Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/09d6d8818bb886af05a95901faca5a/659_bGW-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/ad9562db21a73793fdf2be075e5b94/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/cfd775d84395e293de2d0317567d85/659_bGW-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/ad9562db21a73793fdf2be075e5b94/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
0%| | 0/18 [00:00<?, ?it/s]PTPRK--RSPO3
starfusion
arriba
DLG5--KCNMA1
starfusion
arriba
POLR2E--KEAP1
starfusion
arriba
WDR19--ATP8A1
starfusion
arriba
DLG5--CTSLP1
starfusion
RFC1--GPRC5A
starfusion
GPRC5A--RFC1
starfusion
arriba
SULT1B1--TBC1D1
arriba
SULT1B1--AC098680.2
arriba
PKP2--PKP2
arriba
PKP2--ASS1P14
arriba
JMJD1C--LINC00841
arriba
JMJD1C--AL137026.2
arriba
TYK2--SBNO2
arriba
SLC5A3--RUNX1
arriba
MRPS6--RUNX1
arriba
TVP23C--CDRT4
arriba
ANKRD24--KEAP1
arriba
Processing PTPRK--RSPO3: 0%| | 0/18 [00:00<?, ?it/s]
Processing PTPRK--RSPO3: 6%|▌ | 1/18 [00:00<00:01, 9.25it/s]
Processing DLG5--KCNMA1: 6%|▌ | 1/18 [00:00<00:01, 9.25it/s]
Processing DLG5--KCNMA1: 11%|█ | 2/18 [00:00<00:01, 9.48it/s]
Processing POLR2E--KEAP1: 11%|█ | 2/18 [00:00<00:01, 9.48it/s]
Processing POLR2E--KEAP1: 17%|█▋ | 3/18 [00:00<00:01, 9.55it/s]
Processing WDR19--ATP8A1: 17%|█▋ | 3/18 [00:00<00:01, 9.55it/s]
Processing WDR19--ATP8A1: 22%|██▏ | 4/18 [00:00<00:01, 9.59it/s]
Processing DLG5--CTSLP1: 22%|██▏ | 4/18 [00:00<00:01, 9.59it/s]
Processing DLG5--CTSLP1: 28%|██▊ | 5/18 [00:00<00:01, 9.61it/s]
Processing RFC1--GPRC5A: 28%|██▊ | 5/18 [00:00<00:01, 9.61it/s]
Processing RFC1--GPRC5A: 33%|███▎ | 6/18 [00:00<00:01, 9.62it/s]
Processing GPRC5A--RFC1: 33%|███▎ | 6/18 [00:00<00:01, 9.62it/s]
Processing GPRC5A--RFC1: 39%|███▉ | 7/18 [00:00<00:01, 9.63it/s]
Processing SULT1B1--TBC1D1: 39%|███▉ | 7/18 [00:00<00:01, 9.63it/s]
Processing SULT1B1--TBC1D1: 44%|████▍ | 8/18 [00:00<00:01, 9.64it/s]
Processing SULT1B1--AC098680.2: 44%|████▍ | 8/18 [00:00<00:01, 9.64it/s]
Processing SULT1B1--AC098680.2: 50%|█████ | 9/18 [00:00<00:00, 9.64it/s]
Processing PKP2--PKP2: 50%|█████ | 9/18 [00:00<00:00, 9.64it/s]
Processing PKP2--PKP2: 56%|█████▌ | 10/18 [00:01<00:00, 9.63it/s]
Processing PKP2--ASS1P14: 56%|█████▌ | 10/18 [00:01<00:00, 9.63it/s]
Processing PKP2--ASS1P14: 61%|██████ | 11/18 [00:01<00:00, 9.64it/s]
Processing JMJD1C--LINC00841: 61%|██████ | 11/18 [00:01<00:00, 9.64it/s]
Processing JMJD1C--LINC00841: 67%|██████▋ | 12/18 [00:01<00:00, 9.64it/s]
Processing JMJD1C--AL137026.2: 67%|██████▋ | 12/18 [00:01<00:00, 9.64it/s]
Processing JMJD1C--AL137026.2: 72%|███████▏ | 13/18 [00:01<00:00, 9.64it/s]
Processing TYK2--SBNO2: 72%|███████▏ | 13/18 [00:01<00:00, 9.64it/s]
Processing TYK2--SBNO2: 78%|███████▊ | 14/18 [00:01<00:00, 9.64it/s]
Processing SLC5A3--RUNX1: 78%|███████▊ | 14/18 [00:01<00:00, 9.64it/s]
Processing SLC5A3--RUNX1: 83%|████████▎ | 15/18 [00:01<00:00, 9.64it/s]
Processing MRPS6--RUNX1: 83%|████████▎ | 15/18 [00:01<00:00, 9.64it/s]
Processing MRPS6--RUNX1: 89%|████████▉ | 16/18 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 89%|████████▉ | 16/18 [00:01<00:00, 9.64it/s]
Processing TVP23C--CDRT4: 94%|█████████▍| 17/18 [00:01<00:00, 9.65it/s]
Processing ANKRD24--KEAP1: 94%|█████████▍| 17/18 [00:01<00:00, 9.65it/s]
Processing ANKRD24--KEAP1: 100%|██████████| 18/18 [00:01<00:00, 9.65it/s]
Processing ANKRD24--KEAP1: 100%|██████████| 18/18 [00:01<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory