Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/b02a7396bf6caf366aae276126d7b9/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/22a546d80840cb47a54fa44e21ab36/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/22a546d80840cb47a54fa44e21ab36/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/426fc4c9e5b1d3bbc25c389f266aaa/659_6i-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/457c5c1f7e05f6b759eced2f965783/659_6i-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 187001654
[W::hts_idx_load3] The index file is older than the data file: 659_6i-T1-TRNA-1_B23WHTKLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	187001654
Known Splicing Events:	184881542
Partial Novel Splicing Events:	1033037
Novel Splicing Events:	983438
Filtered Splicing Events:	103637

Total splicing  Junctions:	276886
Known Splicing Junctions:	201485
Partial Novel Splicing Junctions:	40197
Novel Splicing Junctions:	35204

===================================================================
Create BED file ...
Create Interact file ...