Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/2a72abe7d8f285fcd2cfc4fb4e2849/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/446451d3d89ff3671a2d60ed9f0977/659_cTi-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/2a72abe7d8f285fcd2cfc4fb4e2849/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 292199530
unpaired = 4705774
MERGED PAIRED END READS = 292199530
MATES PROCESSED = 589104834
TOTAL READS     = 296905304
DISTINCT READS  = 6.84304e+07
DISTINCT COUNTS = 1182
MAX COUNT       = 794201
COUNTS OF 1     = 1.69306e+07
MAX TERMS       = 100
OBSERVED COUNTS (794202)
1	16930602
2	11781342
3	9549917
4	7564768
5	5804289
6	4333634
7	3184635
8	2315761
9	1675436
10	1213783
11	883885
12	649959
13	485079
14	366523
15	280697
16	218842
17	172644
18	137558
19	110607
20	91090
21	74450
22	62191
23	52530
24	44755
25	38521
26	32893
27	28968
28	25160
29	22377
30	19736
31	17709
32	15863
33	14141
34	12997
35	12034
36	10763
37	9935
38	9197
39	8261
40	7824
41	7198
42	6760
43	6237
44	5813
45	5365
46	5141
47	4755
48	4373
49	4129
50	3983
51	3762
52	3532
53	3262
54	3135
55	3011
56	2784
57	2650
58	2631
59	2556
60	2336
61	2206
62	2132
63	1985
64	2014
65	1836
66	1788
67	1633
68	1716
69	1494
70	1519
71	1503
72	1391
73	1314
74	1237
75	1241
76	1183
77	1142
78	1089
79	1060
80	1075
81	1036
82	972
83	934
84	869
85	837
86	877
87	842
88	774
89	695
90	733
91	693
92	692
93	664
94	620
95	689
96	588
97	578
98	573
99	567
100	566
101	523
102	515
103	529
104	490
105	530
106	441
107	443
108	471
109	464
110	409
111	433
112	377
113	376
114	353
115	389
116	371
117	374
118	338
119	305
120	323
121	292
122	363
123	312
124	314
125	280
126	267
127	307
128	268
129	278
130	272
131	258
132	256
133	244
134	263
135	246
136	246
137	267
138	245
139	219
140	207
141	228
142	219
143	203
144	179
145	243
146	204
147	170
148	204
149	188
150	165
151	163
152	195
153	184
154	163
155	159
156	170
157	182
158	133
159	134
160	161
161	127
162	152
163	131
164	144
165	126
166	130
167	143
168	124
169	130
170	119
171	100
172	117
173	127
174	118
175	101
176	111
177	110
178	101
179	110
180	119
181	98
182	99
183	104
184	97
185	96
186	105
187	100
188	87
189	81
190	81
191	88
192	93
193	85
194	86
195	87
196	87
197	78
198	95
199	81
200	83
201	101
202	91
203	60
204	78
205	77
206	66
207	75
208	73
209	63
210	58
211	80
212	72
213	84
214	71
215	80
216	75
217	57
218	55
219	59
220	71
221	55
222	65
223	41
224	55
225	58
226	47
227	65
228	59
229	69
230	66
231	50
232	70
233	58
234	54
235	46
236	43
237	54
238	44
239	51
240	55
241	55
242	33
243	39
244	48
245	34
246	47
247	36
248	42
249	46
250	35
251	35
252	45
253	47
254	47
255	40
256	34
257	53
258	55
259	41
260	30
261	44
262	37
263	30
264	32
265	40
266	41
267	29
268	36
269	30
270	28
271	25
272	36
273	31
274	28
275	33
276	44
277	26
278	39
279	36
280	27
281	35
282	28
283	40
284	32
285	19
286	28
287	23
288	28
289	40
290	27
291	31
292	24
293	31
294	28
295	24
296	32
297	25
298	22
299	26
300	20
301	14
302	25
303	23
304	30
305	18
306	25
307	29
308	21
309	26
310	23
311	26
312	20
313	24
314	33
315	22
316	15
317	24
318	22
319	16
320	16
321	22
322	23
323	12
324	15
325	24
326	18
327	20
328	26
329	17
330	22
331	19
332	19
333	15
334	13
335	17
336	14
337	18
338	15
339	16
340	22
341	20
342	15
343	17
344	18
345	13
346	21
347	22
348	20
349	12
350	13
351	7
352	21
353	18
354	21
355	13
356	12
357	14
358	11
359	19
360	11
361	20
362	16
363	11
364	13
365	16
366	11
367	19
368	22
369	11
370	9
371	12
372	15
373	16
374	10
375	8
376	10
377	14
378	19
379	12
380	13
381	10
382	19
383	10
384	6
385	7
386	13
387	11
388	10
389	14
390	12
391	13
392	17
393	16
394	15
395	15
396	11
397	15
398	16
399	10
400	10
401	6
402	11
403	12
404	11
405	13
406	11
407	8
408	7
409	15
410	12
411	11
412	13
413	10
414	12
415	14
416	10
417	10
418	8
419	19
420	8
421	15
422	9
423	14
424	6
425	12
426	9
427	11
428	8
429	11
430	7
431	8
432	8
433	8
434	7
435	6
436	2
437	9
438	5
439	13
440	8
441	4
442	5
443	8
444	2
445	8
446	2
447	5
448	3
449	8
450	7
451	6
452	2
453	12
454	3
455	6
456	8
457	6
458	8
459	6
460	9
461	5
462	8
463	4
464	6
465	6
466	9
467	10
468	12
469	9
470	8
471	7
472	6
473	10
474	4
475	7
476	5
477	3
478	7
479	5
480	8
481	7
482	6
483	8
484	12
485	4
486	9
487	7
488	6
489	4
490	3
491	7
492	10
493	5
494	6
495	8
496	3
497	6
498	1
499	7
500	5
501	9
502	5
503	6
504	8
505	5
506	7
507	8
508	3
509	3
510	4
511	6
512	1
513	3
514	12
515	3
516	3
517	5
518	3
519	7
520	5
521	4
522	4
523	3
524	1
525	6
526	7
527	7
528	5
529	5
530	3
531	7
532	5
533	7
534	7
535	2
536	4
537	7
538	3
539	9
540	4
541	5
542	2
543	3
544	4
545	2
546	6
547	1
548	3
549	4
550	6
551	2
552	5
553	5
554	3
555	1
556	6
557	8
558	6
559	1
560	4
561	2
562	5
563	2
564	4
565	4
566	6
567	4
568	3
569	3
570	3
571	2
572	1
573	2
574	2
575	4
576	6
577	2
578	2
579	10
580	3
581	3
582	4
583	3
584	6
585	6
586	8
587	3
588	1
589	5
590	7
591	4
592	1
593	4
594	5
595	5
596	8
597	1
598	8
599	4
600	1
601	4
602	3
603	2
604	3
605	9
606	3
607	1
608	2
609	4
610	3
611	3
612	3
613	1
614	2
615	3
616	4
617	2
618	7
619	3
620	5
621	2
622	2
623	2
624	5
625	2
626	2
627	4
628	3
629	1
630	4
631	1
633	5
634	2
636	3
637	3
638	4
639	3
640	6
641	3
642	2
643	4
645	4
646	5
647	2
648	3
649	5
650	3
651	3
652	3
653	3
654	3
655	3
657	4
658	2
659	2
660	2
661	5
662	3
663	5
666	3
667	3
668	2
669	2
670	3
671	6
672	1
673	1
674	2
675	1
676	3
677	4
679	2
680	6
681	4
682	4
683	1
684	4
685	1
686	2
687	1
688	2
689	1
690	1
691	3
692	4
693	4
694	2
695	1
696	3
697	2
699	1
700	3
701	1
702	4
704	1
705	3
706	2
707	4
708	1
709	1
710	2
711	4
712	4
713	1
714	1
715	5
716	2
717	4
718	4
720	2
721	3
722	3
723	3
724	1
725	1
726	1
727	1
728	1
729	3
730	3
731	2
732	2
733	2
734	2
735	3
736	1
737	1
738	5
741	1
742	1
745	1
746	2
747	1
748	1
750	2
751	1
752	1
753	1
754	4
756	3
757	1
758	2
759	2
760	1
761	4
764	2
765	2
766	1
767	3
768	3
769	2
770	3
772	1
773	4
774	1
775	3
776	5
777	1
778	2
779	1
781	2
783	1
784	2
786	1
787	1
788	1
789	2
790	2
792	2
793	2
794	1
796	1
797	3
798	2
799	2
800	2
801	1
803	3
804	2
805	1
806	2
807	4
808	1
810	1
811	1
813	2
814	1
816	1
817	1
818	1
820	1
821	1
824	2
827	2
828	3
829	1
830	3
831	1
832	1
833	1
834	1
835	1
837	1
839	2
840	3
841	3
842	1
843	1
844	1
845	3
846	1
847	1
850	2
853	3
854	1
855	1
857	2
858	1
859	2
862	1
863	1
864	1
865	3
866	3
867	2
868	1
871	5
872	2
875	2
876	4
878	2
880	1
881	1
884	1
885	1
887	2
890	1
892	1
893	2
895	2
897	1
898	1
900	1
905	3
906	1
907	1
908	1
909	1
914	2
915	1
916	2
918	1
919	2
920	1
921	3
922	2
926	1
927	1
929	1
930	2
931	1
932	3
933	1
936	2
937	1
938	1
940	1
941	1
943	1
944	2
945	1
947	2
950	1
953	1
955	1
956	1
958	1
959	3
960	2
964	1
965	2
967	1
968	1
971	1
973	3
976	1
978	1
980	1
981	1
983	1
986	1
988	2
989	1
991	2
992	1
993	1
995	1
996	1
1000	1
1001	1
1002	1
1004	1
1005	1
1006	1
1007	1
1009	1
1010	1
1013	1
1014	1
1015	1
1017	1
1018	1
1022	1
1023	1
1024	2
1025	1
1028	2
1035	2
1037	2
1038	1
1039	1
1040	1
1041	2
1042	4
1046	1
1047	3
1049	1
1051	2
1053	1
1054	1
1055	1
1062	1
1064	3
1065	1
1066	1
1068	1
1073	1
1075	2
1076	1
1077	1
1078	1
1081	2
1084	1
1085	3
1086	1
1087	1
1088	1
1089	1
1090	2
1091	1
1092	4
1093	1
1094	1
1095	1
1099	2
1101	1
1102	2
1103	1
1105	1
1107	1
1109	2
1111	2
1112	2
1114	1
1115	1
1116	1
1118	2
1119	1
1121	2
1123	2
1125	1
1131	1
1132	1
1134	1
1135	1
1136	1
1139	1
1146	1
1147	1
1148	2
1152	1
1157	1
1160	2
1161	1
1162	1
1165	1
1166	1
1167	1
1171	1
1172	1
1174	1
1175	1
1180	1
1182	2
1185	1
1188	1
1191	1
1199	1
1201	1
1202	1
1205	1
1208	1
1210	1
1218	1
1220	1
1222	2
1231	1
1232	1
1238	1
1241	1
1243	1
1245	1
1246	1
1247	1
1249	2
1252	1
1253	1
1256	2
1257	1
1259	1
1262	1
1264	1
1274	1
1275	2
1283	1
1285	2
1287	1
1291	2
1297	1
1298	2
1300	3
1308	1
1309	2
1311	1
1320	1
1326	1
1329	1
1338	1
1347	1
1353	1
1363	1
1376	1
1378	1
1382	1
1388	1
1389	1
1396	1
1399	1
1405	1
1406	1
1407	1
1410	1
1415	1
1422	1
1431	1
1442	1
1443	1
1444	1
1450	2
1451	1
1452	1
1456	2
1460	1
1467	1
1469	1
1474	1
1476	1
1484	1
1488	1
1489	1
1492	2
1497	1
1498	1
1504	2
1518	1
1519	1
1521	1
1526	1
1528	1
1529	2
1532	1
1536	1
1539	1
1542	1
1547	1
1553	1
1558	1
1561	1
1576	1
1579	1
1581	1
1588	1
1613	1
1618	1
1628	1
1636	2
1642	1
1646	1
1656	1
1658	1
1669	1
1680	1
1683	1
1698	1
1718	1
1724	1
1729	1
1753	1
1780	1
1781	1
1782	1
1788	1
1792	1
1802	1
1819	1
1835	1
1873	1
1887	1
1900	1
1906	1
1939	1
1944	1
1949	1
1972	1
1984	1
1994	1
1999	1
2008	1
2011	1
2041	1
2067	1
2077	1
2082	1
2098	1
2131	1
2146	1
2217	1
2222	1
2251	1
2254	1
2266	1
2273	1
2300	1
2304	1
2316	1
2321	1
2345	1
2384	1
2433	1
2438	1
2441	1
2584	1
2607	1
2615	1
2722	1
2753	1
2793	1
2812	1
2881	1
3042	1
3061	1
3071	1
3073	1
3077	1
3139	1
3168	1
3205	1
3622	1
3838	1
3915	1
4272	1
4712	1
4838	1
5106	1
5333	1
6194	1
7939	1
10066	1
10496	1
12486	1
50496	1
794201	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................_..............._.........._........._..........
....._....................._......
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]