File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/6a698d84cb063693c718e0d3ffb7bf/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:09:42
                             Started mapping on |	Jun 08 10:16:21
                                    Finished on |	Jun 08 11:19:58
       Mapping speed, Million of reads per hour |	278.50

                          Number of input reads |	295286729
                      Average input read length |	242
                                    UNIQUE READS:
                   Uniquely mapped reads number |	281470297
                        Uniquely mapped reads % |	95.32%
                          Average mapped length |	241.26
                       Number of splices: Total |	330917597
            Number of splices: Annotated (sjdb) |	326001490
                       Number of splices: GT/AG |	326419864
                       Number of splices: GC/AG |	2203999
                       Number of splices: AT/AC |	272656
               Number of splices: Non-canonical |	2021078
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.05%
                        Deletion average length |	2.25
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	11067882
             % of reads mapped to multiple loci |	3.75%
        Number of reads mapped to too many loci |	501065
             % of reads mapped to too many loci |	0.17%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2047525
                 % of reads unmapped: too short |	0.69%
                Number of reads unmapped: other |	199960
                     % of reads unmapped: other |	0.07%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%