Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/75c67cbabe686568cf36118f80926b/659_c95-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/f49418b242b9e28715aaafaf88e31d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/f49418b242b9e28715aaafaf88e31d/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 590000000 records
paired = 293263054
unpaired = 4221039
MERGED PAIRED END READS = 293263054
MATES PROCESSED = 590747147
TOTAL READS     = 297484093
DISTINCT READS  = 1.0321e+08
DISTINCT COUNTS = 1103
MAX COUNT       = 751694
COUNTS OF 1     = 3.95982e+07
MAX TERMS       = 100
OBSERVED COUNTS (751695)
1	39598218
2	24285729
3	15049527
4	9055827
5	5386793
6	3229090
7	1973484
8	1242258
9	809744
10	547768
11	383456
12	277284
13	207790
14	159549
15	124992
16	101364
17	82656
18	69088
19	57709
20	49294
21	42868
22	37474
23	32653
24	28665
25	25539
26	22978
27	20582
28	18706
29	16618
30	15196
31	13827
32	12592
33	11621
34	10655
35	10026
36	9286
37	8610
38	7822
39	7450
40	6836
41	6545
42	6046
43	5805
44	5308
45	5121
46	4707
47	4579
48	4219
49	4000
50	3880
51	3610
52	3381
53	3231
54	3149
55	2957
56	2832
57	2645
58	2583
59	2453
60	2291
61	2175
62	2269
63	2057
64	1955
65	1854
66	1831
67	1797
68	1674
69	1630
70	1518
71	1473
72	1445
73	1404
74	1322
75	1278
76	1263
77	1247
78	1168
79	1144
80	1040
81	1041
82	1002
83	925
84	949
85	938
86	907
87	875
88	887
89	780
90	735
91	758
92	707
93	712
94	705
95	686
96	686
97	638
98	606
99	601
100	568
101	631
102	562
103	524
104	521
105	487
106	515
107	498
108	502
109	499
110	444
111	443
112	449
113	416
114	418
115	415
116	386
117	410
118	331
119	336
120	380
121	355
122	329
123	336
124	333
125	338
126	292
127	288
128	295
129	292
130	308
131	278
132	253
133	258
134	270
135	271
136	262
137	245
138	235
139	230
140	220
141	239
142	225
143	208
144	226
145	223
146	231
147	199
148	194
149	226
150	208
151	173
152	180
153	169
154	158
155	164
156	178
157	172
158	162
159	160
160	159
161	182
162	166
163	174
164	146
165	146
166	127
167	130
168	147
169	133
170	121
171	107
172	135
173	139
174	122
175	108
176	127
177	121
178	124
179	142
180	120
181	120
182	109
183	112
184	118
185	109
186	111
187	94
188	89
189	103
190	94
191	94
192	97
193	90
194	83
195	100
196	95
197	101
198	98
199	84
200	96
201	84
202	88
203	82
204	59
205	69
206	82
207	75
208	75
209	74
210	69
211	62
212	65
213	61
214	66
215	66
216	88
217	68
218	61
219	55
220	65
221	71
222	74
223	45
224	48
225	70
226	70
227	62
228	55
229	77
230	55
231	61
232	56
233	58
234	50
235	59
236	54
237	54
238	49
239	49
240	49
241	46
242	56
243	70
244	52
245	50
246	44
247	44
248	37
249	52
250	45
251	40
252	35
253	52
254	41
255	46
256	50
257	39
258	40
259	48
260	50
261	34
262	37
263	37
264	37
265	31
266	25
267	30
268	38
269	42
270	30
271	38
272	25
273	24
274	35
275	32
276	35
277	36
278	27
279	30
280	31
281	28
282	28
283	28
284	28
285	40
286	39
287	31
288	32
289	23
290	27
291	29
292	25
293	17
294	28
295	26
296	28
297	22
298	28
299	27
300	41
301	20
302	29
303	22
304	26
305	35
306	17
307	26
308	19
309	26
310	33
311	25
312	19
313	30
314	18
315	23
316	20
317	19
318	25
319	28
320	26
321	13
322	25
323	25
324	32
325	19
326	20
327	24
328	18
329	10
330	18
331	19
332	12
333	24
334	23
335	16
336	26
337	16
338	12
339	17
340	14
341	22
342	19
343	18
344	14
345	14
346	14
347	16
348	16
349	16
350	19
351	15
352	23
353	18
354	12
355	15
356	15
357	16
358	20
359	15
360	18
361	14
362	14
363	13
364	17
365	17
366	19
367	13
368	9
369	15
370	17
371	10
372	11
373	13
374	16
375	14
376	12
377	15
378	7
379	18
380	7
381	16
382	13
383	8
384	12
385	14
386	13
387	6
388	6
389	13
390	13
391	13
392	18
393	13
394	9
395	10
396	10
397	7
398	10
399	12
400	13
401	13
402	16
403	7
404	8
405	7
406	12
407	14
408	8
409	8
410	6
411	10
412	13
413	9
414	7
415	8
416	9
417	6
418	11
419	9
420	12
421	11
422	8
423	8
424	10
425	8
426	11
427	3
428	12
429	11
430	14
431	5
432	11
433	11
434	13
435	7
436	9
437	6
438	7
439	10
440	12
441	7
442	9
443	10
444	6
445	5
446	9
447	8
448	3
449	5
450	7
451	7
452	14
453	7
454	8
455	10
456	5
457	6
458	8
459	4
460	9
461	4
462	8
463	9
464	7
465	9
466	10
467	5
468	7
469	10
470	8
471	13
472	3
473	6
474	6
475	9
476	9
477	4
478	6
479	4
480	5
481	4
482	7
483	5
484	9
485	7
486	9
487	7
488	4
489	5
490	1
491	6
492	8
493	6
494	5
495	9
496	5
497	6
498	4
499	5
500	5
501	6
502	12
503	4
504	3
505	4
506	7
507	6
508	4
509	2
510	2
511	8
512	3
513	10
514	3
515	3
516	5
517	3
518	4
519	6
520	5
521	6
522	5
523	4
524	5
525	2
526	4
527	4
529	1
530	5
531	5
532	4
533	8
534	4
535	11
536	8
537	2
538	6
539	3
540	5
541	8
542	8
543	4
544	7
545	6
546	6
547	7
548	2
549	5
550	2
551	2
552	1
553	4
554	5
555	6
556	6
557	5
558	2
559	4
560	2
561	2
562	3
563	4
564	6
565	2
566	1
567	3
568	1
569	4
570	5
571	1
572	8
573	3
575	2
576	5
578	6
579	3
580	3
581	6
582	4
583	4
584	1
585	4
586	8
587	4
588	4
589	2
590	3
591	5
592	2
593	3
594	2
595	1
596	5
597	2
598	4
599	3
600	5
601	2
602	7
603	5
604	1
605	3
606	4
607	4
608	1
609	2
610	4
611	3
612	1
613	2
614	2
615	4
616	2
617	3
618	3
619	2
620	4
621	2
622	4
623	6
624	5
625	3
626	1
627	3
628	2
629	2
630	1
631	2
632	5
633	1
634	3
635	2
636	5
637	1
638	1
639	2
640	5
641	3
643	5
644	5
645	1
646	2
647	2
648	2
649	4
650	2
651	1
652	1
653	5
654	5
655	4
656	4
657	2
658	5
659	3
661	3
662	1
664	4
665	4
666	4
667	1
668	3
669	4
670	2
672	1
673	2
674	3
676	2
677	1
678	2
679	5
680	1
681	2
682	5
683	4
685	2
687	1
688	1
689	3
690	2
691	1
692	2
693	2
694	1
695	2
696	1
697	3
698	4
699	2
701	4
702	2
703	2
704	1
705	1
707	1
709	3
710	2
711	2
712	4
713	1
714	3
715	3
716	3
718	1
719	1
720	2
721	1
722	2
723	1
724	1
725	2
726	1
727	3
729	3
730	1
731	1
732	1
733	1
734	5
735	1
736	2
737	2
738	1
739	5
740	1
741	1
742	2
743	1
744	2
745	1
746	1
748	3
749	2
750	2
751	3
752	2
753	3
754	1
755	1
756	1
758	2
759	1
761	3
762	6
763	4
764	2
765	2
766	1
767	1
768	2
769	1
771	1
772	1
773	2
774	3
776	3
777	3
779	1
780	2
781	2
783	1
784	3
786	3
788	1
789	4
790	3
791	1
792	1
793	2
794	1
796	3
797	3
798	3
799	1
800	1
802	2
803	1
804	1
805	2
806	2
807	3
808	2
809	1
811	1
812	1
813	1
814	3
815	1
816	1
818	1
819	3
820	2
821	1
822	3
823	2
824	2
825	2
826	2
828	2
829	1
830	2
832	1
833	2
837	3
838	2
839	1
840	1
841	1
842	1
843	1
844	2
845	1
846	2
848	1
849	2
850	1
851	1
852	2
854	1
855	2
856	2
857	1
858	1
860	1
862	1
864	2
865	1
866	2
867	3
868	1
871	1
872	2
874	3
875	1
876	1
878	2
881	1
882	2
883	1
885	2
888	1
889	2
890	1
891	2
892	1
895	1
898	2
899	2
900	2
902	1
906	1
909	1
911	1
912	1
914	2
915	1
916	2
917	1
920	1
921	1
923	2
924	2
925	1
927	1
928	1
930	1
932	1
933	1
935	1
940	1
942	1
943	1
945	1
946	2
947	2
951	2
952	1
954	1
955	1
957	1
963	1
964	1
965	1
972	2
973	1
974	1
977	2
982	2
984	1
987	1
989	2
990	1
991	1
994	2
996	2
1000	1
1001	1
1004	1
1008	1
1010	2
1014	2
1016	2
1019	1
1021	1
1022	1
1023	1
1026	1
1030	1
1032	3
1034	1
1035	1
1049	1
1051	1
1052	1
1053	1
1054	1
1058	1
1061	1
1062	1
1064	2
1067	2
1068	1
1069	1
1071	1
1072	1
1074	1
1078	1
1079	1
1088	1
1090	1
1095	1
1099	1
1100	1
1102	1
1105	1
1108	1
1111	1
1112	1
1119	1
1122	1
1123	2
1131	1
1133	1
1136	3
1141	1
1144	3
1146	1
1151	1
1153	1
1154	1
1155	3
1172	1
1175	2
1179	1
1180	1
1184	1
1187	1
1192	1
1195	1
1196	1
1197	1
1198	1
1199	1
1201	1
1209	1
1217	2
1219	1
1221	1
1222	2
1225	1
1231	1
1235	1
1237	1
1242	1
1247	1
1249	1
1261	2
1262	1
1266	1
1269	3
1278	1
1279	3
1290	1
1295	1
1298	1
1300	1
1301	1
1304	1
1310	1
1314	1
1323	1
1332	1
1338	1
1346	1
1354	1
1365	1
1371	1
1372	1
1374	1
1379	1
1380	1
1384	1
1386	1
1391	1
1392	1
1398	1
1402	1
1404	1
1409	1
1414	1
1426	1
1427	1
1441	1
1447	1
1453	1
1460	1
1467	1
1471	1
1475	1
1476	1
1478	1
1486	1
1491	1
1497	1
1502	1
1507	1
1509	1
1522	1
1524	1
1525	1
1526	1
1559	1
1566	1
1577	1
1581	1
1589	1
1600	1
1610	1
1622	1
1638	1
1657	1
1667	1
1673	1
1674	1
1686	2
1689	1
1699	1
1703	1
1707	1
1716	1
1717	1
1724	1
1730	1
1735	1
1756	1
1818	1
1825	1
1842	1
1869	1
1889	1
1901	1
1940	1
1951	1
1953	1
1955	1
1981	1
2023	1
2024	1
2074	1
2097	1
2106	1
2211	1
2217	1
2222	1
2261	1
2285	1
2304	1
2362	1
2458	1
2568	1
2571	1
2603	1
2647	1
2688	1
2783	1
2822	1
2843	1
2909	1
3062	1
3064	1
3294	1
3308	1
3378	1
3591	1
3857	1
3863	1
5797	1
9921	1
10148	1
10281	1
11784	1
45236	1
751694	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................................................................
............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]