File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/5666acd66656e56bf9a00cec2dfe95/run_level_intermediate.tsv
Size
2.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:RUN_LEVEL_INTERMEDIATE (run_level_qc)
Attempt

Content

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SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 75.8129 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 93.9553 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 88.9979 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9339.89922475 bclconvert
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 519197311 bclconvert
NTC_0001_0001_B23WHTKLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 839474 bclconvert
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 592410540.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.947355 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.97532 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.045128 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.02468 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 336060150.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 170826735.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 16008505.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 4322675.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 285788252.0 star
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004501 star
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 162.0 kallisto
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.015 kallisto
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 4.815 kallisto
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.47 contamination
NTC_0001_0001_B23WHTKLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 53950.0 seqtools
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 76 fusion
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_13_B23WHTKLT4_1 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 76 fusion
28 rows