File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/1c7a71c9eabae38c89a5ea10b1e358/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (tih_rna_sample_00121_B23WHTKLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/1c7a71c9eabae38c89a5ea10b1e358/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/1c7a71c9eabae38c89a5ea10b1e358/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9a9ba4d4b900f249e789c9841bef3f/tih_rna_sample_00121_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/fb47248cf90d9ce6412483ab5e02dd/tih_rna_sample_00121_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 329961772
[W::hts_idx_load3] The index file is older than the data file: tih_rna_sample_00121_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	329961772
Known Splicing Events:	326643501
Partial Novel Splicing Events:	1889099
Novel Splicing Events:	1298579
Filtered Splicing Events:	130593

Total splicing  Junctions:	481351
Known Splicing Junctions:	259289
Partial Novel Splicing Junctions:	126303
Novel Splicing Junctions:	95759

===================================================================
Create BED file ...
Create Interact file ...