Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/508a4cbcad9f40aaff33f8c9a130bf/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/99426b46a14ecc352beb62d3c9fbc6/659_epP-T1-TRNA-1_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/508a4cbcad9f40aaff33f8c9a130bf/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory