Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/5a7c9afd8065604dddf40e273448b5/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/5a7c9afd8065604dddf40e273448b5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/feccb489e98bf2145f5238d5ee9a8e/tih_rna_sample_00087_B23WHTKLT4_1.fusionreport.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/f9f6173a574bdcc82fe15de7663eee/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/f9f6173a574bdcc82fe15de7663eee/tih_rna_sample_00087_B23WHTKLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00087_B23WHTKLT4_1.fusionreport.tsv --gtf /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1 --shrink_introns --max_intron_length 1000 
Done.
Execution Time = 0.12 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl --fusions tih_rna_sample_00087_B23WHTKLT4_1.fusionreport.tsv --gtf /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_annot.gtf --genome_fa /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_genome.fa --out_prefix /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1 --shrink_introns --max_intron_length 1000 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/fusion_contigs.ok
Running: cp /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fa
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fa
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/cp_contigs_file_workdir
Running: cp /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/cp_gtf_file_workdir.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf > /tmp/nxf.25Ed2bCW7h/cytoBand.txt
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fasta_and_gtf_to_cytoband.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf > /tmp/nxf.25Ed2bCW7h/cytoBand.txt
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/cytoband.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed
-parsing GTF file: /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/gtf_gene_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/merged_contig_gtf_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.bed.bedsort.ok
Running: bgzip -f /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed.sorted.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.bed.bgzip.ok
Running: tabix -p bed /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.bed.sorted.bed.gz
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.bed.tabix.ok
Running: samtools faidx /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa
Execution Time = 0.00 minutes. CMD: samtools faidx /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/merged_contig_fai.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00087_B23WHTKLT4_1.star --out_dir /tmp/nxf.25Ed2bCW7h/fi_workdir --reads "/tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_2.fastp.fastq.gz"
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
Jun 08 10:16:37 ..... started STAR run
Jun 08 10:16:37 ..... loading genome
Jun 08 10:18:19 ... generating Suffix Array index
Jun 08 10:22:08 ... completed Suffix Array index
Jun 08 10:22:08 ..... processing annotations GTF
Jun 08 10:22:08 ..... inserting junctions into the genome indices
Jun 08 10:23:09 ..... started mapping
Jun 08 11:21:34 ..... finished mapping
Jun 08 11:21:35 ..... started sorting BAM
Jun 08 11:21:36 ..... finished successfully
* Running CMD: mv Aligned.sortedByCoord.out.bam tih_rna_sample_00087_B23WHTKLT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index tih_rna_sample_00087_B23WHTKLT4_1.star.sortedByCoord.out.bam
Execution Time = 65.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/run_FI_STAR.pl --genome /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir/ref_genome.fa --patch /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fa --max_mate_dist 100000 -G /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf --CPU 8 --out_prefix tih_rna_sample_00087_B23WHTKLT4_1.star --out_dir /tmp/nxf.25Ed2bCW7h/fi_workdir --reads "/tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_2.fastp.fastq.gz"
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/run_STAR.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
11:21:42 : INFO : Done.
Execution Time = 0.08 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/bam_mark_duplicates.py  -i /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.sortedByCoord.out.bam   -o /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam   --remove_dups 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/mark_dup_reads.ok
Running: samtools index /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam
Execution Time = 0.01 minutes. CMD: samtools index /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/mark_dups_reads.index.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
-parsing GTF file: /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf
-parsing /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam

[10000]   
[20000]   
[30000]   
[40000]   
[50000]   
[60000]   
[70000]   
[80000]   
[90000]   
[100000]   
[110000]   
[120000]   
[130000]   
[140000]   
[150000]   
[160000]   
[170000]   
[180000]   
[190000]   
[200000]   
[210000]   
[220000]   
[230000]   
[240000]   
[250000]   
[260000]   
[270000]   
[280000]   
[290000]   
[300000]   
[310000]   
[320000]   
[330000]   
[340000]   
[350000]   
[360000]   
[370000]   
[380000]   
[390000]   
[400000]   
[410000]   
[420000]   
[430000]   
[440000]   
[450000]   
[460000]   
[470000]   
[480000]   
[490000]   
[500000]   
[510000]   
[520000]   
[530000]   
[540000]   
[550000]   
[560000]   
[570000]   
[580000]   
[590000]   
[600000]   
[610000]   
[620000]   
[630000]   
[640000]   
[650000]   
[660000]   
[670000]   
[680000]   
[690000]   
[700000]   
[710000]   
[720000]   
[730000]   
[740000]   
[750000]   
[760000]   
[770000]   
[780000]   
[790000]   
[800000]   
[810000]   -done parsing /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'low complexity anchor region' => 3,
          'excessive soft clipping' => 6470,
          ' ** passed ** ' => 20970,
          'small anchor length' => 151,
          'num genes matched < 2' => 12,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 3,
          'exons hit < 2' => 3,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 6,
          'per_id < 96' => 4039,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 46,
          'seq-similar region overlap' => 4,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 114
        };
-writing fusion junction support info.
Execution Time = 0.44 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_JUNCTION_reads_from_fusion_contig_bam.pl --gtf_file /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/get_fusion_JUNCTION_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
-outputting the spanning read info: /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.
-fusion SPANNING read extraction for scaff: AC004923.1--AC127526.2

[1000]   
[2000]   -fusion SPANNING read extraction for scaff: AC009097.2--TAT

[1000]   -fusion SPANNING read extraction for scaff: AC016629.1--RPL23AP53

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: AC090572.2--CNBD1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: AC092807.3--DDAH1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   -fusion SPANNING read extraction for scaff: AL512590.2--CCDC180

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   -fusion SPANNING read extraction for scaff: AP006294.2--ENPP7P3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   -fusion SPANNING read extraction for scaff: B4GALT4--IGSF11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: C1QTNF7-AS1--LINC00504

[1000]   
[2000]   
[3000]   -fusion SPANNING read extraction for scaff: CCDC169--SOHLH2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   -fusion SPANNING read extraction for scaff: DNAAF4--CCPG1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   -fusion SPANNING read extraction for scaff: NPHP3--ACAD11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PMS2P6--CCDC146

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   -fusion SPANNING read extraction for scaff: STX16--NPEPL1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   
[65000]   
[66000]   
[67000]   
[68000]   
[69000]   
[70000]   
[71000]   
[72000]   
[73000]   
[74000]   
[75000]   
[76000]   
[77000]   
[78000]   
[79000]   
[80000]   
[81000]   
[82000]   
[83000]   
[84000]   
[85000]   
[86000]   
[87000]   
[88000]   
[89000]   
[90000]   
[91000]   
[92000]   
[93000]   
[94000]   
[95000]   
[96000]   
[97000]   
[98000]   
[99000]   
[100000]   
[101000]   
[102000]   
[103000]   
[104000]   
[105000]   
[106000]   
[107000]   
[108000]   
[109000]   
[110000]   
[111000]   
[112000]   
[113000]   
[114000]   
[115000]   
[116000]   
[117000]   
[118000]   
[119000]   
[120000]   
[121000]   
[122000]   
[123000]   
[124000]   
[125000]   
[126000]   
[127000]   
[128000]   
[129000]   
[130000]   -fusion SPANNING read extraction for scaff: THRAP3P2--SLCO3A1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   -fusion SPANNING read extraction for scaff: UPK1B--IGSF11
-filtered reads reasons: $VAR1 = {
          'lacks exon overlap' => 8927,
          'seq similar region alignment' => 11806
        };
Execution Time = 1.04 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_fusion_SPANNING_reads_from_bam.from_chim_summary.pl --gtf_file /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.gtf --MIN_ALIGN_PER_ID 96 --bam /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam --junction_info /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info --genome_lib_dir ctat_genome_lib_build_dir   > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/get_fusion_SPANNING_reads_from_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/coalesce_junction_and_spanning_info.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junction_info /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info 1  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/coalesce_junc_n_span.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj
EM: Starting log likelihood: -8523.165455
EM: Round [1] log likelihood: -8516.680139
EM: Round [2] log likelihood: -8516.653651
EM: Round [3] log likelihood: -8516.643255
EM: Round [4] log likelihood: -8516.632984
EM: Round [5] log likelihood: -8516.622810
EM: Round [6] log likelihood: -8516.612730
EM: Round [7] log likelihood: -8516.602743
EM: Round [8] log likelihood: -8516.592847
EM: Round [9] log likelihood: -8516.583041
EM: Round [10] log likelihood: -8516.573322
EM: Round [11] log likelihood: -8516.563690
EM: Round [12] log likelihood: -8516.554143
EM: Round [13] log likelihood: -8516.544679
EM: Round [14] log likelihood: -8516.535298
EM: Round [15] log likelihood: -8516.525997
EM: Round [16] log likelihood: -8516.516775
EM: Round [17] log likelihood: -8516.507631
EM: Round [18] log likelihood: -8516.498564
EM: Round [19] log likelihood: -8516.489573
EM: Round [20] log likelihood: -8516.480656
EM: Round [21] log likelihood: -8516.471811
EM: Round [22] log likelihood: -8516.463039
EM: Round [23] log likelihood: -8516.454338
EM: Round [24] log likelihood: -8516.445706
EM: Round [25] log likelihood: -8516.437143
EM: Round [26] log likelihood: -8516.428647
EM: Round [27] log likelihood: -8516.420218
EM: Round [28] log likelihood: -8516.411854
EM: Round [29] log likelihood: -8516.403555
EM: Round [30] log likelihood: -8516.395320
EM: Round [31] log likelihood: -8516.387147
EM: Round [32] log likelihood: -8516.379036
EM: Round [33] log likelihood: -8516.370985
EM: Round [34] log likelihood: -8516.362995
EM: Round [35] log likelihood: -8516.355064
EM: Round [36] log likelihood: -8516.347191
EM: Round [37] log likelihood: -8516.339376
EM: Round [38] log likelihood: -8516.331617
EM: Round [39] log likelihood: -8516.323914
EM: Round [40] log likelihood: -8516.316267
EM: Round [41] log likelihood: -8516.308673
EM: Round [42] log likelihood: -8516.301134
EM: Round [43] log likelihood: -8516.293647
EM: Round [44] log likelihood: -8516.286213
EM: Round [45] log likelihood: -8516.278830
EM: Round [46] log likelihood: -8516.271497
EM: Round [47] log likelihood: -8516.264216
EM: Round [48] log likelihood: -8516.256983
EM: Round [49] log likelihood: -8516.249800
EM: Round [50] log likelihood: -8516.242665
EM: Round [51] log likelihood: -8516.235577
EM: Round [52] log likelihood: -8516.228537
EM: Round [53] log likelihood: -8516.221543
EM: Round [54] log likelihood: -8516.214595
EM: Round [55] log likelihood: -8516.207692
EM: Round [56] log likelihood: -8516.200834
EM: Round [57] log likelihood: -8516.194020
EM: Round [58] log likelihood: -8516.187250
EM: Round [59] log likelihood: -8516.180524
EM: Round [60] log likelihood: -8516.173840
EM: Round [61] log likelihood: -8516.167198
EM: Round [62] log likelihood: -8516.160598
EM: Round [63] log likelihood: -8516.154039
EM: Round [64] log likelihood: -8516.147520
EM: Round [65] log likelihood: -8516.141042
EM: Round [66] log likelihood: -8516.134604
EM: Round [67] log likelihood: -8516.128205
EM: Round [68] log likelihood: -8516.121845
EM: Round [69] log likelihood: -8516.115523
EM: Round [70] log likelihood: -8516.109240
EM: Round [71] log likelihood: -8516.102994
EM: Round [72] log likelihood: -8516.096785
EM: Round [73] log likelihood: -8516.090613
EM: Round [74] log likelihood: -8516.084477
EM: Round [75] log likelihood: -8516.078377
EM: Round [76] log likelihood: -8516.072313
EM: Round [77] log likelihood: -8516.066284
EM: Round [78] log likelihood: -8516.060290
EM: Round [79] log likelihood: -8516.054331
EM: Round [80] log likelihood: -8516.048405
EM: Round [81] log likelihood: -8516.042514
EM: Round [82] log likelihood: -8516.036655
EM: Round [83] log likelihood: -8516.030830
EM: Round [84] log likelihood: -8516.025037
EM: Round [85] log likelihood: -8516.019277
EM: Round [86] log likelihood: -8516.013549
EM: Round [87] log likelihood: -8516.007852
EM: Round [88] log likelihood: -8516.002187
EM: Round [89] log likelihood: -8515.996553
EM: Round [90] log likelihood: -8515.990950
EM: Round [91] log likelihood: -8515.985378
EM: Round [92] log likelihood: -8515.979835
EM: Round [93] log likelihood: -8515.974322
EM: Round [94] log likelihood: -8515.968839
EM: Round [95] log likelihood: -8515.963386
EM: Round [96] log likelihood: -8515.957961
EM: Round [97] log likelihood: -8515.952565
EM: Round [98] log likelihood: -8515.947197
EM: Round [99] log likelihood: -8515.941858
EM: Round [100] log likelihood: -8515.936547
EM: Round [101] log likelihood: -8515.931263
EM: Round [102] log likelihood: -8515.926007
EM: Round [103] log likelihood: -8515.920778
EM: Round [104] log likelihood: -8515.915575
EM: Round [105] log likelihood: -8515.910400
EM: Round [106] log likelihood: -8515.905251
EM: Round [107] log likelihood: -8515.900128
EM: Round [108] log likelihood: -8515.895031
EM: Round [109] log likelihood: -8515.889959
EM: Round [110] log likelihood: -8515.884913
EM: Round [111] log likelihood: -8515.879893
EM: Round [112] log likelihood: -8515.874897
EM: Round [113] log likelihood: -8515.869926
EM: Round [114] log likelihood: -8515.864980
EM: Round [115] log likelihood: -8515.860058
EM: Round [116] log likelihood: -8515.855161
EM: Round [117] log likelihood: -8515.850287
EM: Round [118] log likelihood: -8515.845437
EM: Round [119] log likelihood: -8515.840611
EM: Round [120] log likelihood: -8515.835808
EM: Round [121] log likelihood: -8515.831028
EM: Round [122] log likelihood: -8515.826271
EM: Round [123] log likelihood: -8515.821536
EM: Round [124] log likelihood: -8515.816825
EM: Round [125] log likelihood: -8515.812135
EM: Round [126] log likelihood: -8515.807468
EM: Round [127] log likelihood: -8515.802823
EM: Round [128] log likelihood: -8515.798200
EM: Round [129] log likelihood: -8515.793598
EM: Round [130] log likelihood: -8515.789018
EM: Round [131] log likelihood: -8515.784459
EM: Round [132] log likelihood: -8515.779921
EM: Round [133] log likelihood: -8515.775404
EM: Round [134] log likelihood: -8515.770908
EM: Round [135] log likelihood: -8515.766433
EM: Round [136] log likelihood: -8515.761978
EM: Round [137] log likelihood: -8515.757543
EM: Round [138] log likelihood: -8515.753128
EM: Round [139] log likelihood: -8515.748734
EM: Round [140] log likelihood: -8515.744359
EM: Round [141] log likelihood: -8515.740004
EM: Round [142] log likelihood: -8515.735668
EM: Round [143] log likelihood: -8515.731352
EM: Round [144] log likelihood: -8515.727055
EM: Round [145] log likelihood: -8515.722777
EM: Round [146] log likelihood: -8515.718518
EM: Round [147] log likelihood: -8515.714277
EM: Round [148] log likelihood: -8515.710056
EM: Round [149] log likelihood: -8515.705852
EM: Round [150] log likelihood: -8515.701668
EM: Round [151] log likelihood: -8515.697501
EM: Round [152] log likelihood: -8515.693352
EM: Round [153] log likelihood: -8515.689222
EM: Round [154] log likelihood: -8515.685109
EM: Round [155] log likelihood: -8515.681014
EM: Round [156] log likelihood: -8515.676936
EM: Round [157] log likelihood: -8515.672876
EM: Round [158] log likelihood: -8515.668833
EM: Round [159] log likelihood: -8515.664808
EM: Round [160] log likelihood: -8515.660799
EM: Round [161] log likelihood: -8515.656807
EM: Round [162] log likelihood: -8515.652833
EM: Round [163] log likelihood: -8515.648874
EM: Round [164] log likelihood: -8515.644933
EM: Round [165] log likelihood: -8515.641008
EM: Round [166] log likelihood: -8515.637099
EM: Round [167] log likelihood: -8515.633206
EM: Round [168] log likelihood: -8515.629330
EM: Round [169] log likelihood: -8515.625469
EM: Round [170] log likelihood: -8515.621624
EM: Round [171] log likelihood: -8515.617796
EM: Round [172] log likelihood: -8515.613982
EM: Round [173] log likelihood: -8515.610185
EM: Round [174] log likelihood: -8515.606403
EM: Round [175] log likelihood: -8515.602636
EM: Round [176] log likelihood: -8515.598884
EM: Round [177] log likelihood: -8515.595148
EM: Round [178] log likelihood: -8515.591426
EM: Round [179] log likelihood: -8515.587720
EM: Round [180] log likelihood: -8515.584028
EM: Round [181] log likelihood: -8515.580351
EM: Round [182] log likelihood: -8515.576689
EM: Round [183] log likelihood: -8515.573041
EM: Round [184] log likelihood: -8515.569408
EM: Round [185] log likelihood: -8515.565789
EM: Round [186] log likelihood: -8515.562185
EM: Round [187] log likelihood: -8515.558594
EM: Round [188] log likelihood: -8515.555018
EM: Round [189] log likelihood: -8515.551455
EM: Round [190] log likelihood: -8515.547907
EM: Round [191] log likelihood: -8515.544372
EM: Round [192] log likelihood: -8515.540851
EM: Round [193] log likelihood: -8515.537344
EM: Round [194] log likelihood: -8515.533850
EM: Round [195] log likelihood: -8515.530369
EM: Round [196] log likelihood: -8515.526902
EM: Round [197] log likelihood: -8515.523449
EM: Round [198] log likelihood: -8515.520008
EM: Round [199] log likelihood: -8515.516581
EM: Round [200] log likelihood: -8515.513166
EM: Round [201] log likelihood: -8515.509765
EM: Round [202] log likelihood: -8515.506376
EM: Round [203] log likelihood: -8515.503000
EM: Round [204] log likelihood: -8515.499637
EM: Round [205] log likelihood: -8515.496287
EM: Round [206] log likelihood: -8515.492949
EM: Round [207] log likelihood: -8515.489623
EM: Round [208] log likelihood: -8515.486310
EM: Round [209] log likelihood: -8515.483010
EM: Round [210] log likelihood: -8515.479721
EM: Round [211] log likelihood: -8515.476445
EM: Round [212] log likelihood: -8515.473181
EM: Round [213] log likelihood: -8515.469929
EM: Round [214] log likelihood: -8515.466689
EM: Round [215] log likelihood: -8515.463461
EM: Round [216] log likelihood: -8515.460244
EM: Round [217] log likelihood: -8515.457040
EM: Round [218] log likelihood: -8515.453847
EM: Round [219] log likelihood: -8515.450665
EM: Round [220] log likelihood: -8515.447495
EM: Round [221] log likelihood: -8515.444337
EM: Round [222] log likelihood: -8515.441190
EM: Round [223] log likelihood: -8515.438055
EM: Round [224] log likelihood: -8515.434930
EM: Round [225] log likelihood: -8515.431817
EM: Round [226] log likelihood: -8515.428715
EM: Round [227] log likelihood: -8515.425624
EM: Round [228] log likelihood: -8515.422544
EM: Round [229] log likelihood: -8515.419476
EM: Round [230] log likelihood: -8515.416418
EM: Round [231] log likelihood: -8515.413370
EM: Round [232] log likelihood: -8515.410334
EM: Round [233] log likelihood: -8515.407308
EM: Round [234] log likelihood: -8515.404293
EM: Round [235] log likelihood: -8515.401289
EM: Round [236] log likelihood: -8515.398295
EM: Round [237] log likelihood: -8515.395312
EM: Round [238] log likelihood: -8515.392339
EM: Round [239] log likelihood: -8515.389376
EM: Round [240] log likelihood: -8515.386424
EM: Round [241] log likelihood: -8515.383482
EM: Round [242] log likelihood: -8515.380550
EM: Round [243] log likelihood: -8515.377628
EM: Round [244] log likelihood: -8515.374716
EM: Round [245] log likelihood: -8515.371814
EM: Round [246] log likelihood: -8515.368923
EM: Round [247] log likelihood: -8515.366041
EM: Round [248] log likelihood: -8515.363169
EM: Round [249] log likelihood: -8515.360307
EM: Round [250] log likelihood: -8515.357454
EM: Round [251] log likelihood: -8515.354612
EM: Round [252] log likelihood: -8515.351778
EM: Round [253] log likelihood: -8515.348955
EM: Round [254] log likelihood: -8515.346141
EM: Round [255] log likelihood: -8515.343337
EM: Round [256] log likelihood: -8515.340542
EM: Round [257] log likelihood: -8515.337756
EM: Round [258] log likelihood: -8515.334980
EM: Round [259] log likelihood: -8515.332213
EM: Round [260] log likelihood: -8515.329455
EM: Round [261] log likelihood: -8515.326706
EM: Round [262] log likelihood: -8515.323967
EM: Round [263] log likelihood: -8515.321237
EM: Round [264] log likelihood: -8515.318516
EM: Round [265] log likelihood: -8515.315803
EM: Round [266] log likelihood: -8515.313100
EM: Round [267] log likelihood: -8515.310406
EM: Round [268] log likelihood: -8515.307720
EM: Round [269] log likelihood: -8515.305044
EM: Round [270] log likelihood: -8515.302376
EM: Round [271] log likelihood: -8515.299717
EM: Round [272] log likelihood: -8515.297066
EM: Round [273] log likelihood: -8515.294424
EM: Round [274] log likelihood: -8515.291791
EM: Round [275] log likelihood: -8515.289166
EM: Round [276] log likelihood: -8515.286550
EM: Round [277] log likelihood: -8515.283943
EM: Round [278] log likelihood: -8515.281343
EM: Round [279] log likelihood: -8515.278752
EM: Round [280] log likelihood: -8515.276170
EM: Round [281] log likelihood: -8515.273596
EM: Round [282] log likelihood: -8515.271030
EM: Round [283] log likelihood: -8515.268472
EM: Round [284] log likelihood: -8515.265922
EM: Round [285] log likelihood: -8515.263381
EM: Round [286] log likelihood: -8515.260848
EM: Round [287] log likelihood: -8515.258322
EM: Round [288] log likelihood: -8515.255805
EM: Round [289] log likelihood: -8515.253296
EM: Round [290] log likelihood: -8515.250794
EM: Round [291] log likelihood: -8515.248301
EM: Round [292] log likelihood: -8515.245815
EM: Round [293] log likelihood: -8515.243338
EM: Round [294] log likelihood: -8515.240868
EM: Round [295] log likelihood: -8515.238406
EM: Round [296] log likelihood: -8515.235951
EM: Round [297] log likelihood: -8515.233504
EM: Round [298] log likelihood: -8515.231065
EM: Round [299] log likelihood: -8515.228633
EM: Round [300] log likelihood: -8515.226209
EM: Round [301] log likelihood: -8515.223793
EM: Round [302] log likelihood: -8515.221384
EM: Round [303] log likelihood: -8515.218982
EM: Round [304] log likelihood: -8515.216588
EM: Round [305] log likelihood: -8515.214202
EM: Round [306] log likelihood: -8515.211822
EM: Round [307] log likelihood: -8515.209450
EM: Round [308] log likelihood: -8515.207085
EM: Round [309] log likelihood: -8515.204728
EM: Round [310] log likelihood: -8515.202378
EM: Round [311] log likelihood: -8515.200035
EM: Round [312] log likelihood: -8515.197699
EM: Round [313] log likelihood: -8515.195370
EM: Round [314] log likelihood: -8515.193048
EM: Round [315] log likelihood: -8515.190733
EM: Round [316] log likelihood: -8515.188426
EM: Round [317] log likelihood: -8515.186125
EM: Round [318] log likelihood: -8515.183831
EM: Round [319] log likelihood: -8515.181544
EM: Round [320] log likelihood: -8515.179265
EM: Round [321] log likelihood: -8515.176991
EM: Round [322] log likelihood: -8515.174725
EM: Round [323] log likelihood: -8515.172466
EM: Round [324] log likelihood: -8515.170213
EM: Round [325] log likelihood: -8515.167967
EM: Round [326] log likelihood: -8515.165728
EM: Round [327] log likelihood: -8515.163495
EM: Round [328] log likelihood: -8515.161269
EM: Round [329] log likelihood: -8515.159050
EM: Round [330] log likelihood: -8515.156837
EM: Round [331] log likelihood: -8515.154631
EM: Round [332] log likelihood: -8515.152432
EM: Round [333] log likelihood: -8515.150239
EM: Round [334] log likelihood: -8515.148052
EM: Round [335] log likelihood: -8515.145872
EM: Round [336] log likelihood: -8515.143698
EM: Round [337] log likelihood: -8515.141531
EM: Round [338] log likelihood: -8515.139370
EM: Round [339] log likelihood: -8515.137215
EM: Round [340] log likelihood: -8515.135066
EM: Round [341] log likelihood: -8515.132924
EM: Round [342] log likelihood: -8515.130788
EM: Round [343] log likelihood: -8515.128659
EM: Round [344] log likelihood: -8515.126535
EM: Round [345] log likelihood: -8515.124418
EM: Round [346] log likelihood: -8515.122307
EM: Round [347] log likelihood: -8515.120202
EM: Round [348] log likelihood: -8515.118103
EM: Round [349] log likelihood: -8515.116010
EM: Round [350] log likelihood: -8515.113923
EM: Round [351] log likelihood: -8515.111842
EM: Round [352] log likelihood: -8515.109767
EM: Round [353] log likelihood: -8515.107698
EM: Round [354] log likelihood: -8515.105635
EM: Round [355] log likelihood: -8515.103578
EM: Round [356] log likelihood: -8515.101527
EM: Round [357] log likelihood: -8515.099481
EM: Round [358] log likelihood: -8515.097442
EM: Round [359] log likelihood: -8515.095408
EM: Round [360] log likelihood: -8515.093380
EM: Round [361] log likelihood: -8515.091358
EM: Round [362] log likelihood: -8515.089341
EM: Round [363] log likelihood: -8515.087330
EM: Round [364] log likelihood: -8515.085325
EM: Round [365] log likelihood: -8515.083326
EM: Round [366] log likelihood: -8515.081332
EM: Round [367] log likelihood: -8515.079344
EM: Round [368] log likelihood: -8515.077361
EM: Round [369] log likelihood: -8515.075384
EM: Round [370] log likelihood: -8515.073413
EM: Round [371] log likelihood: -8515.071447
EM: Round [372] log likelihood: -8515.069486
EM: Round [373] log likelihood: -8515.067531
EM: Round [374] log likelihood: -8515.065582
EM: Round [375] log likelihood: -8515.063638
EM: Round [376] log likelihood: -8515.061699
EM: Round [377] log likelihood: -8515.059766
EM: Round [378] log likelihood: -8515.057838
EM: Round [379] log likelihood: -8515.055915
EM: Round [380] log likelihood: -8515.053998
EM: Round [381] log likelihood: -8515.052086
EM: Round [382] log likelihood: -8515.050179
EM: Round [383] log likelihood: -8515.048278
EM: Round [384] log likelihood: -8515.046382
EM: Round [385] log likelihood: -8515.044491
EM: Round [386] log likelihood: -8515.042605
EM: Round [387] log likelihood: -8515.040724
EM: Round [388] log likelihood: -8515.038849
EM: Round [389] log likelihood: -8515.036979
EM: Round [390] log likelihood: -8515.035113
EM: Round [391] log likelihood: -8515.033253
EM: Round [392] log likelihood: -8515.031398
EM: Round [393] log likelihood: -8515.029548
EM: Round [394] log likelihood: -8515.027703
EM: Round [395] log likelihood: -8515.025863
EM: Round [396] log likelihood: -8515.024028
EM: Round [397] log likelihood: -8515.022198
EM: Round [398] log likelihood: -8515.020373
EM: Round [399] log likelihood: -8515.018553
EM: Round [400] log likelihood: -8515.016738
EM: Round [401] log likelihood: -8515.014927
EM: Round [402] log likelihood: -8515.013122
EM: Round [403] log likelihood: -8515.011321
EM: Round [404] log likelihood: -8515.009525
EM: Round [405] log likelihood: -8515.007734
EM: Round [406] log likelihood: -8515.005948
EM: Round [407] log likelihood: -8515.004167
EM: Round [408] log likelihood: -8515.002390
EM: Round [409] log likelihood: -8515.000618
EM: Round [410] log likelihood: -8514.998851
EM: Round [411] log likelihood: -8514.997089
EM: Round [412] log likelihood: -8514.995331
EM: Round [413] log likelihood: -8514.993578
EM: Round [414] log likelihood: -8514.991829
EM: Round [415] log likelihood: -8514.990086
EM: Round [416] log likelihood: -8514.988346
EM: Round [417] log likelihood: -8514.986612
EM: Round [418] log likelihood: -8514.984882
EM: Round [419] log likelihood: -8514.983156
EM: Round [420] log likelihood: -8514.981435
EM: Round [421] log likelihood: -8514.979719
EM: Round [422] log likelihood: -8514.978007
EM: Round [423] log likelihood: -8514.976300
EM: Round [424] log likelihood: -8514.974597
EM: Round [425] log likelihood: -8514.972898
EM: Round [426] log likelihood: -8514.971204
EM: Round [427] log likelihood: -8514.969515
EM: Round [428] log likelihood: -8514.967830
EM: Round [429] log likelihood: -8514.966149
EM: Round [430] log likelihood: -8514.964472
EM: Round [431] log likelihood: -8514.962800
EM: Round [432] log likelihood: -8514.961133
EM: Round [433] log likelihood: -8514.959469
EM: Round [434] log likelihood: -8514.957810
EM: Round [435] log likelihood: -8514.956155
EM: Round [436] log likelihood: -8514.954505
EM: Round [437] log likelihood: -8514.952859
EM: Round [438] log likelihood: -8514.951217
EM: Round [439] log likelihood: -8514.949579
EM: Round [440] log likelihood: -8514.947945
EM: Round [441] log likelihood: -8514.946316
EM: Round [442] log likelihood: -8514.944691
EM: Round [443] log likelihood: -8514.943070
EM: Round [444] log likelihood: -8514.941453
EM: Round [445] log likelihood: -8514.939840
EM: Round [446] log likelihood: -8514.938232
EM: Round [447] log likelihood: -8514.936627
EM: Round [448] log likelihood: -8514.935027
EM: Round [449] log likelihood: -8514.933431
EM: Round [450] log likelihood: -8514.931839
EM: Round [451] log likelihood: -8514.930250
EM: Round [452] log likelihood: -8514.928666
EM: Round [453] log likelihood: -8514.927086
EM: Round [454] log likelihood: -8514.925510
EM: Round [455] log likelihood: -8514.923938
EM: Round [456] log likelihood: -8514.922370
EM: Round [457] log likelihood: -8514.920806
EM: Round [458] log likelihood: -8514.919245
EM: Round [459] log likelihood: -8514.917689
EM: Round [460] log likelihood: -8514.916137
EM: Round [461] log likelihood: -8514.914588
EM: Round [462] log likelihood: -8514.913044
EM: Round [463] log likelihood: -8514.911503
EM: Round [464] log likelihood: -8514.909966
EM: Round [465] log likelihood: -8514.908433
EM: Round [466] log likelihood: -8514.906904
EM: Round [467] log likelihood: -8514.905379
EM: Round [468] log likelihood: -8514.903857
EM: Round [469] log likelihood: -8514.902339
EM: Round [470] log likelihood: -8514.900826
EM: Round [471] log likelihood: -8514.899315
EM: Round [472] log likelihood: -8514.897809
EM: Round [473] log likelihood: -8514.896306
EM: Round [474] log likelihood: -8514.894807
EM: Round [475] log likelihood: -8514.893312
EM: Round [476] log likelihood: -8514.891821
EM: Round [477] log likelihood: -8514.890333
EM: Round [478] log likelihood: -8514.888849
EM: Round [479] log likelihood: -8514.887368
EM: Round [480] log likelihood: -8514.885891
EM: Round [481] log likelihood: -8514.884418
EM: Round [482] log likelihood: -8514.882948
EM: Round [483] log likelihood: -8514.881482
EM: Round [484] log likelihood: -8514.880020
EM: Round [485] log likelihood: -8514.878561
EM: Round [486] log likelihood: -8514.877106
EM: Round [487] log likelihood: -8514.875655
EM: Round [488] log likelihood: -8514.874206
EM: Round [489] log likelihood: -8514.872762
EM: Round [490] log likelihood: -8514.871321
EM: Round [491] log likelihood: -8514.869883
EM: Round [492] log likelihood: -8514.868449
EM: Round [493] log likelihood: -8514.867019
EM: Round [494] log likelihood: -8514.865592
EM: Round [495] log likelihood: -8514.864168
EM: Round [496] log likelihood: -8514.862748
EM: Round [497] log likelihood: -8514.861332
EM: Round [498] log likelihood: -8514.859918
EM: Round [499] log likelihood: -8514.858508
EM: Round [500] log likelihood: -8514.857102
EM: Round [501] log likelihood: -8514.855699
EM: Round [502] log likelihood: -8514.854299
EM: Round [503] log likelihood: -8514.852903
EM: Round [504] log likelihood: -8514.851510
EM: Round [505] log likelihood: -8514.850121
EM: Round [506] log likelihood: -8514.848735
EM: Round [507] log likelihood: -8514.847352
EM: Round [508] log likelihood: -8514.845972
EM: Round [509] log likelihood: -8514.844596
EM: Round [510] log likelihood: -8514.843223
EM: Round [511] log likelihood: -8514.841853
EM: Round [512] log likelihood: -8514.840487
EM: Round [513] log likelihood: -8514.839124
EM: Round [514] log likelihood: -8514.837764
EM: Round [515] log likelihood: -8514.836407
EM: Round [516] log likelihood: -8514.835054
EM: Round [517] log likelihood: -8514.833704
EM: Round [518] log likelihood: -8514.832357
EM: Round [519] log likelihood: -8514.831013
EM: Round [520] log likelihood: -8514.829672
EM: Round [521] log likelihood: -8514.828335
EM: Round [522] log likelihood: -8514.827001
EM: Round [523] log likelihood: -8514.825669
EM: Round [524] log likelihood: -8514.824341
EM: Round [525] log likelihood: -8514.823017
EM: Round [526] log likelihood: -8514.821695
EM: Round [527] log likelihood: -8514.820376
EM: Round [528] log likelihood: -8514.819061
EM: Round [529] log likelihood: -8514.817748
EM: Round [530] log likelihood: -8514.816439
EM: Round [531] log likelihood: -8514.815133
EM: Round [532] log likelihood: -8514.813830
EM: Round [533] log likelihood: -8514.812530
EM: Round [534] log likelihood: -8514.811232
EM: Round [535] log likelihood: -8514.809938
EM: Round [536] log likelihood: -8514.808647
EM: Round [537] log likelihood: -8514.807359
EM: Round [538] log likelihood: -8514.806074
EM: Round [539] log likelihood: -8514.804792
EM: Round [540] log likelihood: -8514.803513
EM: Round [541] log likelihood: -8514.802237
EM: Round [542] log likelihood: -8514.800964
EM: Round [543] log likelihood: -8514.799694
EM: Round [544] log likelihood: -8514.798427
EM: Round [545] log likelihood: -8514.797163
EM: Round [546] log likelihood: -8514.795901
EM: Round [547] log likelihood: -8514.794643
EM: Round [548] log likelihood: -8514.793387
EM: Round [549] log likelihood: -8514.792135
EM: Round [550] log likelihood: -8514.790885
EM: Round [551] log likelihood: -8514.789638
EM: Round [552] log likelihood: -8514.788394
EM: Round [553] log likelihood: -8514.787153
EM: Round [554] log likelihood: -8514.785915
EM: Round [555] log likelihood: -8514.784679
EM: Round [556] log likelihood: -8514.783447
EM: Round [557] log likelihood: -8514.782217
EM: Round [558] log likelihood: -8514.780990
EM: Round [559] log likelihood: -8514.779766
EM: Round [560] log likelihood: -8514.778545
EM: Round [561] log likelihood: -8514.777326
EM: Round [562] log likelihood: -8514.776110
EM: Round [563] log likelihood: -8514.774897
EM: Round [564] log likelihood: -8514.773687
EM: Round [565] log likelihood: -8514.772480
EM: Round [566] log likelihood: -8514.771275
EM: Round [567] log likelihood: -8514.770073
EM: Round [568] log likelihood: -8514.768874
EM: Round [569] log likelihood: -8514.767677
EM: Round [570] log likelihood: -8514.766483
EM: Round [571] log likelihood: -8514.765292
EM: Round [572] log likelihood: -8514.764104
EM: Round [573] log likelihood: -8514.762918
EM: Round [574] log likelihood: -8514.761735
EM: Round [575] log likelihood: -8514.760555
EM: Round [576] log likelihood: -8514.759377
EM: Round [577] log likelihood: -8514.758202
EM: Round [578] log likelihood: -8514.757029
EM: Round [579] log likelihood: -8514.755860
EM: Round [580] log likelihood: -8514.754693
EM: Round [581] log likelihood: -8514.753528
EM: Round [582] log likelihood: -8514.752366
EM: Round [583] log likelihood: -8514.751207
EM: Round [584] log likelihood: -8514.750050
EM: Round [585] log likelihood: -8514.748896
EM: Round [586] log likelihood: -8514.747744
EM: Round [587] log likelihood: -8514.746595
EM: Round [588] log likelihood: -8514.745449
EM: Round [589] log likelihood: -8514.744305
EM: Round [590] log likelihood: -8514.743164
EM: Round [591] log likelihood: -8514.742025
EM: Round [592] log likelihood: -8514.740889
EM: Round [593] log likelihood: -8514.739755
EM: Round [594] log likelihood: -8514.738624
EM: Round [595] log likelihood: -8514.737495
EM: Round [596] log likelihood: -8514.736369
EM: Round [597] log likelihood: -8514.735245
EM: Round [598] log likelihood: -8514.734124
EM: Round [599] log likelihood: -8514.733005
EM: Round [600] log likelihood: -8514.731889
EM: Round [601] log likelihood: -8514.730775
EM: Round [602] log likelihood: -8514.729664
EM: Round [603] log likelihood: -8514.728555
EM: Round [604] log likelihood: -8514.727449
EM: Round [605] log likelihood: -8514.726345
EM: Round [606] log likelihood: -8514.725243
EM: Round [607] log likelihood: -8514.724144
EM: Round [608] log likelihood: -8514.723047
EM: Round [609] log likelihood: -8514.721953
EM: Round [610] log likelihood: -8514.720861
EM: Round [611] log likelihood: -8514.719771
EM: Round [612] log likelihood: -8514.718684
EM: Round [613] log likelihood: -8514.717599
EM: Round [614] log likelihood: -8514.716517
EM: Round [615] log likelihood: -8514.715437
EM: Round [616] log likelihood: -8514.714359
EM: Round [617] log likelihood: -8514.713284
EM: Round [618] log likelihood: -8514.712211
EM: Round [619] log likelihood: -8514.711140
EM: Round [620] log likelihood: -8514.710072
EM: Round [621] log likelihood: -8514.709006
EM: Round [622] log likelihood: -8514.707942
EM: Round [623] log likelihood: -8514.706881
EM: Round [624] log likelihood: -8514.705822
EM: Round [625] log likelihood: -8514.704765
EM: Round [626] log likelihood: -8514.703710
EM: Round [627] log likelihood: -8514.702658
EM: Round [628] log likelihood: -8514.701608
EM: Round [629] log likelihood: -8514.700561
EM: Round [630] log likelihood: -8514.699515
EM: Round [631] log likelihood: -8514.698472
EM: Round [632] log likelihood: -8514.697431
EM: Round [633] log likelihood: -8514.696392
EM: Round [634] log likelihood: -8514.695356
EM: Round [635] log likelihood: -8514.694322
EM: Round [636] log likelihood: -8514.693290
EM: Round [637] log likelihood: -8514.692260
EM: Round [638] log likelihood: -8514.691232
EM: Round [639] log likelihood: -8514.690207
EM: Round [640] log likelihood: -8514.689184
EM: Round [641] log likelihood: -8514.688163
EM: Round [642] log likelihood: -8514.687144
EM: Round [643] log likelihood: -8514.686127
EM: Round [644] log likelihood: -8514.685113
EM: Round [645] log likelihood: -8514.684100
EM: Round [646] log likelihood: -8514.683090
EM: Round [647] log likelihood: -8514.682082
EM: Round [648] log likelihood: -8514.681076
EM: Round [649] log likelihood: -8514.680073
EM: Round [650] log likelihood: -8514.679071
EM: Round [651] log likelihood: -8514.678072
EM: Round [652] log likelihood: -8514.677074
EM: Round [653] log likelihood: -8514.676079
EM: Round [654] log likelihood: -8514.675086
EM: Round [655] log likelihood: -8514.674095
EM: Round [656] log likelihood: -8514.673106
EM: Round [657] log likelihood: -8514.672119
EM: Round [658] log likelihood: -8514.671135
EM: Round [659] log likelihood: -8514.670152
EM: Round [660] log likelihood: -8514.669171
EM: Round [661] log likelihood: -8514.668193
EM: Round [662] log likelihood: -8514.667216
EM: Round [663] log likelihood: -8514.666242
EM: Round [664] log likelihood: -8514.665269
EM: Round [665] log likelihood: -8514.664299
EM: Round [666] log likelihood: -8514.663331
EM: Round [667] log likelihood: -8514.662365
EM: Round [668] log likelihood: -8514.661400
EM: Round [669] log likelihood: -8514.660438
EM: Round [670] log likelihood: -8514.659478
EM: Round [671] log likelihood: -8514.658520
EM: Round [672] log likelihood: -8514.657564
EM: Round [673] log likelihood: -8514.656609
EM: Round [674] log likelihood: -8514.655657
EM: Round [675] log likelihood: -8514.654707
EM: Round [676] log likelihood: -8514.653759
EM: Round [677] log likelihood: -8514.652812
EM: Round [678] log likelihood: -8514.651868
EM: Round [679] log likelihood: -8514.650926
EM: Round [680] log likelihood: -8514.649985
EM: Round [681] log likelihood: -8514.649047
EM: Round [682] log likelihood: -8514.648111
EM: Round [683] log likelihood: -8514.647176
EM: Round [684] log likelihood: -8514.646243
EM: Round [685] log likelihood: -8514.645313
EM: Round [686] log likelihood: -8514.644384
EM: Round [687] log likelihood: -8514.643457
EM: Round [688] log likelihood: -8514.642532
EM: Round [689] log likelihood: -8514.641609
EM: Round [690] log likelihood: -8514.640688
EM: Round [691] log likelihood: -8514.639769
EM: Round [692] log likelihood: -8514.638852
EM: Round [693] log likelihood: -8514.637936
EM: Round [694] log likelihood: -8514.637023
EM: Round [695] log likelihood: -8514.636111
EM: Round [696] log likelihood: -8514.635201
EM: Round [697] log likelihood: -8514.634293
EM: Round [698] log likelihood: -8514.633387
EM: Round [699] log likelihood: -8514.632483
EM: Round [700] log likelihood: -8514.631581
EM: Round [701] log likelihood: -8514.630680
EM: Round [702] log likelihood: -8514.629782
EM: Round [703] log likelihood: -8514.628885
EM: Round [704] log likelihood: -8514.627990
EM: Round [705] log likelihood: -8514.627097
EM: Round [706] log likelihood: -8514.626205
EM: Round [707] log likelihood: -8514.625316
EM: Round [708] log likelihood: -8514.624428
EM: Round [709] log likelihood: -8514.623542
EM: Round [710] log likelihood: -8514.622658
EM: Round [711] log likelihood: -8514.621776
EM: Round [712] log likelihood: -8514.620895
EM: Round [713] log likelihood: -8514.620017
EM: Round [714] log likelihood: -8514.619140
EM: Round [715] log likelihood: -8514.618264
EM: Round [716] log likelihood: -8514.617391
EM: Round [717] log likelihood: -8514.616519
EM: Round [718] log likelihood: -8514.615650
EM: Round [719] log likelihood: -8514.614781
EM: Round [720] log likelihood: -8514.613915
EM: Round [721] log likelihood: -8514.613050
EM: Round [722] log likelihood: -8514.612188
EM: Round [723] log likelihood: -8514.611327
EM: Round [724] log likelihood: -8514.610467
EM: Round [725] log likelihood: -8514.609609
EM: Round [726] log likelihood: -8514.608754
EM: Round [727] log likelihood: -8514.607899
EM: Round [728] log likelihood: -8514.607047
EM: Round [729] log likelihood: -8514.606196
EM: Round [730] log likelihood: -8514.605347
EM: Round [731] log likelihood: -8514.604500
EM: Round [732] log likelihood: -8514.603654
EM: Round [733] log likelihood: -8514.602810
EM: Round [734] log likelihood: -8514.601968
EM: Round [735] log likelihood: -8514.601127
EM: Round [736] log likelihood: -8514.600288
EM: Round [737] log likelihood: -8514.599451
EM: Round [738] log likelihood: -8514.598615
EM: Round [739] log likelihood: -8514.597781
EM: Round [740] log likelihood: -8514.596949
EM: Round [741] log likelihood: -8514.596118
EM: Round [742] log likelihood: -8514.595289
EM: Round [743] log likelihood: -8514.594462
EM: Round [744] log likelihood: -8514.593636
EM: Round [745] log likelihood: -8514.592812
EM: Round [746] log likelihood: -8514.591990
EM: Round [747] log likelihood: -8514.591169
EM: Round [748] log likelihood: -8514.590350
EM: Round [749] log likelihood: -8514.589533
EM: Round [750] log likelihood: -8514.588717
EM: Round [751] log likelihood: -8514.587902
EM: Round [752] log likelihood: -8514.587090
EM: Round [753] log likelihood: -8514.586279
EM: Round [754] log likelihood: -8514.585469
EM: Round [755] log likelihood: -8514.584661
EM: Round [756] log likelihood: -8514.583855
EM: Round [757] log likelihood: -8514.583050
EM: Round [758] log likelihood: -8514.582247
EM: Round [759] log likelihood: -8514.581446
EM: Round [760] log likelihood: -8514.580646
EM: Round [761] log likelihood: -8514.579847
EM: Round [762] log likelihood: -8514.579051
EM: Round [763] log likelihood: -8514.578255
EM: Round [764] log likelihood: -8514.577462
EM: Round [765] log likelihood: -8514.576669
EM: Round [766] log likelihood: -8514.575879
EM: Round [767] log likelihood: -8514.575090
EM: Round [768] log likelihood: -8514.574302
EM: Round [769] log likelihood: -8514.573516
EM: Round [770] log likelihood: -8514.572732
EM: Round [771] log likelihood: -8514.571949
EM: Round [772] log likelihood: -8514.571168
EM: Round [773] log likelihood: -8514.570388
EM: Round [774] log likelihood: -8514.569610
EM: Round [775] log likelihood: -8514.568833
EM: Round [776] log likelihood: -8514.568057
EM: Round [777] log likelihood: -8514.567284
EM: Round [778] log likelihood: -8514.566511
EM: Round [779] log likelihood: -8514.565741
EM: Round [780] log likelihood: -8514.564971
EM: Round [781] log likelihood: -8514.564204
EM: Round [782] log likelihood: -8514.563437
EM: Round [783] log likelihood: -8514.562672
EM: Round [784] log likelihood: -8514.561909
EM: Round [785] log likelihood: -8514.561147
EM: Round [786] log likelihood: -8514.560387
EM: Round [787] log likelihood: -8514.559628
EM: Round [788] log likelihood: -8514.558870
EM: Round [789] log likelihood: -8514.558114
EM: Round [790] log likelihood: -8514.557360
EM: Round [791] log likelihood: -8514.556607
EM: Round [792] log likelihood: -8514.555855
EM: Round [793] log likelihood: -8514.555105
EM: Round [794] log likelihood: -8514.554356
EM: Round [795] log likelihood: -8514.553609
EM: Round [796] log likelihood: -8514.552863
EM: Round [797] log likelihood: -8514.552119
EM: Round [798] log likelihood: -8514.551376
EM: Round [799] log likelihood: -8514.550634
EM: Round [800] log likelihood: -8514.549894
EM: Round [801] log likelihood: -8514.549155
EM: Round [802] log likelihood: -8514.548418
EM: Round [803] log likelihood: -8514.547682
EM: Round [804] log likelihood: -8514.546947
EM: Round [805] log likelihood: -8514.546214
EM: Round [806] log likelihood: -8514.545483
EM: Round [807] log likelihood: -8514.544752
EM: Round [808] log likelihood: -8514.544023
EM: Round [809] log likelihood: -8514.543296
EM: Round [810] log likelihood: -8514.542570
EM: Round [811] log likelihood: -8514.541845
EM: Round [812] log likelihood: -8514.541122
EM: Round [813] log likelihood: -8514.540400
EM: Round [814] log likelihood: -8514.539679
EM: Round [815] log likelihood: -8514.538960
EM: Round [816] log likelihood: -8514.538242
EM: Round [817] log likelihood: -8514.537525
EM: Round [818] log likelihood: -8514.536810
EM: Round [819] log likelihood: -8514.536096
EM: Round [820] log likelihood: -8514.535384
EM: Round [821] log likelihood: -8514.534673
EM: Round [822] log likelihood: -8514.533963
EM: Round [823] log likelihood: -8514.533254
EM: Round [824] log likelihood: -8514.532547
EM: Round [825] log likelihood: -8514.531841
EM: Round [826] log likelihood: -8514.531137
EM: Round [827] log likelihood: -8514.530434
EM: Round [828] log likelihood: -8514.529732
EM: Round [829] log likelihood: -8514.529032
EM: Round [830] log likelihood: -8514.528332
EM: Round [831] log likelihood: -8514.527635
EM: Round [832] log likelihood: -8514.526938
EM: Round [833] log likelihood: -8514.526243
EM: Round [834] log likelihood: -8514.525549
EM: Round [835] log likelihood: -8514.524856
EM: Round [836] log likelihood: -8514.524165
EM: Round [837] log likelihood: -8514.523475
EM: Round [838] log likelihood: -8514.522786
EM: Round [839] log likelihood: -8514.522099
EM: Round [840] log likelihood: -8514.521413
EM: Round [841] log likelihood: -8514.520728
EM: Round [842] log likelihood: -8514.520044
EM: Round [843] log likelihood: -8514.519362
EM: Round [844] log likelihood: -8514.518681
EM: Round [845] log likelihood: -8514.518001
EM: Round [846] log likelihood: -8514.517322
EM: Round [847] log likelihood: -8514.516645
EM: Round [848] log likelihood: -8514.515969
EM: Round [849] log likelihood: -8514.515295
EM: Round [850] log likelihood: -8514.514621
EM: Round [851] log likelihood: -8514.513949
EM: Round [852] log likelihood: -8514.513278
EM: Round [853] log likelihood: -8514.512608
EM: Round [854] log likelihood: -8514.511940
EM: Round [855] log likelihood: -8514.511272
EM: Round [856] log likelihood: -8514.510606
EM: Round [857] log likelihood: -8514.509942
EM: Round [858] log likelihood: -8514.509278
EM: Round [859] log likelihood: -8514.508616
EM: Round [860] log likelihood: -8514.507955
EM: Round [861] log likelihood: -8514.507295
EM: Round [862] log likelihood: -8514.506636
EM: Round [863] log likelihood: -8514.505979
EM: Round [864] log likelihood: -8514.505322
EM: Round [865] log likelihood: -8514.504667
EM: Round [866] log likelihood: -8514.504014
EM: Round [867] log likelihood: -8514.503361
EM: Round [868] log likelihood: -8514.502710
EM: Round [869] log likelihood: -8514.502059
EM: Round [870] log likelihood: -8514.501410
EM: Round [871] log likelihood: -8514.500763
EM: Round [872] log likelihood: -8514.500116
EM: Round [873] log likelihood: -8514.499470
EM: Round [874] log likelihood: -8514.498826
EM: Round [875] log likelihood: -8514.498183
EM: Round [876] log likelihood: -8514.497541
EM: Round [877] log likelihood: -8514.496900
EM: Round [878] log likelihood: -8514.496261
EM: Round [879] log likelihood: -8514.495622
EM: Round [880] log likelihood: -8514.494985
EM: Round [881] log likelihood: -8514.494349
EM: Round [882] log likelihood: -8514.493714
EM: Round [883] log likelihood: -8514.493081
EM: Round [884] log likelihood: -8514.492448
EM: Round [885] log likelihood: -8514.491817
EM: Round [886] log likelihood: -8514.491186
EM: Round [887] log likelihood: -8514.490557
EM: Round [888] log likelihood: -8514.489929
EM: Round [889] log likelihood: -8514.489302
EM: Round [890] log likelihood: -8514.488676
EM: Round [891] log likelihood: -8514.488052
EM: Round [892] log likelihood: -8514.487428
EM: Round [893] log likelihood: -8514.486806
EM: Round [894] log likelihood: -8514.486185
EM: Round [895] log likelihood: -8514.485565
EM: Round [896] log likelihood: -8514.484946
EM: Round [897] log likelihood: -8514.484328
EM: Round [898] log likelihood: -8514.483711
EM: Round [899] log likelihood: -8514.483096
EM: Round [900] log likelihood: -8514.482481
EM: Round [901] log likelihood: -8514.481868
EM: Round [902] log likelihood: -8514.481256
EM: Round [903] log likelihood: -8514.480645
EM: Round [904] log likelihood: -8514.480035
EM: Round [905] log likelihood: -8514.479426
EM: Round [906] log likelihood: -8514.478818
EM: Round [907] log likelihood: -8514.478211
EM: Round [908] log likelihood: -8514.477605
EM: Round [909] log likelihood: -8514.477001
EM: Round [910] log likelihood: -8514.476397
EM: Round [911] log likelihood: -8514.475795
EM: Round [912] log likelihood: -8514.475193
EM: Round [913] log likelihood: -8514.474593
EM: Round [914] log likelihood: -8514.473994
EM: Round [915] log likelihood: -8514.473396
EM: Round [916] log likelihood: -8514.472799
EM: Round [917] log likelihood: -8514.472203
EM: Round [918] log likelihood: -8514.471608
EM: Round [919] log likelihood: -8514.471014
EM: Round [920] log likelihood: -8514.470421
EM: Round [921] log likelihood: -8514.469830
EM: Round [922] log likelihood: -8514.469239
EM: Round [923] log likelihood: -8514.468649
EM: Round [924] log likelihood: -8514.468061
EM: Round [925] log likelihood: -8514.467473
EM: Round [926] log likelihood: -8514.466887
EM: Round [927] log likelihood: -8514.466301
EM: Round [928] log likelihood: -8514.465717
EM: Round [929] log likelihood: -8514.465134
EM: Round [930] log likelihood: -8514.464551
EM: Round [931] log likelihood: -8514.463970
EM: Round [932] log likelihood: -8514.463390
EM: Round [933] log likelihood: -8514.462811
EM: Round [934] log likelihood: -8514.462232
EM: Round [935] log likelihood: -8514.461655
EM: Round [936] log likelihood: -8514.461079
EM: Round [937] log likelihood: -8514.460504
EM: Round [938] log likelihood: -8514.459930
EM: Round [939] log likelihood: -8514.459357
EM: Round [940] log likelihood: -8514.458785
EM: Round [941] log likelihood: -8514.458214
EM: Round [942] log likelihood: -8514.457644
EM: Round [943] log likelihood: -8514.457075
EM: Round [944] log likelihood: -8514.456507
EM: Round [945] log likelihood: -8514.455940
EM: Round [946] log likelihood: -8514.455374
EM: Round [947] log likelihood: -8514.454808
EM: Round [948] log likelihood: -8514.454244
EM: Round [949] log likelihood: -8514.453681
EM: Round [950] log likelihood: -8514.453119
EM: Round [951] log likelihood: -8514.452558
EM: Round [952] log likelihood: -8514.451998
EM: Round [953] log likelihood: -8514.451439
EM: Round [954] log likelihood: -8514.450881
EM: Round [955] log likelihood: -8514.450324
EM: Round [956] log likelihood: -8514.449768
EM: Round [957] log likelihood: -8514.449212
EM: Round [958] log likelihood: -8514.448658
EM: Round [959] log likelihood: -8514.448105
EM: Round [960] log likelihood: -8514.447553
EM: Round [961] log likelihood: -8514.447001
EM: Round [962] log likelihood: -8514.446451
EM: Round [963] log likelihood: -8514.445901
EM: Round [964] log likelihood: -8514.445353
EM: Round [965] log likelihood: -8514.444806
EM: Round [966] log likelihood: -8514.444259
EM: Round [967] log likelihood: -8514.443713
EM: Round [968] log likelihood: -8514.443169
EM: Round [969] log likelihood: -8514.442625
EM: Round [970] log likelihood: -8514.442082
EM: Round [971] log likelihood: -8514.441541
EM: Round [972] log likelihood: -8514.441000
EM: Round [973] log likelihood: -8514.440460
EM: Round [974] log likelihood: -8514.439921
EM: Round [975] log likelihood: -8514.439383
EM: Round [976] log likelihood: -8514.438846
EM: Round [977] log likelihood: -8514.438310
EM: Round [978] log likelihood: -8514.437774
EM: Round [979] log likelihood: -8514.437240
EM: Round [980] log likelihood: -8514.436707
EM: Round [981] log likelihood: -8514.436174
EM: Round [982] log likelihood: -8514.435643
EM: Round [983] log likelihood: -8514.435112
EM: Round [984] log likelihood: -8514.434582
EM: Round [985] log likelihood: -8514.434053
EM: Round [986] log likelihood: -8514.433525
EM: Round [987] log likelihood: -8514.432998
EM: Round [988] log likelihood: -8514.432472
EM: Round [989] log likelihood: -8514.431947
EM: Round [990] log likelihood: -8514.431423
EM: Round [991] log likelihood: -8514.430900
EM: Round [992] log likelihood: -8514.430377
EM: Round [993] log likelihood: -8514.429856
EM: Round [994] log likelihood: -8514.429335
EM: Round [995] log likelihood: -8514.428815
EM: Round [996] log likelihood: -8514.428296
EM: Round [997] log likelihood: -8514.427778
EM: Round [998] log likelihood: -8514.427261
EM: Round [999] log likelihood: -8514.426745
EM: Round [1000] log likelihood: -8514.426230
EM: Round [1001] log likelihood: -8514.425715
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/init_EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/filter_fusions_by_frag_thresholds.pl --min_junction_reads 0 --min_sum_frags 1 --min_novel_junction_support 3 --min_spanning_frags_only 5 --fusion_preds /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj --require_LDAS 1 > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/filter_by_frag_threshs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,JunctionReads  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_extract_junc_reads.ok
Running: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam"
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
Execution Time = 0.00 minutes. CMD: bash -c "set -eof pipefail; /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_junction_reads_by_accession.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_junction_read_accs /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_junc_reads.sam | samtools view -@ 8 -bT /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam"
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_junc_reads_bam.ok
Running: samtools index /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/samtools_idx_junc_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.junction_reads.bam.tabix.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_extractions.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary LeftGene,RightGene,SpanningFrags  > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/span_reads_acc.ok
Running: samtools view -H /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools view -H /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam -b -o /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/init_spanning_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam || : 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/retrieve_fusion_spanning_reads_by_accession.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.fusion_spanning_read_accs /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam.fusion_span_reads.sam | samtools view -@ 8 -bT /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa -  | samtools sort -@ 8 - -o /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam || : 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_spanning_reads.ok
Running: samtools index /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam
Execution Time = 0.00 minutes. CMD: samtools index /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/samtools_index_span_reads_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_pair_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bam_to_bed.ok
Running: sort -k1,1 -k2,2n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: sort -k1,1 -k2,2n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bedsort.ok
Running: bgzip -f /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed.sorted.bed
Execution Time = 0.00 minutes. CMD: bgzip -f /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed.sorted.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bgzip.ok
Running: tabix -p bed /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Execution Time = 0.00 minutes. CMD: tabix -p bed /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.bed.sorted.bed.gz
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/tih_rna_sample_00087_B23WHTKLT4_1.spanning_reads.bam.tabix.ok
Running: cp /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.star.cSorted.dupsMarked.bam /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/cp_consol_bam.ok
Running: samtools index /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam
Execution Time = 0.01 minutes. CMD: samtools index /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/index_consol_bam.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam --max_insert_size 10000000 
-extracting read coordinates from /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam into /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.read_coords > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.frag_coords > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.frag_coords.coord_sorted
Execution Time = 0.20 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/SAM_to_frag_coords.pl --sam /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam --max_insert_size 10000000 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_sam_frag_coordss.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.frag_coords > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.FusionJuncSpan
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_summary_to_igv_JuncSpan_fmt.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.consolidated.bam.frag_coords > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.FusionJuncSpan
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_juncspan_fmt.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.Pfam.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_pfam_domain_info.pl --finspector_gtf /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.Pfam.gff3 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_pfam_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.Pfam.gff3 > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.Pfam.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.Pfam.gff3 > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.Pfam.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_pfam_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.seqsimilar.gff3 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/get_seq_similar_region_FI_coordinates.pl --finspector_gtf /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf  --genome_lib_dir ctat_genome_lib_build_dir  > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.seqsimilar.gff3 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_seqsim_gff3.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.seqsimilar.bed
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/transcript_gff3_to_bed.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.seqsimilar.gff3 > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.igv.seqsimilar.bed
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/prep_igv_seqsim_bed.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/append_breakpoint_junction_info_via_FI_contigs.pl /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa > /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/add_splice_info.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/blast_and_promiscuity_filter.pl  --fusion_preds /tmp/nxf.25Ed2bCW7h/fi_workdir/tih_rna_sample_00087_B23WHTKLT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --out_prefix /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1 --genome_lib_dir ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 50
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/blast_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir
-done, see /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/../FusionFilter/util/filter_by_annotation_rules.pl  --fusions /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter --genome_lib_dir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/annot_filter.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
EM: Starting log likelihood: -8310.907991
EM: Round [1] log likelihood: -8310.019635
EM: Round [2] log likelihood: -8310.009678
EM: Round [3] log likelihood: -8310.002587
EM: Round [4] log likelihood: -8309.995563
EM: Round [5] log likelihood: -8309.988596
EM: Round [6] log likelihood: -8309.981683
EM: Round [7] log likelihood: -8309.974825
EM: Round [8] log likelihood: -8309.968021
EM: Round [9] log likelihood: -8309.961270
EM: Round [10] log likelihood: -8309.954571
EM: Round [11] log likelihood: -8309.947924
EM: Round [12] log likelihood: -8309.941327
EM: Round [13] log likelihood: -8309.934781
EM: Round [14] log likelihood: -8309.928283
EM: Round [15] log likelihood: -8309.921835
EM: Round [16] log likelihood: -8309.915434
EM: Round [17] log likelihood: -8309.909081
EM: Round [18] log likelihood: -8309.902774
EM: Round [19] log likelihood: -8309.896513
EM: Round [20] log likelihood: -8309.890298
EM: Round [21] log likelihood: -8309.884128
EM: Round [22] log likelihood: -8309.878001
EM: Round [23] log likelihood: -8309.871919
EM: Round [24] log likelihood: -8309.865879
EM: Round [25] log likelihood: -8309.859882
EM: Round [26] log likelihood: -8309.853927
EM: Round [27] log likelihood: -8309.848013
EM: Round [28] log likelihood: -8309.842140
EM: Round [29] log likelihood: -8309.836308
EM: Round [30] log likelihood: -8309.830515
EM: Round [31] log likelihood: -8309.824761
EM: Round [32] log likelihood: -8309.819047
EM: Round [33] log likelihood: -8309.813371
EM: Round [34] log likelihood: -8309.807732
EM: Round [35] log likelihood: -8309.802132
EM: Round [36] log likelihood: -8309.796568
EM: Round [37] log likelihood: -8309.791040
EM: Round [38] log likelihood: -8309.785549
EM: Round [39] log likelihood: -8309.780093
EM: Round [40] log likelihood: -8309.774673
EM: Round [41] log likelihood: -8309.769288
EM: Round [42] log likelihood: -8309.763936
EM: Round [43] log likelihood: -8309.758619
EM: Round [44] log likelihood: -8309.753336
EM: Round [45] log likelihood: -8309.748085
EM: Round [46] log likelihood: -8309.742868
EM: Round [47] log likelihood: -8309.737683
EM: Round [48] log likelihood: -8309.732530
EM: Round [49] log likelihood: -8309.727409
EM: Round [50] log likelihood: -8309.722319
EM: Round [51] log likelihood: -8309.717260
EM: Round [52] log likelihood: -8309.712232
EM: Round [53] log likelihood: -8309.707235
EM: Round [54] log likelihood: -8309.702267
EM: Round [55] log likelihood: -8309.697329
EM: Round [56] log likelihood: -8309.692420
EM: Round [57] log likelihood: -8309.687541
EM: Round [58] log likelihood: -8309.682690
EM: Round [59] log likelihood: -8309.677867
EM: Round [60] log likelihood: -8309.673073
EM: Round [61] log likelihood: -8309.668307
EM: Round [62] log likelihood: -8309.663568
EM: Round [63] log likelihood: -8309.658856
EM: Round [64] log likelihood: -8309.654171
EM: Round [65] log likelihood: -8309.649513
EM: Round [66] log likelihood: -8309.644881
EM: Round [67] log likelihood: -8309.640276
EM: Round [68] log likelihood: -8309.635696
EM: Round [69] log likelihood: -8309.631142
EM: Round [70] log likelihood: -8309.626614
EM: Round [71] log likelihood: -8309.622110
EM: Round [72] log likelihood: -8309.617631
EM: Round [73] log likelihood: -8309.613177
EM: Round [74] log likelihood: -8309.608748
EM: Round [75] log likelihood: -8309.604342
EM: Round [76] log likelihood: -8309.599960
EM: Round [77] log likelihood: -8309.595602
EM: Round [78] log likelihood: -8309.591267
EM: Round [79] log likelihood: -8309.586956
EM: Round [80] log likelihood: -8309.582667
EM: Round [81] log likelihood: -8309.578401
EM: Round [82] log likelihood: -8309.574158
EM: Round [83] log likelihood: -8309.569937
EM: Round [84] log likelihood: -8309.565738
EM: Round [85] log likelihood: -8309.561561
EM: Round [86] log likelihood: -8309.557406
EM: Round [87] log likelihood: -8309.553272
EM: Round [88] log likelihood: -8309.549160
EM: Round [89] log likelihood: -8309.545069
EM: Round [90] log likelihood: -8309.540998
EM: Round [91] log likelihood: -8309.536948
EM: Round [92] log likelihood: -8309.532919
EM: Round [93] log likelihood: -8309.528910
EM: Round [94] log likelihood: -8309.524921
EM: Round [95] log likelihood: -8309.520953
EM: Round [96] log likelihood: -8309.517004
EM: Round [97] log likelihood: -8309.513074
EM: Round [98] log likelihood: -8309.509164
EM: Round [99] log likelihood: -8309.505274
EM: Round [100] log likelihood: -8309.501402
EM: Round [101] log likelihood: -8309.497550
EM: Round [102] log likelihood: -8309.493716
EM: Round [103] log likelihood: -8309.489901
EM: Round [104] log likelihood: -8309.486104
EM: Round [105] log likelihood: -8309.482325
EM: Round [106] log likelihood: -8309.478565
EM: Round [107] log likelihood: -8309.474823
EM: Round [108] log likelihood: -8309.471098
EM: Round [109] log likelihood: -8309.467391
EM: Round [110] log likelihood: -8309.463702
EM: Round [111] log likelihood: -8309.460030
EM: Round [112] log likelihood: -8309.456375
EM: Round [113] log likelihood: -8309.452737
EM: Round [114] log likelihood: -8309.449117
EM: Round [115] log likelihood: -8309.445513
EM: Round [116] log likelihood: -8309.441926
EM: Round [117] log likelihood: -8309.438355
EM: Round [118] log likelihood: -8309.434801
EM: Round [119] log likelihood: -8309.431263
EM: Round [120] log likelihood: -8309.427741
EM: Round [121] log likelihood: -8309.424235
EM: Round [122] log likelihood: -8309.420745
EM: Round [123] log likelihood: -8309.417271
EM: Round [124] log likelihood: -8309.413812
EM: Round [125] log likelihood: -8309.410369
EM: Round [126] log likelihood: -8309.406941
EM: Round [127] log likelihood: -8309.403529
EM: Round [128] log likelihood: -8309.400131
EM: Round [129] log likelihood: -8309.396749
EM: Round [130] log likelihood: -8309.393382
EM: Round [131] log likelihood: -8309.390029
EM: Round [132] log likelihood: -8309.386691
EM: Round [133] log likelihood: -8309.383368
EM: Round [134] log likelihood: -8309.380059
EM: Round [135] log likelihood: -8309.376764
EM: Round [136] log likelihood: -8309.373484
EM: Round [137] log likelihood: -8309.370217
EM: Round [138] log likelihood: -8309.366965
EM: Round [139] log likelihood: -8309.363727
EM: Round [140] log likelihood: -8309.360502
EM: Round [141] log likelihood: -8309.357292
EM: Round [142] log likelihood: -8309.354094
EM: Round [143] log likelihood: -8309.350911
EM: Round [144] log likelihood: -8309.347740
EM: Round [145] log likelihood: -8309.344583
EM: Round [146] log likelihood: -8309.341439
EM: Round [147] log likelihood: -8309.338309
EM: Round [148] log likelihood: -8309.335191
EM: Round [149] log likelihood: -8309.332086
EM: Round [150] log likelihood: -8309.328994
EM: Round [151] log likelihood: -8309.325915
EM: Round [152] log likelihood: -8309.322849
EM: Round [153] log likelihood: -8309.319795
EM: Round [154] log likelihood: -8309.316753
EM: Round [155] log likelihood: -8309.313724
EM: Round [156] log likelihood: -8309.310707
EM: Round [157] log likelihood: -8309.307702
EM: Round [158] log likelihood: -8309.304710
EM: Round [159] log likelihood: -8309.301729
EM: Round [160] log likelihood: -8309.298761
EM: Round [161] log likelihood: -8309.295804
EM: Round [162] log likelihood: -8309.292859
EM: Round [163] log likelihood: -8309.289926
EM: Round [164] log likelihood: -8309.287004
EM: Round [165] log likelihood: -8309.284094
EM: Round [166] log likelihood: -8309.281195
EM: Round [167] log likelihood: -8309.278308
EM: Round [168] log likelihood: -8309.275432
EM: Round [169] log likelihood: -8309.272567
EM: Round [170] log likelihood: -8309.269714
EM: Round [171] log likelihood: -8309.266871
EM: Round [172] log likelihood: -8309.264040
EM: Round [173] log likelihood: -8309.261219
EM: Round [174] log likelihood: -8309.258409
EM: Round [175] log likelihood: -8309.255610
EM: Round [176] log likelihood: -8309.252822
EM: Round [177] log likelihood: -8309.250045
EM: Round [178] log likelihood: -8309.247278
EM: Round [179] log likelihood: -8309.244521
EM: Round [180] log likelihood: -8309.241775
EM: Round [181] log likelihood: -8309.239039
EM: Round [182] log likelihood: -8309.236314
EM: Round [183] log likelihood: -8309.233599
EM: Round [184] log likelihood: -8309.230894
EM: Round [185] log likelihood: -8309.228199
EM: Round [186] log likelihood: -8309.225514
EM: Round [187] log likelihood: -8309.222839
EM: Round [188] log likelihood: -8309.220174
EM: Round [189] log likelihood: -8309.217519
EM: Round [190] log likelihood: -8309.214873
EM: Round [191] log likelihood: -8309.212238
EM: Round [192] log likelihood: -8309.209612
EM: Round [193] log likelihood: -8309.206995
EM: Round [194] log likelihood: -8309.204389
EM: Round [195] log likelihood: -8309.201791
EM: Round [196] log likelihood: -8309.199203
EM: Round [197] log likelihood: -8309.196625
EM: Round [198] log likelihood: -8309.194055
EM: Round [199] log likelihood: -8309.191495
EM: Round [200] log likelihood: -8309.188944
EM: Round [201] log likelihood: -8309.186403
EM: Round [202] log likelihood: -8309.183870
EM: Round [203] log likelihood: -8309.181347
EM: Round [204] log likelihood: -8309.178832
EM: Round [205] log likelihood: -8309.176326
EM: Round [206] log likelihood: -8309.173829
EM: Round [207] log likelihood: -8309.171341
EM: Round [208] log likelihood: -8309.168862
EM: Round [209] log likelihood: -8309.166391
EM: Round [210] log likelihood: -8309.163929
EM: Round [211] log likelihood: -8309.161476
EM: Round [212] log likelihood: -8309.159031
EM: Round [213] log likelihood: -8309.156595
EM: Round [214] log likelihood: -8309.154167
EM: Round [215] log likelihood: -8309.151748
EM: Round [216] log likelihood: -8309.149337
EM: Round [217] log likelihood: -8309.146934
EM: Round [218] log likelihood: -8309.144539
EM: Round [219] log likelihood: -8309.142153
EM: Round [220] log likelihood: -8309.139775
EM: Round [221] log likelihood: -8309.137405
EM: Round [222] log likelihood: -8309.135043
EM: Round [223] log likelihood: -8309.132689
EM: Round [224] log likelihood: -8309.130342
EM: Round [225] log likelihood: -8309.128004
EM: Round [226] log likelihood: -8309.125674
EM: Round [227] log likelihood: -8309.123352
EM: Round [228] log likelihood: -8309.121037
EM: Round [229] log likelihood: -8309.118730
EM: Round [230] log likelihood: -8309.116431
EM: Round [231] log likelihood: -8309.114140
EM: Round [232] log likelihood: -8309.111856
EM: Round [233] log likelihood: -8309.109579
EM: Round [234] log likelihood: -8309.107310
EM: Round [235] log likelihood: -8309.105049
EM: Round [236] log likelihood: -8309.102795
EM: Round [237] log likelihood: -8309.100549
EM: Round [238] log likelihood: -8309.098310
EM: Round [239] log likelihood: -8309.096078
EM: Round [240] log likelihood: -8309.093854
EM: Round [241] log likelihood: -8309.091636
EM: Round [242] log likelihood: -8309.089426
EM: Round [243] log likelihood: -8309.087223
EM: Round [244] log likelihood: -8309.085028
EM: Round [245] log likelihood: -8309.082839
EM: Round [246] log likelihood: -8309.080657
EM: Round [247] log likelihood: -8309.078483
EM: Round [248] log likelihood: -8309.076315
EM: Round [249] log likelihood: -8309.074155
EM: Round [250] log likelihood: -8309.072001
EM: Round [251] log likelihood: -8309.069854
EM: Round [252] log likelihood: -8309.067714
EM: Round [253] log likelihood: -8309.065580
EM: Round [254] log likelihood: -8309.063454
EM: Round [255] log likelihood: -8309.061334
EM: Round [256] log likelihood: -8309.059221
EM: Round [257] log likelihood: -8309.057114
EM: Round [258] log likelihood: -8309.055015
EM: Round [259] log likelihood: -8309.052921
EM: Round [260] log likelihood: -8309.050834
EM: Round [261] log likelihood: -8309.048754
EM: Round [262] log likelihood: -8309.046680
EM: Round [263] log likelihood: -8309.044613
EM: Round [264] log likelihood: -8309.042552
EM: Round [265] log likelihood: -8309.040498
EM: Round [266] log likelihood: -8309.038449
EM: Round [267] log likelihood: -8309.036408
EM: Round [268] log likelihood: -8309.034372
EM: Round [269] log likelihood: -8309.032343
EM: Round [270] log likelihood: -8309.030319
EM: Round [271] log likelihood: -8309.028302
EM: Round [272] log likelihood: -8309.026292
EM: Round [273] log likelihood: -8309.024287
EM: Round [274] log likelihood: -8309.022288
EM: Round [275] log likelihood: -8309.020296
EM: Round [276] log likelihood: -8309.018309
EM: Round [277] log likelihood: -8309.016329
EM: Round [278] log likelihood: -8309.014354
EM: Round [279] log likelihood: -8309.012386
EM: Round [280] log likelihood: -8309.010423
EM: Round [281] log likelihood: -8309.008466
EM: Round [282] log likelihood: -8309.006515
EM: Round [283] log likelihood: -8309.004570
EM: Round [284] log likelihood: -8309.002631
EM: Round [285] log likelihood: -8309.000697
EM: Round [286] log likelihood: -8308.998769
EM: Round [287] log likelihood: -8308.996847
EM: Round [288] log likelihood: -8308.994931
EM: Round [289] log likelihood: -8308.993020
EM: Round [290] log likelihood: -8308.991115
EM: Round [291] log likelihood: -8308.989215
EM: Round [292] log likelihood: -8308.987321
EM: Round [293] log likelihood: -8308.985433
EM: Round [294] log likelihood: -8308.983550
EM: Round [295] log likelihood: -8308.981672
EM: Round [296] log likelihood: -8308.979800
EM: Round [297] log likelihood: -8308.977934
EM: Round [298] log likelihood: -8308.976073
EM: Round [299] log likelihood: -8308.974217
EM: Round [300] log likelihood: -8308.972367
EM: Round [301] log likelihood: -8308.970522
EM: Round [302] log likelihood: -8308.968682
EM: Round [303] log likelihood: -8308.966848
EM: Round [304] log likelihood: -8308.965018
EM: Round [305] log likelihood: -8308.963194
EM: Round [306] log likelihood: -8308.961376
EM: Round [307] log likelihood: -8308.959562
EM: Round [308] log likelihood: -8308.957754
EM: Round [309] log likelihood: -8308.955951
EM: Round [310] log likelihood: -8308.954153
EM: Round [311] log likelihood: -8308.952360
EM: Round [312] log likelihood: -8308.950572
EM: Round [313] log likelihood: -8308.948789
EM: Round [314] log likelihood: -8308.947011
EM: Round [315] log likelihood: -8308.945238
EM: Round [316] log likelihood: -8308.943470
EM: Round [317] log likelihood: -8308.941707
EM: Round [318] log likelihood: -8308.939949
EM: Round [319] log likelihood: -8308.938196
EM: Round [320] log likelihood: -8308.936448
EM: Round [321] log likelihood: -8308.934704
EM: Round [322] log likelihood: -8308.932966
EM: Round [323] log likelihood: -8308.931232
EM: Round [324] log likelihood: -8308.929503
EM: Round [325] log likelihood: -8308.927779
EM: Round [326] log likelihood: -8308.926060
EM: Round [327] log likelihood: -8308.924345
EM: Round [328] log likelihood: -8308.922636
EM: Round [329] log likelihood: -8308.920930
EM: Round [330] log likelihood: -8308.919230
EM: Round [331] log likelihood: -8308.917534
EM: Round [332] log likelihood: -8308.915843
EM: Round [333] log likelihood: -8308.914156
EM: Round [334] log likelihood: -8308.912474
EM: Round [335] log likelihood: -8308.910797
EM: Round [336] log likelihood: -8308.909124
EM: Round [337] log likelihood: -8308.907455
EM: Round [338] log likelihood: -8308.905791
EM: Round [339] log likelihood: -8308.904132
EM: Round [340] log likelihood: -8308.902477
EM: Round [341] log likelihood: -8308.900827
EM: Round [342] log likelihood: -8308.899181
EM: Round [343] log likelihood: -8308.897539
EM: Round [344] log likelihood: -8308.895902
EM: Round [345] log likelihood: -8308.894269
EM: Round [346] log likelihood: -8308.892640
EM: Round [347] log likelihood: -8308.891016
EM: Round [348] log likelihood: -8308.889396
EM: Round [349] log likelihood: -8308.887781
EM: Round [350] log likelihood: -8308.886170
EM: Round [351] log likelihood: -8308.884563
EM: Round [352] log likelihood: -8308.882960
EM: Round [353] log likelihood: -8308.881361
EM: Round [354] log likelihood: -8308.879767
EM: Round [355] log likelihood: -8308.878177
EM: Round [356] log likelihood: -8308.876591
EM: Round [357] log likelihood: -8308.875009
EM: Round [358] log likelihood: -8308.873432
EM: Round [359] log likelihood: -8308.871858
EM: Round [360] log likelihood: -8308.870289
EM: Round [361] log likelihood: -8308.868723
EM: Round [362] log likelihood: -8308.867162
EM: Round [363] log likelihood: -8308.865605
EM: Round [364] log likelihood: -8308.864052
EM: Round [365] log likelihood: -8308.862503
EM: Round [366] log likelihood: -8308.860958
EM: Round [367] log likelihood: -8308.859416
EM: Round [368] log likelihood: -8308.857879
EM: Round [369] log likelihood: -8308.856346
EM: Round [370] log likelihood: -8308.854817
EM: Round [371] log likelihood: -8308.853291
EM: Round [372] log likelihood: -8308.851770
EM: Round [373] log likelihood: -8308.850252
EM: Round [374] log likelihood: -8308.848739
EM: Round [375] log likelihood: -8308.847229
EM: Round [376] log likelihood: -8308.845723
EM: Round [377] log likelihood: -8308.844221
EM: Round [378] log likelihood: -8308.842722
EM: Round [379] log likelihood: -8308.841228
EM: Round [380] log likelihood: -8308.839737
EM: Round [381] log likelihood: -8308.838250
EM: Round [382] log likelihood: -8308.836767
EM: Round [383] log likelihood: -8308.835287
EM: Round [384] log likelihood: -8308.833812
EM: Round [385] log likelihood: -8308.832340
EM: Round [386] log likelihood: -8308.830871
EM: Round [387] log likelihood: -8308.829407
EM: Round [388] log likelihood: -8308.827945
EM: Round [389] log likelihood: -8308.826488
EM: Round [390] log likelihood: -8308.825034
EM: Round [391] log likelihood: -8308.823584
EM: Round [392] log likelihood: -8308.822138
EM: Round [393] log likelihood: -8308.820695
EM: Round [394] log likelihood: -8308.819255
EM: Round [395] log likelihood: -8308.817820
EM: Round [396] log likelihood: -8308.816387
EM: Round [397] log likelihood: -8308.814959
EM: Round [398] log likelihood: -8308.813533
EM: Round [399] log likelihood: -8308.812112
EM: Round [400] log likelihood: -8308.810694
EM: Round [401] log likelihood: -8308.809279
EM: Round [402] log likelihood: -8308.807868
EM: Round [403] log likelihood: -8308.806460
EM: Round [404] log likelihood: -8308.805055
EM: Round [405] log likelihood: -8308.803655
EM: Round [406] log likelihood: -8308.802257
EM: Round [407] log likelihood: -8308.800863
EM: Round [408] log likelihood: -8308.799472
EM: Round [409] log likelihood: -8308.798085
EM: Round [410] log likelihood: -8308.796701
EM: Round [411] log likelihood: -8308.795320
EM: Round [412] log likelihood: -8308.793943
EM: Round [413] log likelihood: -8308.792569
EM: Round [414] log likelihood: -8308.791198
EM: Round [415] log likelihood: -8308.789831
EM: Round [416] log likelihood: -8308.788467
EM: Round [417] log likelihood: -8308.787106
EM: Round [418] log likelihood: -8308.785749
EM: Round [419] log likelihood: -8308.784394
EM: Round [420] log likelihood: -8308.783043
EM: Round [421] log likelihood: -8308.781696
EM: Round [422] log likelihood: -8308.780351
EM: Round [423] log likelihood: -8308.779010
EM: Round [424] log likelihood: -8308.777671
EM: Round [425] log likelihood: -8308.776336
EM: Round [426] log likelihood: -8308.775004
EM: Round [427] log likelihood: -8308.773676
EM: Round [428] log likelihood: -8308.772350
EM: Round [429] log likelihood: -8308.771028
EM: Round [430] log likelihood: -8308.769708
EM: Round [431] log likelihood: -8308.768392
EM: Round [432] log likelihood: -8308.767079
EM: Round [433] log likelihood: -8308.765769
EM: Round [434] log likelihood: -8308.764462
EM: Round [435] log likelihood: -8308.763158
EM: Round [436] log likelihood: -8308.761857
EM: Round [437] log likelihood: -8308.760560
EM: Round [438] log likelihood: -8308.759265
EM: Round [439] log likelihood: -8308.757973
EM: Round [440] log likelihood: -8308.756684
EM: Round [441] log likelihood: -8308.755399
EM: Round [442] log likelihood: -8308.754116
EM: Round [443] log likelihood: -8308.752836
EM: Round [444] log likelihood: -8308.751559
EM: Round [445] log likelihood: -8308.750285
EM: Round [446] log likelihood: -8308.749015
EM: Round [447] log likelihood: -8308.747747
EM: Round [448] log likelihood: -8308.746481
EM: Round [449] log likelihood: -8308.745219
EM: Round [450] log likelihood: -8308.743960
EM: Round [451] log likelihood: -8308.742704
EM: Round [452] log likelihood: -8308.741450
EM: Round [453] log likelihood: -8308.740200
EM: Round [454] log likelihood: -8308.738952
EM: Round [455] log likelihood: -8308.737707
EM: Round [456] log likelihood: -8308.736465
EM: Round [457] log likelihood: -8308.735226
EM: Round [458] log likelihood: -8308.733989
EM: Round [459] log likelihood: -8308.732756
EM: Round [460] log likelihood: -8308.731525
EM: Round [461] log likelihood: -8308.730297
EM: Round [462] log likelihood: -8308.729072
EM: Round [463] log likelihood: -8308.727849
EM: Round [464] log likelihood: -8308.726630
EM: Round [465] log likelihood: -8308.725413
EM: Round [466] log likelihood: -8308.724199
EM: Round [467] log likelihood: -8308.722987
EM: Round [468] log likelihood: -8308.721778
EM: Round [469] log likelihood: -8308.720572
EM: Round [470] log likelihood: -8308.719369
EM: Round [471] log likelihood: -8308.718168
EM: Round [472] log likelihood: -8308.716971
EM: Round [473] log likelihood: -8308.715775
EM: Round [474] log likelihood: -8308.714583
EM: Round [475] log likelihood: -8308.713393
EM: Round [476] log likelihood: -8308.712206
EM: Round [477] log likelihood: -8308.711021
EM: Round [478] log likelihood: -8308.709839
EM: Round [479] log likelihood: -8308.708660
EM: Round [480] log likelihood: -8308.707483
EM: Round [481] log likelihood: -8308.706309
EM: Round [482] log likelihood: -8308.705137
EM: Round [483] log likelihood: -8308.703968
EM: Round [484] log likelihood: -8308.702802
EM: Round [485] log likelihood: -8308.701638
EM: Round [486] log likelihood: -8308.700477
EM: Round [487] log likelihood: -8308.699318
EM: Round [488] log likelihood: -8308.698162
EM: Round [489] log likelihood: -8308.697008
EM: Round [490] log likelihood: -8308.695857
EM: Round [491] log likelihood: -8308.694709
EM: Round [492] log likelihood: -8308.693563
EM: Round [493] log likelihood: -8308.692419
EM: Round [494] log likelihood: -8308.691278
EM: Round [495] log likelihood: -8308.690139
EM: Round [496] log likelihood: -8308.689003
EM: Round [497] log likelihood: -8308.687870
EM: Round [498] log likelihood: -8308.686738
EM: Round [499] log likelihood: -8308.685610
EM: Round [500] log likelihood: -8308.684483
EM: Round [501] log likelihood: -8308.683360
EM: Round [502] log likelihood: -8308.682238
EM: Round [503] log likelihood: -8308.681119
EM: Round [504] log likelihood: -8308.680003
EM: Round [505] log likelihood: -8308.678888
EM: Round [506] log likelihood: -8308.677777
EM: Round [507] log likelihood: -8308.676667
EM: Round [508] log likelihood: -8308.675560
EM: Round [509] log likelihood: -8308.674456
EM: Round [510] log likelihood: -8308.673353
EM: Round [511] log likelihood: -8308.672254
EM: Round [512] log likelihood: -8308.671156
EM: Round [513] log likelihood: -8308.670061
EM: Round [514] log likelihood: -8308.668968
EM: Round [515] log likelihood: -8308.667877
EM: Round [516] log likelihood: -8308.666789
EM: Round [517] log likelihood: -8308.665703
EM: Round [518] log likelihood: -8308.664620
EM: Round [519] log likelihood: -8308.663538
EM: Round [520] log likelihood: -8308.662459
EM: Round [521] log likelihood: -8308.661383
EM: Round [522] log likelihood: -8308.660308
EM: Round [523] log likelihood: -8308.659236
EM: Round [524] log likelihood: -8308.658166
EM: Round [525] log likelihood: -8308.657098
EM: Round [526] log likelihood: -8308.656033
EM: Round [527] log likelihood: -8308.654970
EM: Round [528] log likelihood: -8308.653909
EM: Round [529] log likelihood: -8308.652850
EM: Round [530] log likelihood: -8308.651794
EM: Round [531] log likelihood: -8308.650739
EM: Round [532] log likelihood: -8308.649687
EM: Round [533] log likelihood: -8308.648638
EM: Round [534] log likelihood: -8308.647590
EM: Round [535] log likelihood: -8308.646544
EM: Round [536] log likelihood: -8308.645501
EM: Round [537] log likelihood: -8308.644460
EM: Round [538] log likelihood: -8308.643421
EM: Round [539] log likelihood: -8308.642384
EM: Round [540] log likelihood: -8308.641349
EM: Round [541] log likelihood: -8308.640317
EM: Round [542] log likelihood: -8308.639286
EM: Round [543] log likelihood: -8308.638258
EM: Round [544] log likelihood: -8308.637232
EM: Round [545] log likelihood: -8308.636208
EM: Round [546] log likelihood: -8308.635186
EM: Round [547] log likelihood: -8308.634166
EM: Round [548] log likelihood: -8308.633149
EM: Round [549] log likelihood: -8308.632133
EM: Round [550] log likelihood: -8308.631119
EM: Round [551] log likelihood: -8308.630108
EM: Round [552] log likelihood: -8308.629099
EM: Round [553] log likelihood: -8308.628091
EM: Round [554] log likelihood: -8308.627086
EM: Round [555] log likelihood: -8308.626083
EM: Round [556] log likelihood: -8308.625082
EM: Round [557] log likelihood: -8308.624083
EM: Round [558] log likelihood: -8308.623086
EM: Round [559] log likelihood: -8308.622091
EM: Round [560] log likelihood: -8308.621098
EM: Round [561] log likelihood: -8308.620107
EM: Round [562] log likelihood: -8308.619118
EM: Round [563] log likelihood: -8308.618131
EM: Round [564] log likelihood: -8308.617146
EM: Round [565] log likelihood: -8308.616163
EM: Round [566] log likelihood: -8308.615182
EM: Round [567] log likelihood: -8308.614203
EM: Round [568] log likelihood: -8308.613226
EM: Round [569] log likelihood: -8308.612250
EM: Round [570] log likelihood: -8308.611277
EM: Round [571] log likelihood: -8308.610306
EM: Round [572] log likelihood: -8308.609337
EM: Round [573] log likelihood: -8308.608370
EM: Round [574] log likelihood: -8308.607404
EM: Round [575] log likelihood: -8308.606441
EM: Round [576] log likelihood: -8308.605479
EM: Round [577] log likelihood: -8308.604520
EM: Round [578] log likelihood: -8308.603562
EM: Round [579] log likelihood: -8308.602607
EM: Round [580] log likelihood: -8308.601653
EM: Round [581] log likelihood: -8308.600701
EM: Round [582] log likelihood: -8308.599751
EM: Round [583] log likelihood: -8308.598803
EM: Round [584] log likelihood: -8308.597857
EM: Round [585] log likelihood: -8308.596912
EM: Round [586] log likelihood: -8308.595970
EM: Round [587] log likelihood: -8308.595029
EM: Round [588] log likelihood: -8308.594090
EM: Round [589] log likelihood: -8308.593153
EM: Round [590] log likelihood: -8308.592218
EM: Round [591] log likelihood: -8308.591285
EM: Round [592] log likelihood: -8308.590354
EM: Round [593] log likelihood: -8308.589424
EM: Round [594] log likelihood: -8308.588497
EM: Round [595] log likelihood: -8308.587571
EM: Round [596] log likelihood: -8308.586647
EM: Round [597] log likelihood: -8308.585724
EM: Round [598] log likelihood: -8308.584804
EM: Round [599] log likelihood: -8308.583885
EM: Round [600] log likelihood: -8308.582968
EM: Round [601] log likelihood: -8308.582053
EM: Round [602] log likelihood: -8308.581140
EM: Round [603] log likelihood: -8308.580229
EM: Round [604] log likelihood: -8308.579319
EM: Round [605] log likelihood: -8308.578411
EM: Round [606] log likelihood: -8308.577505
EM: Round [607] log likelihood: -8308.576600
EM: Round [608] log likelihood: -8308.575698
EM: Round [609] log likelihood: -8308.574797
EM: Round [610] log likelihood: -8308.573898
EM: Round [611] log likelihood: -8308.573000
EM: Round [612] log likelihood: -8308.572105
EM: Round [613] log likelihood: -8308.571211
EM: Round [614] log likelihood: -8308.570319
EM: Round [615] log likelihood: -8308.569428
EM: Round [616] log likelihood: -8308.568539
EM: Round [617] log likelihood: -8308.567652
EM: Round [618] log likelihood: -8308.566767
EM: Round [619] log likelihood: -8308.565883
EM: Round [620] log likelihood: -8308.565001
EM: Round [621] log likelihood: -8308.564121
EM: Round [622] log likelihood: -8308.563242
EM: Round [623] log likelihood: -8308.562366
EM: Round [624] log likelihood: -8308.561490
EM: Round [625] log likelihood: -8308.560617
EM: Round [626] log likelihood: -8308.559745
EM: Round [627] log likelihood: -8308.558875
EM: Round [628] log likelihood: -8308.558006
EM: Round [629] log likelihood: -8308.557139
EM: Round [630] log likelihood: -8308.556274
EM: Round [631] log likelihood: -8308.555411
EM: Round [632] log likelihood: -8308.554549
EM: Round [633] log likelihood: -8308.553688
EM: Round [634] log likelihood: -8308.552830
EM: Round [635] log likelihood: -8308.551973
EM: Round [636] log likelihood: -8308.551117
EM: Round [637] log likelihood: -8308.550264
EM: Round [638] log likelihood: -8308.549411
EM: Round [639] log likelihood: -8308.548561
EM: Round [640] log likelihood: -8308.547712
EM: Round [641] log likelihood: -8308.546865
EM: Round [642] log likelihood: -8308.546019
EM: Round [643] log likelihood: -8308.545175
EM: Round [644] log likelihood: -8308.544332
EM: Round [645] log likelihood: -8308.543491
EM: Round [646] log likelihood: -8308.542652
EM: Round [647] log likelihood: -8308.541814
EM: Round [648] log likelihood: -8308.540978
EM: Round [649] log likelihood: -8308.540143
EM: Round [650] log likelihood: -8308.539310
EM: Round [651] log likelihood: -8308.538478
EM: Round [652] log likelihood: -8308.537648
EM: Round [653] log likelihood: -8308.536820
EM: Round [654] log likelihood: -8308.535993
EM: Round [655] log likelihood: -8308.535168
EM: Round [656] log likelihood: -8308.534344
EM: Round [657] log likelihood: -8308.533521
EM: Round [658] log likelihood: -8308.532701
EM: Round [659] log likelihood: -8308.531881
EM: Round [660] log likelihood: -8308.531064
EM: Round [661] log likelihood: -8308.530247
EM: Round [662] log likelihood: -8308.529433
EM: Round [663] log likelihood: -8308.528620
EM: Round [664] log likelihood: -8308.527808
EM: Round [665] log likelihood: -8308.526998
EM: Round [666] log likelihood: -8308.526189
EM: Round [667] log likelihood: -8308.525382
EM: Round [668] log likelihood: -8308.524576
EM: Round [669] log likelihood: -8308.523772
EM: Round [670] log likelihood: -8308.522969
EM: Round [671] log likelihood: -8308.522168
EM: Round [672] log likelihood: -8308.521368
EM: Round [673] log likelihood: -8308.520570
EM: Round [674] log likelihood: -8308.519773
EM: Round [675] log likelihood: -8308.518978
EM: Round [676] log likelihood: -8308.518184
EM: Round [677] log likelihood: -8308.517392
EM: Round [678] log likelihood: -8308.516601
EM: Round [679] log likelihood: -8308.515811
EM: Round [680] log likelihood: -8308.515023
EM: Round [681] log likelihood: -8308.514236
EM: Round [682] log likelihood: -8308.513451
EM: Round [683] log likelihood: -8308.512667
EM: Round [684] log likelihood: -8308.511885
EM: Round [685] log likelihood: -8308.511104
EM: Round [686] log likelihood: -8308.510324
EM: Round [687] log likelihood: -8308.509546
EM: Round [688] log likelihood: -8308.508770
EM: Round [689] log likelihood: -8308.507994
EM: Round [690] log likelihood: -8308.507220
EM: Round [691] log likelihood: -8308.506448
EM: Round [692] log likelihood: -8308.505677
EM: Round [693] log likelihood: -8308.504907
EM: Round [694] log likelihood: -8308.504139
EM: Round [695] log likelihood: -8308.503372
EM: Round [696] log likelihood: -8308.502606
EM: Round [697] log likelihood: -8308.501842
EM: Round [698] log likelihood: -8308.501080
EM: Round [699] log likelihood: -8308.500318
EM: Round [700] log likelihood: -8308.499558
EM: Round [701] log likelihood: -8308.498799
EM: Round [702] log likelihood: -8308.498042
EM: Round [703] log likelihood: -8308.497286
EM: Round [704] log likelihood: -8308.496532
EM: Round [705] log likelihood: -8308.495778
EM: Round [706] log likelihood: -8308.495027
EM: Round [707] log likelihood: -8308.494276
EM: Round [708] log likelihood: -8308.493527
EM: Round [709] log likelihood: -8308.492779
EM: Round [710] log likelihood: -8308.492033
EM: Round [711] log likelihood: -8308.491287
EM: Round [712] log likelihood: -8308.490544
EM: Round [713] log likelihood: -8308.489801
EM: Round [714] log likelihood: -8308.489060
EM: Round [715] log likelihood: -8308.488320
EM: Round [716] log likelihood: -8308.487582
EM: Round [717] log likelihood: -8308.486844
EM: Round [718] log likelihood: -8308.486108
EM: Round [719] log likelihood: -8308.485374
EM: Round [720] log likelihood: -8308.484640
EM: Round [721] log likelihood: -8308.483908
EM: Round [722] log likelihood: -8308.483178
EM: Round [723] log likelihood: -8308.482448
EM: Round [724] log likelihood: -8308.481720
EM: Round [725] log likelihood: -8308.480993
EM: Round [726] log likelihood: -8308.480268
EM: Round [727] log likelihood: -8308.479543
EM: Round [728] log likelihood: -8308.478820
EM: Round [729] log likelihood: -8308.478099
EM: Round [730] log likelihood: -8308.477378
EM: Round [731] log likelihood: -8308.476659
EM: Round [732] log likelihood: -8308.475941
EM: Round [733] log likelihood: -8308.475224
EM: Round [734] log likelihood: -8308.474509
EM: Round [735] log likelihood: -8308.473795
EM: Round [736] log likelihood: -8308.473082
EM: Round [737] log likelihood: -8308.472370
EM: Round [738] log likelihood: -8308.471660
EM: Round [739] log likelihood: -8308.470951
EM: Round [740] log likelihood: -8308.470243
EM: Round [741] log likelihood: -8308.469536
EM: Round [742] log likelihood: -8308.468831
EM: Round [743] log likelihood: -8308.468126
EM: Round [744] log likelihood: -8308.467423
EM: Round [745] log likelihood: -8308.466722
EM: Round [746] log likelihood: -8308.466021
EM: Round [747] log likelihood: -8308.465322
EM: Round [748] log likelihood: -8308.464624
EM: Round [749] log likelihood: -8308.463927
EM: Round [750] log likelihood: -8308.463231
EM: Round [751] log likelihood: -8308.462536
EM: Round [752] log likelihood: -8308.461843
EM: Round [753] log likelihood: -8308.461151
EM: Round [754] log likelihood: -8308.460460
EM: Round [755] log likelihood: -8308.459770
EM: Round [756] log likelihood: -8308.459082
EM: Round [757] log likelihood: -8308.458395
EM: Round [758] log likelihood: -8308.457708
EM: Round [759] log likelihood: -8308.457024
EM: Round [760] log likelihood: -8308.456340
EM: Round [761] log likelihood: -8308.455657
EM: Round [762] log likelihood: -8308.454976
EM: Round [763] log likelihood: -8308.454296
EM: Round [764] log likelihood: -8308.453616
EM: Round [765] log likelihood: -8308.452939
EM: Round [766] log likelihood: -8308.452262
EM: Round [767] log likelihood: -8308.451586
EM: Round [768] log likelihood: -8308.450912
EM: Round [769] log likelihood: -8308.450239
EM: Round [770] log likelihood: -8308.449566
EM: Round [771] log likelihood: -8308.448896
EM: Round [772] log likelihood: -8308.448226
EM: Round [773] log likelihood: -8308.447557
EM: Round [774] log likelihood: -8308.446890
EM: Round [775] log likelihood: -8308.446223
EM: Round [776] log likelihood: -8308.445558
EM: Round [777] log likelihood: -8308.444894
EM: Round [778] log likelihood: -8308.444231
EM: Round [779] log likelihood: -8308.443569
EM: Round [780] log likelihood: -8308.442908
EM: Round [781] log likelihood: -8308.442249
EM: Round [782] log likelihood: -8308.441590
EM: Round [783] log likelihood: -8308.440933
EM: Round [784] log likelihood: -8308.440277
EM: Round [785] log likelihood: -8308.439621
EM: Round [786] log likelihood: -8308.438967
EM: Round [787] log likelihood: -8308.438314
EM: Round [788] log likelihood: -8308.437663
EM: Round [789] log likelihood: -8308.437012
EM: Round [790] log likelihood: -8308.436362
EM: Round [791] log likelihood: -8308.435714
EM: Round [792] log likelihood: -8308.435066
EM: Round [793] log likelihood: -8308.434420
EM: Round [794] log likelihood: -8308.433775
EM: Round [795] log likelihood: -8308.433131
EM: Round [796] log likelihood: -8308.432488
EM: Round [797] log likelihood: -8308.431846
EM: Round [798] log likelihood: -8308.431205
EM: Round [799] log likelihood: -8308.430565
EM: Round [800] log likelihood: -8308.429926
EM: Round [801] log likelihood: -8308.429288
EM: Round [802] log likelihood: -8308.428652
EM: Round [803] log likelihood: -8308.428016
EM: Round [804] log likelihood: -8308.427382
EM: Round [805] log likelihood: -8308.426748
EM: Round [806] log likelihood: -8308.426116
EM: Round [807] log likelihood: -8308.425485
EM: Round [808] log likelihood: -8308.424854
EM: Round [809] log likelihood: -8308.424225
EM: Round [810] log likelihood: -8308.423597
EM: Round [811] log likelihood: -8308.422970
EM: Round [812] log likelihood: -8308.422344
EM: Round [813] log likelihood: -8308.421719
EM: Round [814] log likelihood: -8308.421095
EM: Round [815] log likelihood: -8308.420472
EM: Round [816] log likelihood: -8308.419850
EM: Round [817] log likelihood: -8308.419229
EM: Round [818] log likelihood: -8308.418609
EM: Round [819] log likelihood: -8308.417990
EM: Round [820] log likelihood: -8308.417373
EM: Round [821] log likelihood: -8308.416756
EM: Round [822] log likelihood: -8308.416140
EM: Round [823] log likelihood: -8308.415525
EM: Round [824] log likelihood: -8308.414912
EM: Round [825] log likelihood: -8308.414299
EM: Round [826] log likelihood: -8308.413687
EM: Round [827] log likelihood: -8308.413077
EM: Round [828] log likelihood: -8308.412467
EM: Round [829] log likelihood: -8308.411858
EM: Round [830] log likelihood: -8308.411251
EM: Round [831] log likelihood: -8308.410644
EM: Round [832] log likelihood: -8308.410038
EM: Round [833] log likelihood: -8308.409434
EM: Round [834] log likelihood: -8308.408830
EM: Round [835] log likelihood: -8308.408227
EM: Round [836] log likelihood: -8308.407626
EM: Round [837] log likelihood: -8308.407025
EM: Round [838] log likelihood: -8308.406425
EM: Round [839] log likelihood: -8308.405827
EM: Round [840] log likelihood: -8308.405229
EM: Round [841] log likelihood: -8308.404632
EM: Round [842] log likelihood: -8308.404036
EM: Round [843] log likelihood: -8308.403441
EM: Round [844] log likelihood: -8308.402848
EM: Round [845] log likelihood: -8308.402255
EM: Round [846] log likelihood: -8308.401663
EM: Round [847] log likelihood: -8308.401072
EM: Round [848] log likelihood: -8308.400482
EM: Round [849] log likelihood: -8308.399893
EM: Round [850] log likelihood: -8308.399305
EM: Round [851] log likelihood: -8308.398718
EM: Round [852] log likelihood: -8308.398132
EM: Round [853] log likelihood: -8308.397546
EM: Round [854] log likelihood: -8308.396962
EM: Round [855] log likelihood: -8308.396379
EM: Round [856] log likelihood: -8308.395797
EM: Round [857] log likelihood: -8308.395215
EM: Round [858] log likelihood: -8308.394635
EM: Round [859] log likelihood: -8308.394055
EM: Round [860] log likelihood: -8308.393477
EM: Round [861] log likelihood: -8308.392899
EM: Round [862] log likelihood: -8308.392322
EM: Round [863] log likelihood: -8308.391746
EM: Round [864] log likelihood: -8308.391172
EM: Round [865] log likelihood: -8308.390598
EM: Round [866] log likelihood: -8308.390025
EM: Round [867] log likelihood: -8308.389453
EM: Round [868] log likelihood: -8308.388881
EM: Round [869] log likelihood: -8308.388311
EM: Round [870] log likelihood: -8308.387742
EM: Round [871] log likelihood: -8308.387173
EM: Round [872] log likelihood: -8308.386606
EM: Round [873] log likelihood: -8308.386039
EM: Round [874] log likelihood: -8308.385474
EM: Round [875] log likelihood: -8308.384909
EM: Round [876] log likelihood: -8308.384345
EM: Round [877] log likelihood: -8308.383782
EM: Round [878] log likelihood: -8308.383220
EM: Round [879] log likelihood: -8308.382659
EM: Round [880] log likelihood: -8308.382099
EM: Round [881] log likelihood: -8308.381539
EM: Round [882] log likelihood: -8308.380981
EM: Round [883] log likelihood: -8308.380423
EM: Round [884] log likelihood: -8308.379867
EM: Round [885] log likelihood: -8308.379311
EM: Round [886] log likelihood: -8308.378756
EM: Round [887] log likelihood: -8308.378202
EM: Round [888] log likelihood: -8308.377649
EM: Round [889] log likelihood: -8308.377097
EM: Round [890] log likelihood: -8308.376545
EM: Round [891] log likelihood: -8308.375995
EM: Round [892] log likelihood: -8308.375445
EM: Round [893] log likelihood: -8308.374896
EM: Round [894] log likelihood: -8308.374349
EM: Round [895] log likelihood: -8308.373802
EM: Round [896] log likelihood: -8308.373255
EM: Round [897] log likelihood: -8308.372710
EM: Round [898] log likelihood: -8308.372166
EM: Round [899] log likelihood: -8308.371622
EM: Round [900] log likelihood: -8308.371080
EM: Round [901] log likelihood: -8308.370538
EM: Round [902] log likelihood: -8308.369997
EM: Round [903] log likelihood: -8308.369457
EM: Round [904] log likelihood: -8308.368917
EM: Round [905] log likelihood: -8308.368379
EM: Round [906] log likelihood: -8308.367841
EM: Round [907] log likelihood: -8308.367305
EM: Round [908] log likelihood: -8308.366769
EM: Round [909] log likelihood: -8308.366234
EM: Round [910] log likelihood: -8308.365700
EM: Round [911] log likelihood: -8308.365166
EM: Round [912] log likelihood: -8308.364634
EM: Round [913] log likelihood: -8308.364102
EM: Round [914] log likelihood: -8308.363571
EM: Round [915] log likelihood: -8308.363041
EM: Round [916] log likelihood: -8308.362512
EM: Round [917] log likelihood: -8308.361984
EM: Round [918] log likelihood: -8308.361456
EM: Round [919] log likelihood: -8308.360930
EM: Round [920] log likelihood: -8308.360404
EM: Round [921] log likelihood: -8308.359879
EM: Round [922] log likelihood: -8308.359355
EM: Round [923] log likelihood: -8308.358831
EM: Round [924] log likelihood: -8308.358309
EM: Round [925] log likelihood: -8308.357787
EM: Round [926] log likelihood: -8308.357266
EM: Round [927] log likelihood: -8308.356746
EM: Round [928] log likelihood: -8308.356227
EM: Round [929] log likelihood: -8308.355708
EM: Round [930] log likelihood: -8308.355190
EM: Round [931] log likelihood: -8308.354673
EM: Round [932] log likelihood: -8308.354157
EM: Round [933] log likelihood: -8308.353642
EM: Round [934] log likelihood: -8308.353128
EM: Round [935] log likelihood: -8308.352614
EM: Round [936] log likelihood: -8308.352101
EM: Round [937] log likelihood: -8308.351589
EM: Round [938] log likelihood: -8308.351078
EM: Round [939] log likelihood: -8308.350567
EM: Round [940] log likelihood: -8308.350057
EM: Round [941] log likelihood: -8308.349549
EM: Round [942] log likelihood: -8308.349040
EM: Round [943] log likelihood: -8308.348533
EM: Round [944] log likelihood: -8308.348026
EM: Round [945] log likelihood: -8308.347521
EM: Round [946] log likelihood: -8308.347016
EM: Round [947] log likelihood: -8308.346512
EM: Round [948] log likelihood: -8308.346008
EM: Round [949] log likelihood: -8308.345505
EM: Round [950] log likelihood: -8308.345004
EM: Round [951] log likelihood: -8308.344502
EM: Round [952] log likelihood: -8308.344002
EM: Round [953] log likelihood: -8308.343503
EM: Round [954] log likelihood: -8308.343004
EM: Round [955] log likelihood: -8308.342506
EM: Round [956] log likelihood: -8308.342008
EM: Round [957] log likelihood: -8308.341512
EM: Round [958] log likelihood: -8308.341016
EM: Round [959] log likelihood: -8308.340521
EM: Round [960] log likelihood: -8308.340027
EM: Round [961] log likelihood: -8308.339534
EM: Round [962] log likelihood: -8308.339041
EM: Round [963] log likelihood: -8308.338549
EM: Round [964] log likelihood: -8308.338058
EM: Round [965] log likelihood: -8308.337567
EM: Round [966] log likelihood: -8308.337078
EM: Round [967] log likelihood: -8308.336589
EM: Round [968] log likelihood: -8308.336100
EM: Round [969] log likelihood: -8308.335613
EM: Round [970] log likelihood: -8308.335126
EM: Round [971] log likelihood: -8308.334640
EM: Round [972] log likelihood: -8308.334155
EM: Round [973] log likelihood: -8308.333671
EM: Round [974] log likelihood: -8308.333187
EM: Round [975] log likelihood: -8308.332704
EM: Round [976] log likelihood: -8308.332222
EM: Round [977] log likelihood: -8308.331740
EM: Round [978] log likelihood: -8308.331259
EM: Round [979] log likelihood: -8308.330779
EM: Round [980] log likelihood: -8308.330300
EM: Round [981] log likelihood: -8308.329821
EM: Round [982] log likelihood: -8308.329343
EM: Round [983] log likelihood: -8308.328866
EM: Round [984] log likelihood: -8308.328390
EM: Round [985] log likelihood: -8308.327914
EM: Round [986] log likelihood: -8308.327439
EM: Round [987] log likelihood: -8308.326965
EM: Round [988] log likelihood: -8308.326491
EM: Round [989] log likelihood: -8308.326018
EM: Round [990] log likelihood: -8308.325546
EM: Round [991] log likelihood: -8308.325075
EM: Round [992] log likelihood: -8308.324604
EM: Round [993] log likelihood: -8308.324134
EM: Round [994] log likelihood: -8308.323665
EM: Round [995] log likelihood: -8308.323196
EM: Round [996] log likelihood: -8308.322728
EM: Round [997] log likelihood: -8308.322261
EM: Round [998] log likelihood: -8308.321795
EM: Round [999] log likelihood: -8308.321329
EM: Round [1000] log likelihood: -8308.320864
EM: Round [1001] log likelihood: -8308.320400
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_EM_runner.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/EM_adj_counts.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
-total frags in /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz: 296283337
Execution Time = 6.06 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1_1.fastp.fastq.gz /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/add_FFPM.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa --gtf /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf  > /tmp/nxf.25Ed2bCW7h/fi_workdir/microH.dat
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/find_microhomologies_by_kmer_matches.pl --fasta /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fa --gtf /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gtf  > /tmp/nxf.25Ed2bCW7h/fi_workdir/microH.dat
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/microH.dat.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.25Ed2bCW7h/fi_workdir/microH.dat /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/misc/append_microH_distance.py /tmp/nxf.25Ed2bCW7h/fi_workdir/microH.dat /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM  >  /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/append_microH_info.ok
Running: cp /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.tsv
Execution Time = 0.00 minutes. CMD: cp /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.post_blast_and_promiscuity_filter.annot_filter.pass.EMadj.FFPM.wMicroH /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.tsv
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/cp_final.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/column_exclusions.pl /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.tsv JunctionReads,SpanningFrags,CounterFusionLeftReads,CounterFusionRightReads  > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/final.abridged.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.25Ed2bCW7h --json_outfile /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00087_B23WHTKLT4_1
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/util/create_fusion_inspector_igvjs.py --fusion_inspector_directory /tmp/nxf.25Ed2bCW7h --json_outfile /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fusion_inspector_web.json --file_prefix tih_rna_sample_00087_B23WHTKLT4_1
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/create_fi_igvjs.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00087_B23WHTKLT4_1 --html_output /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fusion_inspector_web.html
Warning - not locating file: /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.gmap_trinity_GG.fusions.gff3.bed
Execution Time = 0.01 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/fusion-reports/create_fusion_report.py --html_template /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_report_html_template/igvjs_fusion.html --fusions_json /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fusion_inspector_web.json --input_file_prefix tih_rna_sample_00087_B23WHTKLT4_1 --html_output /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.fusion_inspector_web.html
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/fusion_reports_html.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/FusionAnnotator --annotate /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv  --genome_lib_dir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv.annotated 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/fusion_annotator.ok
Running: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000284639.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000253778.1]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000254633.2]
WARNING, no entry stored in dbm for [ENSG00000260593.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000249252.5]
WARNING, no entry stored in dbm for [ENSG00000248360.7]
WARNING, no entry stored in dbm for [ENSG00000249252.5]
WARNING, no entry stored in dbm for [ENSG00000248360.7]
Execution Time = 0.00 minutes. CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv.annotated  --genome_lib_dir /tmp/nxf.25Ed2bCW7h/ctat_genome_lib_build_dir > /tmp/nxf.25Ed2bCW7h/tih_rna_sample_00087_B23WHTKLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect 
Running: touch /tmp/nxf.25Ed2bCW7h/chckpts_dir/fusion_coding_region_effect.ok
ls: cannot access 'IGV_inputs': No such file or directory