.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (659_bGc-T1-TRNA-1_B23WHTKLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/75a742128c51a3dec97f49d438de43/.command.log
Size: 72.8 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (659_bGc-T1-TRNA-1_B23WHTKLT4_1)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/8f45fd2eb51d82dd397ffdc1de7cdc/659_bGc-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/75a742128c51a3dec97f49d438de43/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/75a742128c51a3dec97f49d438de43/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/e9cac3909e5c2ce02225678486f15e/659_bGc-T1-TRNA-1_B23WHTKLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/e9cac3909e5c2ce02225678486f15e/659_bGc-T1-TRNA-1_B23WHTKLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.0ieyki3J3l/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary
-sample contains 190989666 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir  -J /tmp/nxf.0ieyki3J3l/659_bGc-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction  -O /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.0ieyki3J3l/659_bGc-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[1560000], rate=58100.56/min -building interval tree based on /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[1560000], rate=54994.12/min -building interval tree based on /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[1560000], rate=46964.38/min -building interval tree based on /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[280000], rate=73684.21/min 
[290000], rate=70445.34/min 
[300000], rate=66666.67/min 
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[330000], rate=59281.44/min 
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[360000], rate=54000.00/min 
[370000], rate=52482.27/min 
[380000], rate=51351.35/min 
[390000], rate=50322.58/min 
[400000], rate=49281.31/min 
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[440000], rate=46975.09/min 
[450000], rate=46632.12/min 
[460000], rate=46308.72/min 
[470000], rate=46153.85/min 
[480000], rate=46080.00/min 
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[530000], rate=45624.10/min 
[540000], rate=45569.62/min 
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[570000], rate=45298.01/min 
[580000], rate=45312.50/min 
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[620000], rate=45644.17/min 
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[710000], rate=47280.80/min 
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[1540000], rate=45472.44/min 
[1550000], rate=45543.58/min 
[1560000], rate=45636.27/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4800000.00 reads per min processed...  
 4285714.29 reads per min processed...  
 4500000.00 reads per min processed...  
 4200000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3857142.86 reads per min processed...  
 4000000.00 reads per min processed...  
 3882352.94 reads per min processed...  
 3789473.68 reads per min processed...  
 3714285.71 reads per min processed...  
 3652173.91 reads per min processed...  
 3750000.00 reads per min processed...  
 3555555.56 reads per min processed...  
 3517241.38 reads per min processed...  
 3483870.97 reads per min processed...  
 3454545.45 reads per min processed...  
 3428571.43 reads per min processed...  
 3405405.41 reads per min processed...  
 3384615.38 reads per min processed...  
 3365853.66 reads per min processed...  
 3348837.21 reads per min processed...  
 3409090.91 reads per min processed...  
 3391304.35 reads per min processed...  
 3446808.51 reads per min processed...  
 3428571.43 reads per min processed...  
 3411764.71 reads per min processed...  
 3461538.46 reads per min processed...  
 3509433.96 reads per min processed...  
 3555555.56 reads per min processed...  
 3600000.00 reads per min processed...  
 3642857.14 reads per min processed...  
 3620689.66 reads per min processed...  
 3600000.00 reads per min processed...  
 3580645.16 reads per min processed...  
 3619047.62 reads per min processed...  
 3600000.00 reads per min processed...  
 3582089.55 reads per min processed...  
 3617647.06 reads per min processed...  
 3600000.00 reads per min processed...  
 3583333.33 reads per min processed...  
 3567567.57 reads per min processed...  
 3552631.58 reads per min processed...  
 3584415.58 reads per min processed...  
 3569620.25 reads per min processed...  
 3555555.56 reads per min processed...  
 3542168.67 reads per min processed...  
 3571428.57 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.0ieyki3J3l/659_bGc-T1-TRNA-1_B23WHTKLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -193441.133010
EM: Round [1] log likelihood: -193341.245178
EM: Round [2] log likelihood: -193305.357693
EM: Round [3] log likelihood: -193288.263788
EM: Round [4] log likelihood: -193279.072936
EM: Round [5] log likelihood: -193273.792033
EM: Round [6] log likelihood: -193270.598900
EM: Round [7] log likelihood: -193268.571194
EM: Round [8] log likelihood: -193267.219414
EM: Round [9] log likelihood: -193266.275395
EM: Round [10] log likelihood: -193265.587551
EM: Round [11] log likelihood: -193265.067254
EM: Round [12] log likelihood: -193264.660825
EM: Round [13] log likelihood: -193264.334569
EM: Round [14] log likelihood: -193264.066593
EM: Round [15] log likelihood: -193263.842197
EM: Round [16] log likelihood: -193263.651213
EM: Round [17] log likelihood: -193263.486411
EM: Round [18] log likelihood: -193263.342524
EM: Round [19] log likelihood: -193263.215633
EM: Round [20] log likelihood: -193263.102765
EM: Round [21] log likelihood: -193263.001623
EM: Round [22] log likelihood: -193262.910406
EM: Round [23] log likelihood: -193262.827680
EM: Round [24] log likelihood: -193262.752291
EM: Round [25] log likelihood: -193262.683294
EM: Round [26] log likelihood: -193262.619910
EM: Round [27] log likelihood: -193262.561491
EM: Round [28] log likelihood: -193262.507488
EM: Round [29] log likelihood: -193262.457436
EM: Round [30] log likelihood: -193262.410937
EM: Round [31] log likelihood: -193262.367645
EM: Round [32] log likelihood: -193262.327262
EM: Round [33] log likelihood: -193262.289525
EM: Round [34] log likelihood: -193262.254204
EM: Round [35] log likelihood: -193262.221093
EM: Round [36] log likelihood: -193262.190012
EM: Round [37] log likelihood: -193262.160798
EM: Round [38] log likelihood: -193262.133306
EM: Round [39] log likelihood: -193262.107405
EM: Round [40] log likelihood: -193262.082976
EM: Round [41] log likelihood: -193262.059913
EM: Round [42] log likelihood: -193262.038119
EM: Round [43] log likelihood: -193262.017505
EM: Round [44] log likelihood: -193261.997990
EM: Round [45] log likelihood: -193261.979501
EM: Round [46] log likelihood: -193261.961970
EM: Round [47] log likelihood: -193261.945334
EM: Round [48] log likelihood: -193261.929538
EM: Round [49] log likelihood: -193261.914529
EM: Round [50] log likelihood: -193261.900257
EM: Round [51] log likelihood: -193261.886678
EM: Round [52] log likelihood: -193261.873752
EM: Round [53] log likelihood: -193261.861438
EM: Round [54] log likelihood: -193261.849703
EM: Round [55] log likelihood: -193261.838512
EM: Round [56] log likelihood: -193261.827836
EM: Round [57] log likelihood: -193261.817644
EM: Round [58] log likelihood: -193261.807912
EM: Round [59] log likelihood: -193261.798614
EM: Round [60] log likelihood: -193261.789727
EM: Round [61] log likelihood: -193261.781229
EM: Round [62] log likelihood: -193261.773100
EM: Round [63] log likelihood: -193261.765321
EM: Round [64] log likelihood: -193261.757874
EM: Round [65] log likelihood: -193261.750743
EM: Round [66] log likelihood: -193261.743911
EM: Round [67] log likelihood: -193261.737364
EM: Round [68] log likelihood: -193261.731089
EM: Round [69] log likelihood: -193261.725071
EM: Round [70] log likelihood: -193261.719300
EM: Round [71] log likelihood: -193261.713763
EM: Round [72] log likelihood: -193261.708449
EM: Round [73] log likelihood: -193261.703348
EM: Round [74] log likelihood: -193261.698450
EM: Round [75] log likelihood: -193261.693747
EM: Round [76] log likelihood: -193261.689228
EM: Round [77] log likelihood: -193261.684887
EM: Round [78] log likelihood: -193261.680715
EM: Round [79] log likelihood: -193261.676705
EM: Round [80] log likelihood: -193261.672849
EM: Round [81] log likelihood: -193261.669142
EM: Round [82] log likelihood: -193261.665576
EM: Round [83] log likelihood: -193261.662146
EM: Round [84] log likelihood: -193261.658846
EM: Round [85] log likelihood: -193261.655671
EM: Round [86] log likelihood: -193261.652615
EM: Round [87] log likelihood: -193261.649673
EM: Round [88] log likelihood: -193261.646841
EM: Round [89] log likelihood: -193261.644114
EM: Round [90] log likelihood: -193261.641488
EM: Round [91] log likelihood: -193261.638959
EM: Round [92] log likelihood: -193261.636523
EM: Round [93] log likelihood: -193261.634176
EM: Round [94] log likelihood: -193261.631915
EM: Round [95] log likelihood: -193261.629736
EM: Round [96] log likelihood: -193261.627636
EM: Round [97] log likelihood: -193261.625612
EM: Round [98] log likelihood: -193261.623661
EM: Round [99] log likelihood: -193261.621780
EM: Round [100] log likelihood: -193261.619966
EM: Round [101] log likelihood: -193261.618218
EM: Round [102] log likelihood: -193261.616532
EM: Round [103] log likelihood: -193261.614905
EM: Round [104] log likelihood: -193261.613337
EM: Round [105] log likelihood: -193261.611824
EM: Round [106] log likelihood: -193261.610364
EM: Round [107] log likelihood: -193261.608956
EM: Round [108] log likelihood: -193261.607597
EM: Round [109] log likelihood: -193261.606286
EM: Round [110] log likelihood: -193261.605021
EM: Round [111] log likelihood: -193261.603800
EM: Round [112] log likelihood: -193261.602622
EM: Round [113] log likelihood: -193261.601484
EM: Round [114] log likelihood: -193261.600386
EM: Round [115] log likelihood: -193261.599326
EM: Round [116] log likelihood: -193261.598303
EM: Round [117] log likelihood: -193261.597314
EM: Round [118] log likelihood: -193261.596360
EM: Round [119] log likelihood: -193261.595439
EM: Round [120] log likelihood: -193261.594549
EM: Round [121] log likelihood: -193261.593690
EM: Round [122] log likelihood: -193261.592860
EM: Round [123] log likelihood: -193261.592059
EM: Round [124] log likelihood: -193261.591284
EM: Round [125] log likelihood: -193261.590536
EM: Round [126] log likelihood: -193261.589814
EM: Round [127] log likelihood: -193261.589116
EM: Round [128] log likelihood: -193261.588441
EM: Round [129] log likelihood: -193261.587789
EM: Round [130] log likelihood: -193261.587160
EM: Round [131] log likelihood: -193261.586551
EM: Round [132] log likelihood: -193261.585963
EM: Round [133] log likelihood: -193261.585395
EM: Round [134] log likelihood: -193261.584846
EM: Round [135] log likelihood: -193261.584315
EM: Round [136] log likelihood: -193261.583802
EM: Round [137] log likelihood: -193261.583306
EM: Round [138] log likelihood: -193261.582826
EM: Round [139] log likelihood: -193261.582363
EM: Round [140] log likelihood: -193261.581915
EM: Round [141] log likelihood: -193261.581482
EM: Round [142] log likelihood: -193261.581063
EM: Round [143] log likelihood: -193261.580658
EM: Round [144] log likelihood: -193261.580266
EM: Round [145] log likelihood: -193261.579888
EM: Round [146] log likelihood: -193261.579522
EM: Round [147] log likelihood: -193261.579168
EM: Round [148] log likelihood: -193261.578825
EM: Round [149] log likelihood: -193261.578494
EM: Round [150] log likelihood: -193261.578174
EM: Round [151] log likelihood: -193261.577864
EM: Round [152] log likelihood: -193261.577565
EM: Round [153] log likelihood: -193261.577275
EM: Round [154] log likelihood: -193261.576995
EM: Round [155] log likelihood: -193261.576723
EM: Round [156] log likelihood: -193261.576461
EM: Round [157] log likelihood: -193261.576207
EM: Round [158] log likelihood: -193261.575962
EM: Round [159] log likelihood: -193261.575725
EM: Round [160] log likelihood: -193261.575495
EM: Round [161] log likelihood: -193261.575273
EM: Round [162] log likelihood: -193261.575057
EM: Round [163] log likelihood: -193261.574849
EM: Round [164] log likelihood: -193261.574648
EM: Round [165] log likelihood: -193261.574453
EM: Round [166] log likelihood: -193261.574265
EM: Round [167] log likelihood: -193261.574082
EM: Round [168] log likelihood: -193261.573905
EM: Round [169] log likelihood: -193261.573735
EM: Round [170] log likelihood: -193261.573569
EM: Round [171] log likelihood: -193261.573409
EM: Round [172] log likelihood: -193261.573254
EM: Round [173] log likelihood: -193261.573104
EM: Round [174] log likelihood: -193261.572959
EM: Round [175] log likelihood: -193261.572819
EM: Round [176] log likelihood: -193261.572683
EM: Round [177] log likelihood: -193261.572551
EM: Round [178] log likelihood: -193261.572424
EM: Round [179] log likelihood: -193261.572300
EM: Round [180] log likelihood: -193261.572181
EM: Round [181] log likelihood: -193261.572065
EM: Round [182] log likelihood: -193261.571953
EM: Round [183] log likelihood: -193261.571845
EM: Round [184] log likelihood: -193261.571740
EM: Round [185] log likelihood: -193261.571638
EM: Round [186] log likelihood: -193261.571540
EM: Stopping iterations at round 186 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -193093.473434
EM: Round [1] log likelihood: -193009.586194
EM: Round [2] log likelihood: -192979.983284
EM: Round [3] log likelihood: -192966.254784
EM: Round [4] log likelihood: -192959.054884
EM: Round [5] log likelihood: -192954.994498
EM: Round [6] log likelihood: -192952.575913
EM: Round [7] log likelihood: -192951.062034
EM: Round [8] log likelihood: -192950.067921
EM: Round [9] log likelihood: -192949.384448
EM: Round [10] log likelihood: -192948.894103
EM: Round [11] log likelihood: -192948.528629
EM: Round [12] log likelihood: -192948.247014
EM: Round [13] log likelihood: -192948.023759
EM: Round [14] log likelihood: -192947.842459
EM: Round [15] log likelihood: -192947.692217
EM: Round [16] log likelihood: -192947.565563
EM: Round [17] log likelihood: -192947.457237
EM: Round [18] log likelihood: -192947.363439
EM: Round [19] log likelihood: -192947.281359
EM: Round [20] log likelihood: -192947.208880
EM: Round [21] log likelihood: -192947.144377
EM: Round [22] log likelihood: -192947.086580
EM: Round [23] log likelihood: -192947.034484
EM: Round [24] log likelihood: -192946.987283
EM: Round [25] log likelihood: -192946.944320
EM: Round [26] log likelihood: -192946.905056
EM: Round [27] log likelihood: -192946.869042
EM: Round [28] log likelihood: -192946.835901
EM: Round [29] log likelihood: -192946.805315
EM: Round [30] log likelihood: -192946.777013
EM: Round [31] log likelihood: -192946.750759
EM: Round [32] log likelihood: -192946.726351
EM: Round [33] log likelihood: -192946.703612
EM: Round [34] log likelihood: -192946.682389
EM: Round [35] log likelihood: -192946.662544
EM: Round [36] log likelihood: -192946.643958
EM: Round [37] log likelihood: -192946.626523
EM: Round [38] log likelihood: -192946.610143
EM: Round [39] log likelihood: -192946.594734
EM: Round [40] log likelihood: -192946.580218
EM: Round [41] log likelihood: -192946.566527
EM: Round [42] log likelihood: -192946.553598
EM: Round [43] log likelihood: -192946.541375
EM: Round [44] log likelihood: -192946.529806
EM: Round [45] log likelihood: -192946.518846
EM: Round [46] log likelihood: -192946.508452
EM: Round [47] log likelihood: -192946.498584
EM: Round [48] log likelihood: -192946.489209
EM: Round [49] log likelihood: -192946.480293
EM: Round [50] log likelihood: -192946.471807
EM: Round [51] log likelihood: -192946.463724
EM: Round [52] log likelihood: -192946.456018
EM: Round [53] log likelihood: -192946.448667
EM: Round [54] log likelihood: -192946.441649
EM: Round [55] log likelihood: -192946.434945
EM: Round [56] log likelihood: -192946.428536
EM: Round [57] log likelihood: -192946.422405
EM: Round [58] log likelihood: -192946.416538
EM: Round [59] log likelihood: -192946.410919
EM: Round [60] log likelihood: -192946.405536
EM: Round [61] log likelihood: -192946.400375
EM: Round [62] log likelihood: -192946.395424
EM: Round [63] log likelihood: -192946.390674
EM: Round [64] log likelihood: -192946.386114
EM: Round [65] log likelihood: -192946.381733
EM: Round [66] log likelihood: -192946.377525
EM: Round [67] log likelihood: -192946.373479
EM: Round [68] log likelihood: -192946.369589
EM: Round [69] log likelihood: -192946.365847
EM: Round [70] log likelihood: -192946.362246
EM: Round [71] log likelihood: -192946.358780
EM: Round [72] log likelihood: -192946.355442
EM: Round [73] log likelihood: -192946.352227
EM: Round [74] log likelihood: -192946.349129
EM: Round [75] log likelihood: -192946.346144
EM: Round [76] log likelihood: -192946.343266
EM: Round [77] log likelihood: -192946.340492
EM: Round [78] log likelihood: -192946.337815
EM: Round [79] log likelihood: -192946.335234
EM: Round [80] log likelihood: -192946.332743
EM: Round [81] log likelihood: -192946.330338
EM: Round [82] log likelihood: -192946.328018
EM: Round [83] log likelihood: -192946.325777
EM: Round [84] log likelihood: -192946.323613
EM: Round [85] log likelihood: -192946.321524
EM: Round [86] log likelihood: -192946.319505
EM: Round [87] log likelihood: -192946.317555
EM: Round [88] log likelihood: -192946.315670
EM: Round [89] log likelihood: -192946.313849
EM: Round [90] log likelihood: -192946.312089
EM: Round [91] log likelihood: -192946.310387
EM: Round [92] log likelihood: -192946.308742
EM: Round [93] log likelihood: -192946.307151
EM: Round [94] log likelihood: -192946.305612
EM: Round [95] log likelihood: -192946.304124
EM: Round [96] log likelihood: -192946.302685
EM: Round [97] log likelihood: -192946.301293
EM: Round [98] log likelihood: -192946.299946
EM: Round [99] log likelihood: -192946.298643
EM: Round [100] log likelihood: -192946.297382
EM: Round [101] log likelihood: -192946.296162
EM: Round [102] log likelihood: -192946.294981
EM: Round [103] log likelihood: -192946.293838
EM: Round [104] log likelihood: -192946.292731
EM: Round [105] log likelihood: -192946.291660
EM: Round [106] log likelihood: -192946.290623
EM: Round [107] log likelihood: -192946.289619
EM: Round [108] log likelihood: -192946.288647
EM: Round [109] log likelihood: -192946.287706
EM: Round [110] log likelihood: -192946.286795
EM: Round [111] log likelihood: -192946.285912
EM: Round [112] log likelihood: -192946.285058
EM: Round [113] log likelihood: -192946.284230
EM: Round [114] log likelihood: -192946.283428
EM: Round [115] log likelihood: -192946.282652
EM: Round [116] log likelihood: -192946.281899
EM: Round [117] log likelihood: -192946.281171
EM: Round [118] log likelihood: -192946.280465
EM: Round [119] log likelihood: -192946.279781
EM: Round [120] log likelihood: -192946.279118
EM: Round [121] log likelihood: -192946.278476
EM: Round [122] log likelihood: -192946.277854
EM: Round [123] log likelihood: -192946.277252
EM: Round [124] log likelihood: -192946.276668
EM: Round [125] log likelihood: -192946.276102
EM: Round [126] log likelihood: -192946.275554
EM: Round [127] log likelihood: -192946.275022
EM: Round [128] log likelihood: -192946.274508
EM: Round [129] log likelihood: -192946.274009
EM: Round [130] log likelihood: -192946.273525
EM: Round [131] log likelihood: -192946.273056
EM: Round [132] log likelihood: -192946.272602
EM: Round [133] log likelihood: -192946.272162
EM: Round [134] log likelihood: -192946.271735
EM: Round [135] log likelihood: -192946.271321
EM: Round [136] log likelihood: -192946.270920
EM: Round [137] log likelihood: -192946.270532
EM: Round [138] log likelihood: -192946.270155
EM: Round [139] log likelihood: -192946.269790
EM: Round [140] log likelihood: -192946.269436
EM: Round [141] log likelihood: -192946.269093
EM: Round [142] log likelihood: -192946.268760
EM: Round [143] log likelihood: -192946.268437
EM: Round [144] log likelihood: -192946.268125
EM: Round [145] log likelihood: -192946.267822
EM: Round [146] log likelihood: -192946.267528
EM: Round [147] log likelihood: -192946.267243
EM: Round [148] log likelihood: -192946.266967
EM: Round [149] log likelihood: -192946.266699
EM: Round [150] log likelihood: -192946.266439
EM: Round [151] log likelihood: -192946.266187
EM: Round [152] log likelihood: -192946.265943
EM: Round [153] log likelihood: -192946.265707
EM: Round [154] log likelihood: -192946.265477
EM: Round [155] log likelihood: -192946.265255
EM: Round [156] log likelihood: -192946.265039
EM: Round [157] log likelihood: -192946.264830
EM: Round [158] log likelihood: -192946.264627
EM: Round [159] log likelihood: -192946.264430
EM: Round [160] log likelihood: -192946.264239
EM: Round [161] log likelihood: -192946.264054
EM: Round [162] log likelihood: -192946.263875
EM: Round [163] log likelihood: -192946.263701
EM: Round [164] log likelihood: -192946.263533
EM: Round [165] log likelihood: -192946.263369
EM: Round [166] log likelihood: -192946.263210
EM: Round [167] log likelihood: -192946.263057
EM: Round [168] log likelihood: -192946.262908
EM: Round [169] log likelihood: -192946.262763
EM: Round [170] log likelihood: -192946.262623
EM: Round [171] log likelihood: -192946.262487
EM: Round [172] log likelihood: -192946.262355
EM: Round [173] log likelihood: -192946.262227
EM: Round [174] log likelihood: -192946.262103
EM: Round [175] log likelihood: -192946.261983
EM: Round [176] log likelihood: -192946.261866
EM: Round [177] log likelihood: -192946.261753
EM: Round [178] log likelihood: -192946.261643
EM: Round [179] log likelihood: -192946.261537
EM: Round [180] log likelihood: -192946.261433
EM: Round [181] log likelihood: -192946.261333
EM: Round [182] log likelihood: -192946.261236
EM: Stopping iterations at round 182 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 190989666 > /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir > /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir --annotate /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir
-done, see /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 2029, filtered: 10349)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.0ieyki3J3l/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.0ieyki3J3l/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000224533.4]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000203413.3]
WARNING, no entry stored in dbm for [ENSG00000244479.7]
WARNING, no entry stored in dbm for [ENSG00000204959.4]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000261143.1]
WARNING, no entry stored in dbm for [ENSG00000229930.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000128438.10]
WARNING, no entry stored in dbm for [ENSG00000280195.1]
WARNING, no entry stored in dbm for [ENSG00000236741.4]
WARNING, no entry stored in dbm for [ENSG00000270571.2]
WARNING, no entry stored in dbm for [ENSG00000228546.2]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000236051.7]
WARNING, no entry stored in dbm for [ENSG00000236833.1]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000230023.2]
WARNING, no entry stored in dbm for [ENSG00000248238.2]
WARNING, no entry stored in dbm for [ENSG00000257906.3]
WARNING, no entry stored in dbm for [ENSG00000254101.7]
WARNING, no entry stored in dbm for [ENSG00000279579.3]
WARNING, no entry stored in dbm for [ENSG00000203356.2]
WARNING, no entry stored in dbm for [ENSG00000224699.9]
WARNING, no entry stored in dbm for [ENSG00000239569.3]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000244701.1]
WARNING, no entry stored in dbm for [ENSG00000258656.1]
WARNING, no entry stored in dbm for [ENSG00000214195.4]
WARNING, no entry stored in dbm for [ENSG00000277425.1]
WARNING, no entry stored in dbm for [ENSG00000226310.1]
WARNING, no entry stored in dbm for [ENSG00000215022.7]
WARNING, no entry stored in dbm for [ENSG00000285062.1]
WARNING, no entry stored in dbm for [ENSG00000223779.6]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000251616.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000287858.1]
WARNING, no entry stored in dbm for [ENSG00000276548.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000259380.6]
WARNING, no entry stored in dbm for [ENSG00000219665.8]
WARNING, no entry stored in dbm for [ENSG00000254363.6]
WARNING, no entry stored in dbm for [ENSG00000196566.2]
WARNING, no entry stored in dbm for [ENSG00000285954.1]
WARNING, no entry stored in dbm for [ENSG00000223403.6]
WARNING, no entry stored in dbm for [ENSG00000223470.3]
WARNING, no entry stored in dbm for [ENSG00000236869.1]
WARNING, no entry stored in dbm for [ENSG00000111788.10]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000279927.1]
WARNING, no entry stored in dbm for [ENSG00000262445.3]
WARNING, no entry stored in dbm for [ENSG00000185596.16]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000214976.2]
WARNING, no entry stored in dbm for [ENSG00000254205.1]
WARNING, no entry stored in dbm for [ENSG00000213862.4]
WARNING, no entry stored in dbm for [ENSG00000127957.18]
WARNING, no entry stored in dbm for [ENSG00000197320.5]
WARNING, no entry stored in dbm for [ENSG00000237298.10]
WARNING, no entry stored in dbm for [ENSG00000225574.1]
WARNING, no entry stored in dbm for [ENSG00000235782.1]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000184106.8]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000212694.8]
WARNING, no entry stored in dbm for [ENSG00000288028.1]
WARNING, no entry stored in dbm for [ENSG00000241163.8]
WARNING, no entry stored in dbm for [ENSG00000225401.2]
WARNING, no entry stored in dbm for [ENSG00000263327.6]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000231367.6]
WARNING, no entry stored in dbm for [ENSG00000271461.1]
WARNING, no entry stored in dbm for [ENSG00000254607.2]
WARNING, no entry stored in dbm for [ENSG00000249700.9]
WARNING, no entry stored in dbm for [ENSG00000261183.5]
WARNING, no entry stored in dbm for [ENSG00000234663.7]
WARNING, no entry stored in dbm for [ENSG00000279584.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000276721.1]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000280441.3]
WARNING, no entry stored in dbm for [ENSG00000175061.18]
WARNING, no entry stored in dbm for [ENSG00000258186.2]
WARNING, no entry stored in dbm for [ENSG00000279583.1]
WARNING, no entry stored in dbm for [ENSG00000260727.2]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000285051.2]
WARNING, no entry stored in dbm for [ENSG00000231240.1]
WARNING, no entry stored in dbm for [ENSG00000269609.6]
WARNING, no entry stored in dbm for [ENSG00000270195.2]
WARNING, no entry stored in dbm for [ENSG00000223908.5]
WARNING, no entry stored in dbm for [ENSG00000283709.1]
WARNING, no entry stored in dbm for [ENSG00000260805.2]
WARNING, no entry stored in dbm for [ENSG00000224184.6]
WARNING, no entry stored in dbm for [ENSG00000215067.10]
WARNING, no entry stored in dbm for [ENSG00000270330.1]
WARNING, no entry stored in dbm for [ENSG00000234297.2]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000281501.1]
WARNING, no entry stored in dbm for [ENSG00000175611.12]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000237294.1]
WARNING, no entry stored in dbm for [ENSG00000232965.1]
WARNING, no entry stored in dbm for [ENSG00000237478.2]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000256035.1]
WARNING, no entry stored in dbm for [ENSG00000207260.1]
WARNING, no entry stored in dbm for [ENSG00000206975.1]
WARNING, no entry stored in dbm for [ENSG00000200795.1]
WARNING, no entry stored in dbm for [ENSG00000224318.6]
WARNING, no entry stored in dbm for [ENSG00000239899.3]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000225944.1]
WARNING, no entry stored in dbm for [ENSG00000236948.2]
WARNING, no entry stored in dbm for [ENSG00000254109.6]
WARNING, no entry stored in dbm for [ENSG00000278147.1]
WARNING, no entry stored in dbm for [ENSG00000285230.2]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000179571.10]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000226419.8]
WARNING, no entry stored in dbm for [ENSG00000257557.2]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000248441.7]
WARNING, no entry stored in dbm for [ENSG00000217094.2]
WARNING, no entry stored in dbm for [ENSG00000205578.6]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000237094.12]
WARNING, no entry stored in dbm for [ENSG00000239906.1]
WARNING, no entry stored in dbm for [ENSG00000279738.1]
WARNING, no entry stored in dbm for [ENSG00000228999.4]
WARNING, no entry stored in dbm for [ENSG00000228759.1]
WARNING, no entry stored in dbm for [ENSG00000161103.11]
WARNING, no entry stored in dbm for [ENSG00000273851.1]
WARNING, no entry stored in dbm for [ENSG00000224429.8]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000250562.1]
WARNING, no entry stored in dbm for [ENSG00000245750.10]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000233621.2]
WARNING, no entry stored in dbm for [ENSG00000277053.4]
WARNING, no entry stored in dbm for [ENSG00000247774.7]
WARNING, no entry stored in dbm for [ENSG00000279208.1]
WARNING, no entry stored in dbm for [ENSG00000224881.1]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000288694.1]
WARNING, no entry stored in dbm for [ENSG00000223891.6]
WARNING, no entry stored in dbm for [ENSG00000232490.6]
WARNING, no entry stored in dbm for [ENSG00000258853.1]
WARNING, no entry stored in dbm for [ENSG00000258853.1]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000226015.2]
WARNING, no entry stored in dbm for [ENSG00000149531.15]
WARNING, no entry stored in dbm for [ENSG00000229415.10]
WARNING, no entry stored in dbm for [ENSG00000249171.1]
WARNING, no entry stored in dbm for [ENSG00000281649.2]
WARNING, no entry stored in dbm for [ENSG00000214544.7]
WARNING, no entry stored in dbm for [ENSG00000228526.7]
WARNING, no entry stored in dbm for [ENSG00000206593.1]
WARNING, no entry stored in dbm for [ENSG00000205583.13]
WARNING, no entry stored in dbm for [ENSG00000228065.11]
WARNING, no entry stored in dbm for [ENSG00000224020.1]
WARNING, no entry stored in dbm for [ENSG00000279738.1]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000228109.1]
WARNING, no entry stored in dbm for [ENSG00000286618.1]
WARNING, no entry stored in dbm for [ENSG00000287826.1]
WARNING, no entry stored in dbm for [ENSG00000286045.1]
WARNING, no entry stored in dbm for [ENSG00000235890.2]
WARNING, no entry stored in dbm for [ENSG00000234145.1]
WARNING, no entry stored in dbm for [ENSG00000237943.7]
WARNING, no entry stored in dbm for [ENSG00000093100.13]
WARNING, no entry stored in dbm for [ENSG00000214553.10]
WARNING, no entry stored in dbm for [ENSG00000247675.7]
WARNING, no entry stored in dbm for [ENSG00000218418.2]
WARNING, no entry stored in dbm for [ENSG00000231246.2]
WARNING, no entry stored in dbm for [ENSG00000175779.4]
WARNING, no entry stored in dbm for [ENSG00000251129.2]
WARNING, no entry stored in dbm for [ENSG00000275294.4]
WARNING, no entry stored in dbm for [ENSG00000261122.6]
WARNING, no entry stored in dbm for [ENSG00000220804.8]
WARNING, no entry stored in dbm for [ENSG00000227403.2]
WARNING, no entry stored in dbm for [ENSG00000279579.3]
WARNING, no entry stored in dbm for [ENSG00000281912.1]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000246662.6]
WARNING, no entry stored in dbm for [ENSG00000227036.8]
WARNING, no entry stored in dbm for [ENSG00000153363.13]
WARNING, no entry stored in dbm for [ENSG00000224209.8]
WARNING, no entry stored in dbm for [ENSG00000229437.2]
WARNING, no entry stored in dbm for [ENSG00000231028.9]
WARNING, no entry stored in dbm for [ENSG00000245148.2]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000200434.1]
WARNING, no entry stored in dbm for [ENSG00000229320.3]
WARNING, no entry stored in dbm for [ENSG00000228309.7]
WARNING, no entry stored in dbm for [ENSG00000239715.1]
WARNING, no entry stored in dbm for [ENSG00000269937.1]
WARNING, no entry stored in dbm for [ENSG00000241860.7]
WARNING, no entry stored in dbm for [ENSG00000268879.1]
WARNING, no entry stored in dbm for [ENSG00000258804.1]
WARNING, no entry stored in dbm for [ENSG00000229931.1]
WARNING, no entry stored in dbm for [ENSG00000283122.1]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000185485.14]
WARNING, no entry stored in dbm for [ENSG00000235499.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000231711.2]
WARNING, no entry stored in dbm for [ENSG00000206341.7]
WARNING, no entry stored in dbm for [ENSG00000206341.7]
WARNING, no entry stored in dbm for [ENSG00000206341.7]
WARNING, no entry stored in dbm for [ENSG00000196301.3]
WARNING, no entry stored in dbm for [ENSG00000276509.1]
WARNING, no entry stored in dbm for [ENSG00000260644.6]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000267555.1]
WARNING, no entry stored in dbm for [ENSG00000255295.1]
WARNING, no entry stored in dbm for [ENSG00000220875.1]
WARNING, no entry stored in dbm for [ENSG00000265541.1]
WARNING, no entry stored in dbm for [ENSG00000237224.4]
WARNING, no entry stored in dbm for [ENSG00000241549.8]
WARNING, no entry stored in dbm for [ENSG00000232354.8]
WARNING, no entry stored in dbm for [ENSG00000228393.4]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000255769.7]
WARNING, no entry stored in dbm for [ENSG00000240489.1]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000286563.1]
WARNING, no entry stored in dbm for [ENSG00000236682.2]
WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000258240.6]
WARNING, no entry stored in dbm for [ENSG00000264765.1]
WARNING, no entry stored in dbm for [ENSG00000237238.3]
WARNING, no entry stored in dbm for [ENSG00000244879.8]
WARNING, no entry stored in dbm for [ENSG00000225022.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000279431.1]
WARNING, no entry stored in dbm for [ENSG00000237480.3]
WARNING, no entry stored in dbm for [ENSG00000279891.1]
WARNING, no entry stored in dbm for [ENSG00000224885.1]
WARNING, no entry stored in dbm for [ENSG00000204352.4]
WARNING, no entry stored in dbm for [ENSG00000259087.5]
WARNING, no entry stored in dbm for [ENSG00000244383.2]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000284195.1]
WARNING, no entry stored in dbm for [ENSG00000204603.7]
WARNING, no entry stored in dbm for [ENSG00000260121.1]
WARNING, no entry stored in dbm for [ENSG00000185684.15]
WARNING, no entry stored in dbm for [ENSG00000258778.2]
WARNING, no entry stored in dbm for [ENSG00000254285.3]
WARNING, no entry stored in dbm for [ENSG00000206120.11]
WARNING, no entry stored in dbm for [ENSG00000267506.5]
WARNING, no entry stored in dbm for [ENSG00000183929.7]
WARNING, no entry stored in dbm for [ENSG00000117242.7]
WARNING, no entry stored in dbm for [ENSG00000211459.2]
WARNING, no entry stored in dbm for [ENSG00000218175.2]
WARNING, no entry stored in dbm for [ENSG00000254101.7]
WARNING, no entry stored in dbm for [ENSG00000213888.3]
WARNING, no entry stored in dbm for [ENSG00000261963.3]
WARNING, no entry stored in dbm for [ENSG00000279660.1]
WARNING, no entry stored in dbm for [ENSG00000250858.1]
WARNING, no entry stored in dbm for [ENSG00000177337.8]
WARNING, no entry stored in dbm for [ENSG00000225588.2]
WARNING, no entry stored in dbm for [ENSG00000259280.1]
WARNING, no entry stored in dbm for [ENSG00000260148.1]
WARNING, no entry stored in dbm for [ENSG00000255220.1]
WARNING, no entry stored in dbm for [ENSG00000259134.7]
WARNING, no entry stored in dbm for [ENSG00000251553.1]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000236172.7]
WARNING, no entry stored in dbm for [ENSG00000286458.1]
WARNING, no entry stored in dbm for [ENSG00000220506.2]
WARNING, no entry stored in dbm for [ENSG00000230630.5]
WARNING, no entry stored in dbm for [ENSG00000259408.2]
WARNING, no entry stored in dbm for [ENSG00000286482.1]
WARNING, no entry stored in dbm for [ENSG00000224533.4]
WARNING, no entry stored in dbm for [ENSG00000225393.1]
WARNING, no entry stored in dbm for [ENSG00000201098.1]
WARNING, no entry stored in dbm for [ENSG00000243389.1]
WARNING, no entry stored in dbm for [ENSG00000214765.8]
WARNING, no entry stored in dbm for [ENSG00000227617.9]
WARNING, no entry stored in dbm for [ENSG00000237986.4]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000263667.3]
WARNING, no entry stored in dbm for [ENSG00000227676.4]
WARNING, no entry stored in dbm for [ENSG00000236404.10]
WARNING, no entry stored in dbm for [ENSG00000260372.7]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000229807.12]
WARNING, no entry stored in dbm for [ENSG00000239482.6]
WARNING, no entry stored in dbm for [ENSG00000188511.12]
WARNING, no entry stored in dbm for [ENSG00000285792.1]
WARNING, no entry stored in dbm for [ENSG00000226397.8]
WARNING, no entry stored in dbm for [ENSG00000254838.5]
WARNING, no entry stored in dbm for [ENSG00000253281.7]
WARNING, no entry stored in dbm for [ENSG00000286156.1]
WARNING, no entry stored in dbm for [ENSG00000282851.2]
WARNING, no entry stored in dbm for [ENSG00000280068.1]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000228834.1]
WARNING, no entry stored in dbm for [ENSG00000261286.1]
WARNING, no entry stored in dbm for [ENSG00000197595.4]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000231093.1]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000205853.12]
WARNING, no entry stored in dbm for [ENSG00000230359.5]
WARNING, no entry stored in dbm for [ENSG00000218896.1]
WARNING, no entry stored in dbm for [ENSG00000227521.2]
WARNING, no entry stored in dbm for [ENSG00000220418.1]
WARNING, no entry stored in dbm for [ENSG00000266373.1]
WARNING, no entry stored in dbm for [ENSG00000270449.1]
WARNING, no entry stored in dbm for [ENSG00000225739.1]
WARNING, no entry stored in dbm for [ENSG00000255216.2]
WARNING, no entry stored in dbm for [ENSG00000247137.9]
WARNING, no entry stored in dbm for [ENSG00000247137.9]
WARNING, no entry stored in dbm for [ENSG00000284233.1]
WARNING, no entry stored in dbm for [ENSG00000269982.1]
WARNING, no entry stored in dbm for [ENSG00000273295.1]
WARNING, no entry stored in dbm for [ENSG00000231355.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000217482.2]
WARNING, no entry stored in dbm for [ENSG00000236375.3]
WARNING, no entry stored in dbm for [ENSG00000237636.3]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000230006.7]
WARNING, no entry stored in dbm for [ENSG00000186481.16]
WARNING, no entry stored in dbm for [ENSG00000287867.1]
WARNING, no entry stored in dbm for [ENSG00000215067.10]
WARNING, no entry stored in dbm for [ENSG00000286389.1]
WARNING, no entry stored in dbm for [ENSG00000245275.8]
WARNING, no entry stored in dbm for [ENSG00000273192.1]
WARNING, no entry stored in dbm for [ENSG00000218426.5]
WARNING, no entry stored in dbm for [ENSG00000266891.1]
WARNING, no entry stored in dbm for [ENSG00000219867.1]
WARNING, no entry stored in dbm for [ENSG00000233825.1]
WARNING, no entry stored in dbm for [ENSG00000279239.1]
WARNING, no entry stored in dbm for [ENSG00000235749.3]
WARNING, no entry stored in dbm for [ENSG00000284882.1]
WARNING, no entry stored in dbm for [ENSG00000282772.1]
WARNING, no entry stored in dbm for [ENSG00000288586.1]
WARNING, no entry stored in dbm for [ENSG00000279124.1]
WARNING, no entry stored in dbm for [ENSG00000248503.2]
WARNING, no entry stored in dbm for [ENSG00000246203.2]
WARNING, no entry stored in dbm for [ENSG00000225032.5]
WARNING, no entry stored in dbm for [ENSG00000258504.2]
WARNING, no entry stored in dbm for [ENSG00000197670.6]
WARNING, no entry stored in dbm for [ENSG00000279286.2]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000286533.1]
WARNING, no entry stored in dbm for [ENSG00000280184.2]
WARNING, no entry stored in dbm for [ENSG00000262528.2]
WARNING, no entry stored in dbm for [ENSG00000229807.12]
WARNING, no entry stored in dbm for [ENSG00000272620.2]
WARNING, no entry stored in dbm for [ENSG00000241684.6]
WARNING, no entry stored in dbm for [ENSG00000255585.3]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000279796.1]
WARNING, no entry stored in dbm for [ENSG00000279047.4]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000275121.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000218227.3]
WARNING, no entry stored in dbm for [ENSG00000240424.2]
WARNING, no entry stored in dbm for [ENSG00000250999.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000283345.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000280020.1]
WARNING, no entry stored in dbm for [ENSG00000235421.1]
WARNING, no entry stored in dbm for [ENSG00000248376.2]
WARNING, no entry stored in dbm for [ENSG00000214773.1]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000272970.3]
WARNING, no entry stored in dbm for [ENSG00000259867.6]
WARNING, no entry stored in dbm for [ENSG00000250144.1]
WARNING, no entry stored in dbm for [ENSG00000233133.1]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000249741.2]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000268362.6]
WARNING, no entry stored in dbm for [ENSG00000124097.7]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000250869.2]
WARNING, no entry stored in dbm for [ENSG00000243181.2]
WARNING, no entry stored in dbm for [ENSG00000267801.1]
WARNING, no entry stored in dbm for [ENSG00000115934.11]
WARNING, no entry stored in dbm for [ENSG00000255182.2]
WARNING, no entry stored in dbm for [ENSG00000224573.1]
WARNING, no entry stored in dbm for [ENSG00000286705.1]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000285606.1]
WARNING, no entry stored in dbm for [ENSG00000253899.1]
WARNING, no entry stored in dbm for [ENSG00000227902.2]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000258168.6]
WARNING, no entry stored in dbm for [ENSG00000259563.1]
WARNING, no entry stored in dbm for [ENSG00000215068.8]
WARNING, no entry stored in dbm for [ENSG00000248515.2]
WARNING, no entry stored in dbm for [ENSG00000240669.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000269886.1]
WARNING, no entry stored in dbm for [ENSG00000269886.1]
WARNING, no entry stored in dbm for [ENSG00000235357.2]
WARNING, no entry stored in dbm for [ENSG00000224722.3]
WARNING, no entry stored in dbm for [ENSG00000266573.6]
WARNING, no entry stored in dbm for [ENSG00000233862.7]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000267607.1]
WARNING, no entry stored in dbm for [ENSG00000243829.1]
WARNING, no entry stored in dbm for [ENSG00000268583.2]
WARNING, no entry stored in dbm for [ENSG00000235522.6]
WARNING, no entry stored in dbm for [ENSG00000276663.1]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000279583.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000173357.12]
WARNING, no entry stored in dbm for [ENSG00000233565.1]
WARNING, no entry stored in dbm for [ENSG00000241112.1]
WARNING, no entry stored in dbm for [ENSG00000256139.2]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000278959.1]
WARNING, no entry stored in dbm for [ENSG00000268460.2]
WARNING, no entry stored in dbm for [ENSG00000267469.1]
WARNING, no entry stored in dbm for [ENSG00000204990.3]
WARNING, no entry stored in dbm for [ENSG00000204990.3]
WARNING, no entry stored in dbm for [ENSG00000204990.3]
WARNING, no entry stored in dbm for [ENSG00000279726.2]
WARNING, no entry stored in dbm for [ENSG00000267623.3]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000243554.1]
WARNING, no entry stored in dbm for [ENSG00000287574.1]
WARNING, no entry stored in dbm for [ENSG00000282840.1]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000203875.13]
WARNING, no entry stored in dbm for [ENSG00000279159.1]
WARNING, no entry stored in dbm for [ENSG00000261303.6]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000251595.7]


	* STAR-Fusion complete.  See output: /tmp/nxf.0ieyki3J3l/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)