File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/81c73224bc1d01742213f8d0991d34/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:46:20
                             Started mapping on |	Jun 08 09:52:52
                                    Finished on |	Jun 08 10:43:59
       Mapping speed, Million of reads per hour |	347.15

                          Number of input reads |	295753751
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	286063873
                        Uniquely mapped reads % |	96.72%
                          Average mapped length |	243.34
                       Number of splices: Total |	309488035
            Number of splices: Annotated (sjdb) |	302041812
                       Number of splices: GT/AG |	304919232
                       Number of splices: GC/AG |	2101129
                       Number of splices: AT/AC |	226845
               Number of splices: Non-canonical |	2240829
                      Mismatch rate per base, % |	0.28%
                         Deletion rate per base |	0.04%
                        Deletion average length |	2.28
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.63
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7086416
             % of reads mapped to multiple loci |	2.40%
        Number of reads mapped to too many loci |	172404
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2200502
                 % of reads unmapped: too short |	0.74%
                Number of reads unmapped: other |	230556
                     % of reads unmapped: other |	0.08%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%