[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	392067567
Known Splicing Events:	389056944
Partial Novel Splicing Events:	1625925
Novel Splicing Events:	1250860
Filtered Splicing Events:	133838

Total splicing  Junctions:	528393
Known Splicing Junctions:	265241
Partial Novel Splicing Junctions:	133386
Novel Splicing Junctions:	129766

===================================================================
Create BED file ...
Create Interact file ...