Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/b1e5bcf28c9ef825759dc24244dce9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/596dc83cd135ae3e53e2e69434618e/659_cfy-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/b1e5bcf28c9ef825759dc24244dce9/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293484886
unpaired = 4317681
MERGED PAIRED END READS = 293484886
MATES PROCESSED = 591287453
TOTAL READS     = 297802567
DISTINCT READS  = 8.48936e+07
DISTINCT COUNTS = 834
MAX COUNT       = 742919
COUNTS OF 1     = 2.52377e+07
MAX TERMS       = 100
OBSERVED COUNTS (742920)
1	25237748
2	17550587
3	12899902
4	9112423
5	6233077
6	4180745
7	2796786
8	1876637
9	1274418
10	883566
11	624069
12	449740
13	331978
14	248564
15	190796
16	148792
17	118222
18	95253
19	76851
20	63742
21	53774
22	45395
23	38748
24	33105
25	28765
26	25216
27	22114
28	19615
29	17278
30	15487
31	13980
32	12431
33	11337
34	10240
35	9249
36	8353
37	7800
38	7199
39	6524
40	6099
41	5567
42	5077
43	4797
44	4393
45	3971
46	3803
47	3573
48	3298
49	3066
50	2871
51	2755
52	2464
53	2475
54	2261
55	2131
56	1959
57	1930
58	1818
59	1791
60	1646
61	1540
62	1518
63	1437
64	1347
65	1327
66	1293
67	1087
68	1144
69	1063
70	1020
71	997
72	894
73	876
74	857
75	835
76	793
77	740
78	745
79	714
80	709
81	598
82	583
83	580
84	561
85	540
86	545
87	496
88	502
89	445
90	432
91	411
92	426
93	398
94	382
95	374
96	390
97	369
98	342
99	335
100	317
101	359
102	295
103	306
104	324
105	302
106	307
107	281
108	286
109	253
110	253
111	246
112	237
113	246
114	228
115	218
116	201
117	202
118	193
119	177
120	192
121	166
122	142
123	182
124	184
125	158
126	160
127	167
128	159
129	138
130	137
131	139
132	132
133	135
134	149
135	126
136	123
137	118
138	140
139	116
140	128
141	104
142	111
143	87
144	102
145	107
146	100
147	92
148	104
149	101
150	99
151	94
152	78
153	103
154	79
155	64
156	72
157	88
158	77
159	75
160	79
161	82
162	75
163	74
164	58
165	79
166	64
167	68
168	49
169	60
170	66
171	65
172	35
173	73
174	57
175	73
176	57
177	54
178	47
179	47
180	63
181	54
182	54
183	57
184	48
185	51
186	44
187	47
188	42
189	52
190	37
191	39
192	37
193	50
194	48
195	33
196	40
197	34
198	40
199	23
200	42
201	35
202	44
203	39
204	32
205	35
206	37
207	40
208	24
209	32
210	30
211	36
212	23
213	29
214	32
215	29
216	27
217	27
218	26
219	27
220	18
221	29
222	25
223	32
224	26
225	30
226	18
227	26
228	22
229	29
230	28
231	23
232	20
233	23
234	16
235	20
236	22
237	20
238	33
239	29
240	20
241	20
242	13
243	25
244	35
245	14
246	12
247	15
248	24
249	27
250	23
251	18
252	13
253	17
254	16
255	18
256	20
257	16
258	14
259	12
260	15
261	24
262	13
263	21
264	12
265	17
266	12
267	11
268	21
269	14
270	12
271	11
272	13
273	18
274	9
275	12
276	17
277	13
278	11
279	16
280	16
281	15
282	16
283	13
284	15
285	13
286	5
287	13
288	11
289	7
290	19
291	9
292	10
293	15
294	10
295	9
296	8
297	7
298	11
299	14
300	10
301	10
302	11
303	10
304	16
305	7
306	7
307	7
308	7
309	7
310	14
311	12
312	7
313	9
314	8
315	12
316	5
317	6
318	6
319	11
320	8
321	13
322	9
323	12
324	3
325	11
326	11
327	7
328	2
329	7
330	12
331	5
332	9
333	9
334	10
335	4
336	10
337	7
338	5
339	2
340	4
341	9
342	6
343	10
344	5
345	9
346	6
347	6
348	8
349	8
350	3
351	10
352	11
353	3
354	6
355	3
356	7
357	6
358	5
359	6
360	7
361	2
362	7
363	7
364	5
365	5
366	7
367	7
368	4
369	4
370	7
371	7
372	2
373	5
374	2
375	3
376	1
377	6
378	4
379	2
380	1
381	5
382	3
383	5
384	3
385	5
386	8
387	2
388	5
389	6
391	1
392	4
393	2
394	2
395	6
396	5
397	5
398	8
399	5
400	9
401	2
402	5
403	1
404	4
405	1
406	5
407	2
408	6
409	6
410	4
411	4
412	5
413	5
414	4
415	5
416	3
418	6
419	7
420	4
421	3
422	3
423	3
424	6
425	8
426	6
427	4
428	3
429	3
430	2
431	3
432	1
433	2
434	4
435	4
436	1
437	1
438	1
439	4
440	2
441	7
442	3
443	1
444	3
445	2
447	3
448	4
449	2
450	2
451	2
452	2
453	3
454	1
455	4
456	1
457	1
458	1
460	1
461	1
462	4
464	4
465	4
467	3
468	1
469	4
470	2
471	3
472	1
473	2
474	3
475	2
476	2
477	2
478	5
479	3
480	2
481	4
482	4
483	1
484	1
485	1
486	1
487	1
489	2
490	4
491	1
492	1
493	1
494	2
495	4
496	2
497	4
498	3
499	1
500	3
502	5
503	3
504	1
505	4
507	6
508	1
509	4
510	1
511	3
512	3
513	3
514	5
515	1
517	3
518	2
519	4
522	1
523	3
524	3
525	2
527	3
529	5
530	1
531	1
532	1
534	2
536	1
537	2
538	2
539	2
540	1
541	1
542	1
543	3
544	1
546	1
547	2
548	3
549	1
551	4
553	1
554	2
555	4
556	1
557	1
558	1
559	3
560	1
561	2
562	1
565	2
566	1
568	3
569	1
572	3
573	1
575	2
577	3
578	2
579	1
580	2
581	1
586	1
587	1
589	4
592	1
594	2
598	1
599	1
600	1
602	1
604	2
606	2
607	1
608	1
610	2
612	3
613	2
617	1
618	1
621	3
622	1
623	3
624	1
627	1
628	1
629	2
631	1
632	2
633	3
634	1
635	1
636	2
638	1
640	3
641	1
642	2
645	1
646	1
647	1
648	2
650	3
652	2
654	2
655	1
656	1
658	1
659	1
661	3
663	2
665	1
668	1
670	1
671	1
672	1
673	3
675	1
676	1
681	1
682	1
683	1
684	1
685	2
689	1
690	2
691	1
692	2
694	1
697	1
699	1
700	1
701	1
703	1
705	1
707	3
710	2
711	1
713	1
714	2
719	1
721	1
722	2
723	3
727	1
729	1
730	1
731	1
732	1
734	1
735	1
736	1
737	1
738	1
740	1
743	2
745	2
748	1
749	1
750	1
751	3
752	2
753	2
754	3
757	1
758	1
760	3
762	1
767	1
774	1
775	3
776	2
781	1
786	1
788	1
789	1
790	1
792	1
793	1
800	1
804	1
806	1
808	1
810	1
815	1
820	1
823	1
824	1
825	2
828	1
830	2
834	2
843	1
844	2
846	1
849	1
853	1
856	1
858	1
861	1
862	1
867	1
868	2
870	1
872	1
873	1
880	1
881	1
882	1
885	1
891	1
898	1
912	1
914	1
916	1
917	1
922	1
923	1
925	1
928	1
942	1
947	1
949	1
950	1
952	1
953	2
954	1
962	1
964	2
968	1
974	1
978	1
982	1
984	1
985	1
1003	1
1007	1
1009	1
1013	1
1015	1
1019	1
1022	1
1031	2
1039	1
1050	1
1055	1
1058	1
1063	1
1064	1
1067	1
1071	2
1075	1
1108	1
1109	1
1117	1
1124	1
1126	1
1136	1
1137	1
1141	1
1145	1
1149	1
1157	1
1168	1
1170	1
1172	1
1178	1
1181	1
1184	1
1212	1
1222	1
1234	1
1241	1
1243	1
1262	1
1263	1
1266	1
1279	1
1280	1
1288	1
1292	2
1299	1
1308	1
1309	1
1315	1
1330	1
1344	1
1348	1
1382	1
1388	1
1399	1
1402	1
1419	1
1426	1
1434	1
1447	1
1465	1
1469	1
1471	1
1483	1
1491	1
1493	1
1509	1
1522	1
1524	1
1595	1
1601	1
1641	1
1753	1
1799	1
1804	1
1842	1
1933	1
1943	1
1946	1
1955	1
2026	1
2057	1
2123	1
2161	1
2169	1
2242	1
2256	1
2303	1
2345	1
2380	1
2421	1
2485	1
2535	1
2778	1
2975	1
3050	1
3196	1
3352	1
4037	1
4194	1
4318	1
9834	1
10105	1
14210	1
38865	1
742919	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.............._..........._...._...._.............__._..._..._......_._.
...._....._.........._..._............._._._..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]