.150394
EM: Round [118] log likelihood: -7164.148435
EM: Round [119] log likelihood: -7164.146494
EM: Round [120] log likelihood: -7164.144571
EM: Round [121] log likelihood: -7164.142665
EM: Round [122] log likelihood: -7164.140776
EM: Round [123] log likelihood: -7164.138904
EM: Round [124] log likelihood: -7164.137048
EM: Round [125] log likelihood: -7164.135209
EM: Round [126] log likelihood: -7164.133387
EM: Round [127] log likelihood: -7164.131581
EM: Round [128] log likelihood: -7164.129790
EM: Round [129] log likelihood: -7164.128016
EM: Round [130] log likelihood: -7164.126257
EM: Round [131] log likelihood: -7164.124513
EM: Round [132] log likelihood: -7164.122785
EM: Round [133] log likelihood: -7164.121071
EM: Round [134] log likelihood: -7164.119373
EM: Round [135] log likelihood: -7164.117689
EM: Round [136] log likelihood: -7164.116020
EM: Round [137] log likelihood: -7164.114365
EM: Round [138] log likelihood: -7164.112725
EM: Round [139] log likelihood: -7164.111099
EM: Round [140] log likelihood: -7164.109486
EM: Round [141] log likelihood: -7164.107888
EM: Round [142] log likelihood: -7164.106303
EM: Round [143] log likelihood: -7164.104732
EM: Round [144] log likelihood: -7164.103174
EM: Round [145] log likelihood: -7164.101629
EM: Round [146] log likelihood: -7164.100098
EM: Round [147] log likelihood: -7164.098579
EM: Round [148] log likelihood: -7164.097074
EM: Round [149] log likelihood: -7164.095581
EM: Round [150] log likelihood: -7164.094100
EM: Round [151] log likelihood: -7164.092632
EM: Round [152] log likelihood: -7164.091177
EM: Round [153] log likelihood: -7164.089733
EM: Round [154] log likelihood: -7164.088302
EM: Round [155] log likelihood: -7164.086883
EM: Round [156] log likelihood: -7164.085476
EM: Round [157] log likelihood: -7164.084080
EM: Round [158] log likelihood: -7164.082696
EM: Round [159] log likelihood: -7164.081323
EM: Round [160] log likelihood: -7164.079962
EM: Round [161] log likelihood: -7164.078613
EM: Round [162] log likelihood: -7164.077274
EM: Round [163] log likelihood: -7164.075946
EM: Round [164] log likelihood: -7164.074630
EM: Round [165] log likelihood: -7164.073324
EM: Round [166] log likelihood: -7164.072029
EM: Round [167] log likelihood: -7164.070745
EM: Round [168] log likelihood: -7164.069471
EM: Round [169] log likelihood: -7164.068208
EM: Round [170] log likelihood: -7164.066955
EM: Round [171] log likelihood: -7164.065712
EM: Round [172] log likelihood: -7164.064480
EM: Round [173] log likelihood: -7164.063257
EM: Round [174] log likelihood: -7164.062045
EM: Round [175] log likelihood: -7164.060842
EM: Round [176] log likelihood: -7164.059649
EM: Round [177] log likelihood: -7164.058466
EM: Round [178] log likelihood: -7164.057293
EM: Round [179] log likelihood: -7164.056128
EM: Round [180] log likelihood: -7164.054974
EM: Round [181] log likelihood: -7164.053829
EM: Round [182] log likelihood: -7164.052693
EM: Round [183] log likelihood: -7164.051566
EM: Round [184] log likelihood: -7164.050448
EM: Round [185] log likelihood: -7164.049339
EM: Round [186] log likelihood: -7164.048239
EM: Round [187] log likelihood: -7164.047148
EM: Round [188] log likelihood: -7164.046066
EM: Round [189] log likelihood: -7164.044992
EM: Round [190] log likelihood: -7164.043927
EM: Round [191] log likelihood: -7164.042871
EM: Round [192] log likelihood: -7164.041823
EM: Round [193] log likelihood: -7164.040783
EM: Round [194] log likelihood: -7164.039752
EM: Round [195] log likelihood: -7164.038729
EM: Round [196] log likelihood: -7164.037714
EM: Round [197] log likelihood: -7164.036707
EM: Round [198] log likelihood: -7164.035708
EM: Round [199] log likelihood: -7164.034717
EM: Round [200] log likelihood: -7164.033734
EM: Round [201] log likelihood: -7164.032758
EM: Round [202] log likelihood: -7164.031790
EM: Round [203] log likelihood: -7164.030830
EM: Round [204] log likelihood: -7164.029878
EM: Round [205] log likelihood: -7164.028933
EM: Round [206] log likelihood: -7164.027995
EM: Round [207] log likelihood: -7164.027065
EM: Round [208] log likelihood: -7164.026143
EM: Round [209] log likelihood: -7164.025227
EM: Round [210] log likelihood: -7164.024319
EM: Round [211] log likelihood: -7164.023417
EM: Round [212] log likelihood: -7164.022523
EM: Round [213] log likelihood: -7164.021636
EM: Round [214] log likelihood: -7164.020756
EM: Round [215] log likelihood: -7164.019882
EM: Round [216] log likelihood: -7164.019016
EM: Round [217] log likelihood: -7164.018156
EM: Round [218] log likelihood: -7164.017303
EM: Round [219] log likelihood: -7164.016456
EM: Round [220] log likelihood: -7164.015617
EM: Round [221] log likelihood: -7164.014783
EM: Round [222] log likelihood: -7164.013956
EM: Round [223] log likelihood: -7164.013136
EM: Round [224] log likelihood: -7164.012322
EM: Round [225] log likelihood: -7164.011514
EM: Round [226] log likelihood: -7164.010713
EM: Round [227] log likelihood: -7164.009917
EM: Round [228] log likelihood: -7164.009128
EM: Round [229] log likelihood: -7164.008345
EM: Round [230] log likelihood: -7164.007568
EM: Round [231] log likelihood: -7164.006797
EM: Round [232] log likelihood: -7164.006032
EM: Round [233] log likelihood: -7164.005273
EM: Round [234] log likelihood: -7164.004519
EM: Round [235] log likelihood: -7164.003772
EM: Round [236] log likelihood: -7164.003030
EM: Round [237] log likelihood: -7164.002294
EM: Round [238] log likelihood: -7164.001563
EM: Round [239] log likelihood: -7164.000839
EM: Round [240] log likelihood: -7164.000119
EM: Round [241] log likelihood: -7163.999405
EM: Round [242] log likelihood: -7163.998697
EM: Round [243] log likelihood: -7163.997994
EM: Round [244] log likelihood: -7163.997297
EM: Round [245] log likelihood: -7163.996604
EM: Round [246] log likelihood: -7163.995917
EM: Round [247] log likelihood: -7163.995236
EM: Round [248] log likelihood: -7163.994559
EM: Round [249] log likelihood: -7163.993888
EM: Round [250] log likelihood: -7163.993221
EM: Round [251] log likelihood: -7163.992560
EM: Round [252] log likelihood: -7163.991904
EM: Round [253] log likelihood: -7163.991253
EM: Round [254] log likelihood: -7163.990607
EM: Round [255] log likelihood: -7163.989965
EM: Round [256] log likelihood: -7163.989329
EM: Round [257] log likelihood: -7163.988697
EM: Round [258] log likelihood: -7163.988070
EM: Round [259] log likelihood: -7163.987448
EM: Round [260] log likelihood: -7163.986831
EM: Round [261] log likelihood: -7163.986218
EM: Round [262] log likelihood: -7163.985610
EM: Round [263] log likelihood: -7163.985006
EM: Round [264] log likelihood: -7163.984407
EM: Round [265] log likelihood: -7163.983813
EM: Round [266] log likelihood: -7163.983223
EM: Round [267] log likelihood: -7163.982637
EM: Round [268] log likelihood: -7163.982056
EM: Round [269] log likelihood: -7163.981479
EM: Round [270] log likelihood: -7163.980907
EM: Round [271] log likelihood: -7163.980338
EM: Round [272] log likelihood: -7163.979774
EM: Round [273] log likelihood: -7163.979215
EM: Round [274] log likelihood: -7163.978659
EM: Round [275] log likelihood: -7163.978108
EM: Round [276] log likelihood: -7163.977561
EM: Round [277] log likelihood: -7163.977018
EM: Round [278] log likelihood: -7163.976479
EM: Round [279] log likelihood: -7163.975944
EM: Round [280] log likelihood: -7163.975413
EM: Round [281] log likelihood: -7163.974886
EM: Round [282] log likelihood: -7163.974363
EM: Round [283] log likelihood: -7163.973843
EM: Round [284] log likelihood: -7163.973328
EM: Round [285] log likelihood: -7163.972817
EM: Round [286] log likelihood: -7163.972309
EM: Round [287] log likelihood: -7163.971805
EM: Round [288] log likelihood: -7163.971305
EM: Round [289] log likelihood: -7163.970808
EM: Round [290] log likelihood: -7163.970316
EM: Round [291] log likelihood: -7163.969827
EM: Round [292] log likelihood: -7163.969341
EM: Round [293] log likelihood: -7163.968859
EM: Round [294] log likelihood: -7163.968381
EM: Round [295] log likelihood: -7163.967906
EM: Round [296] log likelihood: -7163.967435
EM: Round [297] log likelihood: -7163.966968
EM: Round [298] log likelihood: -7163.966503
EM: Round [299] log likelihood: -7163.966043
EM: Round [300] log likelihood: -7163.965585
EM: Round [301] log likelihood: -7163.965131
EM: Round [302] log likelihood: -7163.964681
EM: Round [303] log likelihood: -7163.964233
EM: Round [304] log likelihood: -7163.963789
EM: Round [305] log likelihood: -7163.963348
EM: Round [306] log likelihood: -7163.962911
EM: Round [307] log likelihood: -7163.962477
EM: Round [308] log likelihood: -7163.962046
EM: Round [309] log likelihood: -7163.961618
EM: Round [310] log likelihood: -7163.961193
EM: Round [311] log likelihood: -7163.960772
EM: Round [312] log likelihood: -7163.960353
EM: Round [313] log likelihood: -7163.959938
EM: Round [314] log likelihood: -7163.959525
EM: Round [315] log likelihood: -7163.959116
EM: Round [316] log likelihood: -7163.958710
EM: Round [317] log likelihood: -7163.958306
EM: Round [318] log likelihood: -7163.957906
EM: Round [319] log likelihood: -7163.957509
EM: Round [320] log likelihood: -7163.957114
EM: Round [321] log likelihood: -7163.956722
EM: Round [322] log likelihood: -7163.956334
EM: Round [323] log likelihood: -7163.955948
EM: Round [324] log likelihood: -7163.955565
EM: Round [325] log likelihood: -7163.955184
EM: Round [326] log likelihood: -7163.954807
EM: Round [327] log likelihood: -7163.954432
EM: Round [328] log likelihood: -7163.954060
EM: Round [329] log likelihood: -7163.953691
EM: Round [330] log likelihood: -7163.953324
EM: Round [331] log likelihood: -7163.952961
EM: Round [332] log likelihood: -7163.952599
EM: Round [333] log likelihood: -7163.952241
EM: Round [334] log likelihood: -7163.951885
EM: Round [335] log likelihood: -7163.951531
EM: Round [336] log likelihood: -7163.951181
EM: Round [337] log likelihood: -7163.950832
EM: Round [338] log likelihood: -7163.950487
EM: Round [339] log likelihood: -7163.950144
EM: Round [340] log likelihood: -7163.949803
EM: Round [341] log likelihood: -7163.949465
EM: Round [342] log likelihood: -7163.949129
EM: Round [343] log likelihood: -7163.948796
EM: Round [344] log likelihood: -7163.948465
EM: Round [345] log likelihood: -7163.948136
EM: Round [346] log likelihood: -7163.947810
EM: Round [347] log likelihood: -7163.947487
EM: Round [348] log likelihood: -7163.947165
EM: Round [349] log likelihood: -7163.946846
EM: Round [350] log likelihood: -7163.946529
EM: Round [351] log likelihood: -7163.946215
EM: Round [352] log likelihood: -7163.945903
EM: Round [353] log likelihood: -7163.945593
EM: Round [354] log likelihood: -7163.945285
EM: Round [355] log likelihood: -7163.944980
EM: Round [356] log likelihood: -7163.944677
EM: Round [357] log likelihood: -7163.944376
EM: Round [358] log likelihood: -7163.944077
EM: Round [359] log likelihood: -7163.943781
EM: Round [360] log likelihood: -7163.943486
EM: Round [361] log likelihood: -7163.943194
EM: Round [362] log likelihood: -7163.942903
EM: Round [363] log likelihood: -7163.942615
EM: Round [364] log likelihood: -7163.942329
EM: Round [365] log likelihood: -7163.942045
EM: Round [366] log likelihood: -7163.941763
EM: Round [367] log likelihood: -7163.941483
EM: Round [368] log likelihood: -7163.941206
EM: Round [369] log likelihood: -7163.940930
EM: Round [370] log likelihood: -7163.940656
EM: Round [371] log likelihood: -7163.940384
EM: Round [372] log likelihood: -7163.940114
EM: Round [373] log likelihood: -7163.939846
EM: Round [374] log likelihood: -7163.939580
EM: Round [375] log likelihood: -7163.939316
EM: Round [376] log likelihood: -7163.939054
EM: Round [377] log likelihood: -7163.938793
EM: Round [378] log likelihood: -7163.938535
EM: Round [379] log likelihood: -7163.938278
EM: Round [380] log likelihood: -7163.938023
EM: Round [381] log likelihood: -7163.937770
EM: Round [382] log likelihood: -7163.937519
EM: Round [383] log likelihood: -7163.937270
EM: Round [384] log likelihood: -7163.937022
EM: Round [385] log likelihood: -7163.936777
EM: Round [386] log likelihood: -7163.936533
EM: Round [387] log likelihood: -7163.936291
EM: Round [388] log likelihood: -7163.936050
EM: Round [389] log likelihood: -7163.935811
EM: Round [390] log likelihood: -7163.935574
EM: Round [391] log likelihood: -7163.935339
EM: Round [392] log likelihood: -7163.935105
EM: Round [393] log likelihood: -7163.934873
EM: Round [394] log likelihood: -7163.934643
EM: Round [395] log likelihood: -7163.934414
EM: Round [396] log likelihood: -7163.934187
EM: Round [397] log likelihood: -7163.933962
EM: Round [398] log likelihood: -7163.933738
EM: Round [399] log likelihood: -7163.933516
EM: Round [400] log likelihood: -7163.933295
EM: Round [401] log likelihood: -7163.933076
EM: Round [402] log likelihood: -7163.932859
EM: Round [403] log likelihood: -7163.932643
EM: Round [404] log likelihood: -7163.932429
EM: Round [405] log likelihood: -7163.932216
EM: Round [406] log likelihood: -7163.932005
EM: Round [407] log likelihood: -7163.931795
EM: Round [408] log likelihood: -7163.931587
EM: Round [409] log likelihood: -7163.931380
EM: Round [410] log likelihood: -7163.931175
EM: Round [411] log likelihood: -7163.930971
EM: Round [412] log likelihood: -7163.930768
EM: Round [413] log likelihood: -7163.930568
EM: Round [414] log likelihood: -7163.930368
EM: Round [415] log likelihood: -7163.930170
EM: Round [416] log likelihood: -7163.929973
EM: Round [417] log likelihood: -7163.929778
EM: Round [418] log likelihood: -7163.929584
EM: Round [419] log likelihood: -7163.929392
EM: Round [420] log likelihood: -7163.929201
EM: Round [421] log likelihood: -7163.929011
EM: Round [422] log likelihood: -7163.928823
EM: Round [423] log likelihood: -7163.928636
EM: Round [424] log likelihood: -7163.928450
EM: Round [425] log likelihood: -7163.928265
EM: Round [426] log likelihood: -7163.928082
EM: Round [427] log likelihood: -7163.927901
EM: Round [428] log likelihood: -7163.927720
EM: Round [429] log likelihood: -7163.927541
EM: Round [430] log likelihood: -7163.927363
EM: Round [431] log likelihood: -7163.927186
EM: Round [432] log likelihood: -7163.927011
EM: Round [433] log likelihood: -7163.926837
EM: Round [434] log likelihood: -7163.926664
EM: Round [435] log likelihood: -7163.926492
EM: Round [436] log likelihood: -7163.926322
EM: Round [437] log likelihood: -7163.926153
EM: Round [438] log likelihood: -7163.925985
EM: Round [439] log likelihood: -7163.925818
EM: Round [440] log likelihood: -7163.925652
EM: Round [441] log likelihood: -7163.925488
EM: Round [442] log likelihood: -7163.925324
EM: Round [443] log likelihood: -7163.925162
EM: Round [444] log likelihood: -7163.925001
EM: Round [445] log likelihood: -7163.924842
EM: Round [446] log likelihood: -7163.924683
EM: Round [447] log likelihood: -7163.924525
EM: Round [448] log likelihood: -7163.924369
EM: Round [449] log likelihood: -7163.924213
EM: Round [450] log likelihood: -7163.924059
EM: Round [451] log likelihood: -7163.923906
EM: Round [452] log likelihood: -7163.923754
EM: Round [453] log likelihood: -7163.923603
EM: Round [454] log likelihood: -7163.923453
EM: Round [455] log likelihood: -7163.923304
EM: Round [456] log likelihood: -7163.923156
EM: Round [457] log likelihood: -7163.923010
EM: Round [458] log likelihood: -7163.922864
EM: Round [459] log likelihood: -7163.922719
EM: Round [460] log likelihood: -7163.922576
EM: Round [461] log likelihood: -7163.922433
EM: Round [462] log likelihood: -7163.922291
EM: Round [463] log likelihood: -7163.922151
EM: Round [464] log likelihood: -7163.922011
EM: Round [465] log likelihood: -7163.921873
EM: Round [466] log likelihood: -7163.921735
EM: Round [467] log likelihood: -7163.921598
EM: Round [468] log likelihood: -7163.921463
EM: Round [469] log likelihood: -7163.921328
EM: Round [470] log likelihood: -7163.921194
EM: Round [471] log likelihood: -7163.921061
EM: Round [472] log likelihood: -7163.920929
EM: Round [473] log likelihood: -7163.920798
EM: Round [474] log likelihood: -7163.920668
EM: Round [475] log likelihood: -7163.920539
EM: Round [476] log likelihood: -7163.920411
EM: Round [477] log likelihood: -7163.920284
EM: Round [478] log likelihood: -7163.920157
EM: Round [479] log likelihood: -7163.920032
EM: Round [480] log likelihood: -7163.919907
EM: Round [481] log likelihood: -7163.919783
EM: Round [482] log likelihood: -7163.919660
EM: Round [483] log likelihood: -7163.919538
EM: Round [484] log likelihood: -7163.919417
EM: Round [485] log likelihood: -7163.919297
EM: Round [486] log likelihood: -7163.919178
EM: Round [487] log likelihood: -7163.919059
EM: Round [488] log likelihood: -7163.918941
EM: Round [489] log likelihood: -7163.918824
EM: Round [490] log likelihood: -7163.918708
EM: Round [491] log likelihood: -7163.918593
EM: Round [492] log likelihood: -7163.918478
EM: Round [493] log likelihood: -7163.918365
EM: Round [494] log likelihood: -7163.918252
EM: Round [495] log likelihood: -7163.918140
EM: Round [496] log likelihood: -7163.918029
EM: Round [497] log likelihood: -7163.917918
EM: Round [498] log likelihood: -7163.917808
EM: Round [499] log likelihood: -7163.917699
EM: Round [500] log likelihood: -7163.917591
EM: Round [501] log likelihood: -7163.917484
EM: Round [502] log likelihood: -7163.917377
EM: Round [503] log likelihood: -7163.917271
EM: Round [504] log likelihood: -7163.917166
EM: Round [505] log likelihood: -7163.917062
EM: Round [506] log likelihood: -7163.916958
EM: Round [507] log likelihood: -7163.916855
EM: Round [508] log likelihood: -7163.916753
EM: Round [509] log likelihood: -7163.916652
EM: Round [510] log likelihood: -7163.916551
EM: Round [511] log likelihood: -7163.916451
EM: Round [512] log likelihood: -7163.916351
EM: Stopping iterations at round 512 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam into /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam.read_coords
CMD: touch /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam.read_coords > /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam.frag_coords > /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: cp /tmp/nxf.o4DreIYIT5/fi_workdir/tih_rna_sample_00163_B23WHTKLT4_2.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -6968.903899
EM: Round [1] log likelihood: -6967.186293
EM: Round [2] log likelihood: -6967.185637
EM: Round [3] log likelihood: -6967.185637
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2_1.fastp.fastq.gz: 295174898
Warning - not locating file: /tmp/nxf.o4DreIYIT5/tih_rna_sample_00163_B23WHTKLT4_2.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000228159.2]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000268981.5]
ls: cannot access 'IGV_inputs': No such file or directory