Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/426fc4c9e5b1d3bbc25c389f266aaa/659_6i-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/a82c1031df27c7f7d12fedb3ea4269/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/a82c1031df27c7f7d12fedb3ea4269/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
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Processed 356000000 records
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Processed 360000000 records
Processed 361000000 records
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Processed 384000000 records
paired = 190869433
unpaired = 2982880
MERGED PAIRED END READS = 190869433
MATES PROCESSED = 384721746
TOTAL READS     = 193852313
DISTINCT READS  = 2.55066e+07
DISTINCT COUNTS = 544
MAX COUNT       = 410361
COUNTS OF 1     = 5.46647e+06
MAX TERMS       = 100
OBSERVED COUNTS (410362)
1	5466474
2	2329684
3	1871094
4	1706161
5	1580959
6	1459877
7	1334701
8	1213050
9	1092048
10	975853
11	862497
12	760466
13	665103
14	576891
15	499377
16	428629
17	369499
18	315866
19	270595
20	230549
21	196651
22	167492
23	143722
24	123097
25	105687
26	89903
27	76800
28	66641
29	58209
30	50651
31	43582
32	38156
33	33350
34	29334
35	26182
36	23047
37	20620
38	18231
39	16241
40	14497
41	13281
42	11752
43	10815
44	9531
45	8653
46	7915
47	7124
48	6466
49	5940
50	5437
51	4899
52	4376
53	4108
54	3669
55	3430
56	3054
57	2819
58	2660
59	2326
60	2112
61	2044
62	1830
63	1721
64	1543
65	1441
66	1355
67	1208
68	1070
69	998
70	991
71	925
72	866
73	815
74	754
75	728
76	678
77	665
78	613
79	565
80	525
81	506
82	444
83	450
84	449
85	392
86	418
87	369
88	362
89	320
90	317
91	286
92	284
93	266
94	266
95	253
96	232
97	250
98	212
99	256
100	196
101	205
102	206
103	175
104	221
105	164
106	152
107	188
108	127
109	160
110	124
111	139
112	122
113	118
114	115
115	113
116	95
117	97
118	101
119	103
120	100
121	78
122	88
123	86
124	80
125	88
126	91
127	90
128	77
129	84
130	69
131	59
132	65
133	69
134	67
135	62
136	57
137	60
138	57
139	45
140	44
141	49
142	52
143	53
144	44
145	42
146	37
147	30
148	31
149	40
150	28
151	45
152	32
153	33
154	38
155	29
156	36
157	27
158	38
159	33
160	35
161	28
162	28
163	28
164	27
165	32
166	32
167	29
168	17
169	22
170	17
171	25
172	27
173	26
174	24
175	22
176	20
177	30
178	18
179	23
180	17
181	15
182	17
183	11
184	16
185	19
186	9
187	17
188	16
189	17
190	20
191	15
192	15
193	24
194	17
195	20
196	21
197	14
198	11
199	18
200	14
201	14
202	17
203	11
204	14
205	11
206	10
207	8
208	19
209	13
210	12
211	15
212	10
213	9
214	13
215	6
216	9
217	9
218	9
219	13
220	4
221	2
222	3
223	10
224	7
225	12
226	6
227	4
228	8
229	7
230	11
231	5
232	8
233	6
234	11
235	6
236	9
237	14
238	7
239	10
240	6
241	9
242	5
243	3
244	3
245	9
246	14
247	6
248	6
249	6
250	5
251	5
252	9
253	6
254	6
255	8
256	5
257	4
258	5
259	5
260	5
261	3
262	4
263	8
264	2
265	6
266	4
267	4
268	4
269	3
270	6
271	3
272	6
273	5
274	5
275	2
276	5
277	2
278	3
279	5
280	3
281	4
282	5
283	4
285	3
286	4
287	4
288	1
289	5
290	4
292	6
293	2
294	5
295	6
296	5
297	3
298	4
299	1
300	3
301	2
302	5
303	4
304	3
306	4
307	2
308	3
309	6
310	1
311	2
312	6
313	3
314	6
315	5
316	2
317	4
318	2
319	1
320	2
321	1
322	2
323	2
324	6
325	4
326	3
327	2
328	2
332	2
333	1
334	1
335	2
336	1
337	4
339	2
341	1
342	2
343	1
344	1
346	3
347	3
348	1
349	2
350	4
351	4
352	2
353	2
355	2
356	1
357	2
359	1
360	2
361	2
362	4
364	1
365	2
366	2
367	3
368	5
370	1
371	1
373	1
374	2
375	1
378	1
379	2
380	1
381	4
382	1
383	2
384	3
385	3
387	2
388	1
390	1
393	2
394	3
395	3
396	1
397	1
399	1
400	2
402	2
403	1
404	2
407	1
408	2
409	2
410	2
411	2
417	2
419	1
421	3
424	1
425	3
427	2
428	2
431	1
432	2
433	1
435	1
438	1
439	1
441	4
442	1
443	3
444	1
445	1
446	2
447	1
448	1
451	1
454	1
455	1
458	2
459	1
460	2
461	2
464	1
465	2
471	2
474	2
475	1
476	2
478	1
481	1
482	2
485	3
487	1
488	1
490	1
492	1
493	3
495	1
499	1
500	1
501	2
504	1
505	1
506	1
508	1
510	1
511	1
514	1
515	1
516	2
519	1
525	1
526	1
527	1
530	1
534	1
535	1
549	1
550	1
553	1
556	2
558	1
559	2
566	2
569	2
577	1
585	1
586	1
594	1
599	1
600	1
604	1
605	1
611	1
612	1
615	1
617	2
618	1
620	1
623	1
624	2
626	1
629	1
650	2
659	1
661	1
662	1
675	1
677	1
689	1
693	1
694	2
710	1
712	1
713	1
729	1
731	1
733	1
736	1
744	1
751	1
753	1
755	1
759	1
775	1
776	1
781	1
786	1
792	1
798	1
808	1
810	1
831	1
853	1
863	1
872	1
874	1
887	1
890	1
896	1
908	1
911	1
912	1
919	1
929	1
939	1
940	1
953	1
961	1
968	1
972	1
1015	1
1037	1
1086	1
1167	1
1172	1
1280	1
1300	1
1303	1
1377	1
1430	1
1456	1
1617	1
1819	1
1848	1
3349	1
4517	1
5509	1
6893	1
20219	1
410361	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........._......_..._....._....._................._............._._.....
..._.............................._...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]