[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	311329443
Known Splicing Events:	307970198
Partial Novel Splicing Events:	1620600
Novel Splicing Events:	1603716
Filtered Splicing Events:	134929

Total splicing  Junctions:	384040
Known Splicing Junctions:	236816
Partial Novel Splicing Junctions:	81830
Novel Splicing Junctions:	65394

===================================================================
Create BED file ...
Create Interact file ...