Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/4678714b8e162a7dbf4c6cced3c370/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/d65ed465f175f5538488cd32c35f64/659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/85fa3a6e296f075d724a1b21e60b50/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/85fa3a6e296f075d724a1b21e60b50/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 311329443
[W::hts_idx_load3] The index file is older than the data file: 659_bQZ-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	311329443
Known Splicing Events:	307970198
Partial Novel Splicing Events:	1620600
Novel Splicing Events:	1603716
Filtered Splicing Events:	134929

Total splicing  Junctions:	384040
Known Splicing Junctions:	236816
Partial Novel Splicing Junctions:	81830
Novel Splicing Junctions:	65394

===================================================================
Create BED file ...
Create Interact file ...