File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/927af4dfa88806aa19ace42fbf5b17/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:26:58
                             Started mapping on |	Jun 08 09:33:21
                                    Finished on |	Jun 08 10:22:08
       Mapping speed, Million of reads per hour |	282.39

                          Number of input reads |	229595106
                      Average input read length |	254
                                    UNIQUE READS:
                   Uniquely mapped reads number |	222242102
                        Uniquely mapped reads % |	96.80%
                          Average mapped length |	253.76
                       Number of splices: Total |	264999475
            Number of splices: Annotated (sjdb) |	260066788
                       Number of splices: GT/AG |	261948396
                       Number of splices: GC/AG |	1586062
                       Number of splices: AT/AC |	160898
               Number of splices: Non-canonical |	1304119
                      Mismatch rate per base, % |	0.22%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.10
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5293994
             % of reads mapped to multiple loci |	2.31%
        Number of reads mapped to too many loci |	220708
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1631113
                 % of reads unmapped: too short |	0.71%
                Number of reads unmapped: other |	207189
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%