File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/bb54c7785bbb6ca72dbd70b700acb8/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:20:02Z thread 412 Sample sheet being processed by common lib? Yes
2026-06-08T06:20:02Z thread 412 SampleSheet Settings: 
2026-06-08T06:20:02Z thread 412   FastqCompressionFormat = gzip
2026-06-08T06:20:02Z thread 412   NoLaneSplitting = FALSE
2026-06-08T06:20:02Z thread 412   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:20:02Z thread 412   SoftwareVersion = 4.3.6
2026-06-08T06:20:02Z thread 412 
2026-06-08T06:20:02Z thread 412 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:20:02Z thread 412 shared-thread-linux-native-asio output is disabled
2026-06-08T06:20:02Z thread 412 bcl-convert Version 4.4.6
2026-06-08T06:20:02Z thread 412 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:20:02Z thread 412 Command Line: --tiles s_8 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:20:02Z thread 412 Conversion Begins.
2026-06-08T06:20:02Z thread 412 Input BCL Information:
2026-06-08T06:20:02Z thread 412     Read Structure: 2026-06-08T06:20:02Z thread 412 Y1512026-06-08T06:20:02Z thread 412 ;2026-06-08T06:20:02Z thread 412 I102026-06-08T06:20:02Z thread 412 ;2026-06-08T06:20:02Z thread 412 I102026-06-08T06:20:02Z thread 412 ;2026-06-08T06:20:02Z thread 412 Y1512026-06-08T06:20:02Z thread 412 
2026-06-08T06:20:02Z thread 412     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:20:02Z thread 412     BCL file format: cbcl
2026-06-08T06:20:02Z thread 412     Positions file format: slocs
2026-06-08T06:20:02Z thread 412     Filter file format: filter
2026-06-08T06:20:02Z thread 412 Conversion Information:
2026-06-08T06:20:02Z thread 412     Tile filtering: converting 784/6272 tiles
2026-06-08T06:20:02Z thread 412     Sample Count for Lane 1: 96
2026-06-08T06:20:02Z thread 412     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:02Z thread 412     Sample Count for Lane 2: 96
2026-06-08T06:20:02Z thread 412     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:02Z thread 412     Sample Count for Lane 3: 96
2026-06-08T06:20:03Z thread 412     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 412     Sample Count for Lane 4: 96
2026-06-08T06:20:03Z thread 412     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 412     Sample Count for Lane 5: 96
2026-06-08T06:20:03Z thread 412     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 412     Sample Count for Lane 6: 96
2026-06-08T06:20:03Z thread 412     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 412     Sample Count for Lane 7: 96
2026-06-08T06:20:03Z thread 412     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:20:03Z thread 412     Sample Count for Lane 8: 96
2026-06-08T06:20:03Z thread 412     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:20:03Z thread 412 # CPU hw threads available: 64
2026-06-08T06:20:03Z thread 412 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:20:03Z thread 412 SW compressors: 64
2026-06-08T06:20:03Z thread 412 SW decompressors: 32
2026-06-08T06:20:03Z thread 412 SW FASTQ compression level: 1
2026-06-08T07:01:02Z thread 412 Lane 8 Post-run Information:
2026-06-08T07:01:02Z thread 412     Total clusters: 3913431892
2026-06-08T07:01:02Z thread 412     Total Genomic Reads: 7826863784
2026-06-08T07:01:02Z thread 412     Total Genomic Input Gigabases 1181.86
2026-06-08T07:01:02Z thread 412     Minimum reads for a sample: 209160
2026-06-08T07:01:02Z thread 412     Maximum reads for a sample: 156482722
2026-06-08T07:01:02Z thread 412     Average reads per sample: 76373294.58
2026-06-08T07:01:02Z thread 412     Undetermined reads: 495027504
2026-06-08T07:01:04Z thread 412 Conversion Complete.