File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/88caaae735347dd57d014e6bb2151b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:17:49
                             Started mapping on |	Jun 08 10:24:29
                                    Finished on |	Jun 08 11:44:47
       Mapping speed, Million of reads per hour |	221.06

                          Number of input reads |	295851949
                      Average input read length |	263
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283838455
                        Uniquely mapped reads % |	95.94%
                          Average mapped length |	262.09
                       Number of splices: Total |	372238100
            Number of splices: Annotated (sjdb) |	367445575
                       Number of splices: GT/AG |	368044527
                       Number of splices: GC/AG |	2158526
                       Number of splices: AT/AC |	295236
               Number of splices: Non-canonical |	1739811
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.16
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.48
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9409045
             % of reads mapped to multiple loci |	3.18%
        Number of reads mapped to too many loci |	306456
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2026811
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	271182
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%