Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/47066d7debdadfde3f66dca9da9d9c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/47066d7debdadfde3f66dca9da9d9c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/b55b988f0db827ef6281c559d1ba3f/659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/894c376224ce4045805d906648f998/659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 392067567
[W::hts_idx_load3] The index file is older than the data file: 659_bTo-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	392067567
Known Splicing Events:	389056944
Partial Novel Splicing Events:	1625925
Novel Splicing Events:	1250860
Filtered Splicing Events:	133838

Total splicing  Junctions:	528393
Known Splicing Junctions:	265241
Partial Novel Splicing Junctions:	133386
Novel Splicing Junctions:	129766

===================================================================
Create BED file ...
Create Interact file ...