[W::hts_idx_load3] The index file is older than the data file: 659_cRa-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	420169365
Known Splicing Events:	416376151
Partial Novel Splicing Events:	1755733
Novel Splicing Events:	1907756
Filtered Splicing Events:	129725

Total splicing  Junctions:	476486
Known Splicing Junctions:	256970
Partial Novel Splicing Junctions:	122681
Novel Splicing Junctions:	96835

===================================================================
Create BED file ...
Create Interact file ...