File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/2260037b652a41a7cc13f48ae9aa13/.command.log
Size
9.5 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_buD-T1-TRNA-1_B23WHTKLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/41ebaac4f2ac563cb4640a697dc886/659_buD-T1-TRNA-1_B23WHTKLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/f50af92fe31b50898544352ac099e1/659_buD-T1-TRNA-1_B23WHTKLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-99ebc9bd-f9f1-4b2c-b9a0-02ddaf99f257/75/8438968e551d03cb7cc7a0681df9ae/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/2260037b652a41a7cc13f48ae9aa13/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/2260037b652a41a7cc13f48ae9aa13/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
ETV6--ATF7IP
starfusion
arriba
MGA--GOLGA8UP
starfusion
arriba
ZNF721--CPLX1
starfusion
arriba
ARID4B--LINC01348
starfusion
ZNF670--SMYD3
starfusion
arriba
PAWR--MSRB3
starfusion
arriba
MCCC1--ABCC5
starfusion
arriba
ERC1--CCND2
starfusion
arriba
NFIB--CLCN3P1
starfusion
MSRB3--PAWR
starfusion
arriba
SLC30A9--APBB2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TOMM6--AC233266.1
starfusion
TLK2--AC240565.1
starfusion
ATP8A1--APBB2
starfusion
arriba
USP32--KRT34
starfusion
arriba
CYB5R4--SUMF1
starfusion
arriba
ETV6--GNAI2P1
arriba
ETV6--RPL30P11
arriba
TANC1--TANC1
arriba
PDXDC2P--AF186190.1
arriba
PDXDC2P--ST13P6
arriba
KDM4B--MUC16
arriba
KDM4B--BOLA3P2
arriba
TRIT1--HOOK3
arriba
CHAC1--ISCA1P4
arriba
CHAC1--CHAC1
arriba
DEK--DEK
arriba
DEK--Y_RNA
arriba
PDXDC2P--RPL32P20
arriba
NRG1--NRG1
arriba
MEGF9--GOPC
arriba
MEGF9--NEPNP
arriba
GALK2--AC023355.1
arriba
FAT2--GLRA1
arriba
AC011374.3--GLRA1
arriba
ERC1--AC007207.1
arriba
ERC1--CCND2-AS1
arriba
TVP23C--CDRT4
arriba
DTL--RGPD5
arriba
LTBP1--ZNF512
arriba
KLRC4--KLRK1
arriba
LIMCH1--GRXCR1
arriba
LIMCH1--AC111198.1
arriba

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Processing ETV6--ATF7IP:   0%|          | 0/44 [00:00<?, ?it/s]
Processing ETV6--ATF7IP:   2%|▏         | 1/44 [00:00<00:04,  9.25it/s]
Processing MGA--GOLGA8UP:   2%|▏         | 1/44 [00:00<00:04,  9.25it/s]
Processing MGA--GOLGA8UP:   5%|▍         | 2/44 [00:00<00:04,  9.48it/s]
Processing ZNF721--CPLX1:   5%|▍         | 2/44 [00:00<00:04,  9.48it/s]
Processing ZNF721--CPLX1:   7%|▋         | 3/44 [00:00<00:04,  9.55it/s]
Processing ARID4B--LINC01348:   7%|▋         | 3/44 [00:00<00:04,  9.55it/s]
Processing ARID4B--LINC01348:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]
Processing ZNF670--SMYD3:   9%|▉         | 4/44 [00:00<00:04,  9.59it/s]    
Processing ZNF670--SMYD3:  11%|█▏        | 5/44 [00:00<00:04,  9.61it/s]
Processing PAWR--MSRB3:  11%|█▏        | 5/44 [00:00<00:04,  9.61it/s]  
Processing PAWR--MSRB3:  14%|█▎        | 6/44 [00:00<00:03,  9.62it/s]
Processing MCCC1--ABCC5:  14%|█▎        | 6/44 [00:00<00:03,  9.62it/s]
Processing MCCC1--ABCC5:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s]
Processing ERC1--CCND2:  16%|█▌        | 7/44 [00:00<00:03,  9.63it/s] 
Processing ERC1--CCND2:  18%|█▊        | 8/44 [00:00<00:03,  9.63it/s]
Processing NFIB--CLCN3P1:  18%|█▊        | 8/44 [00:00<00:03,  9.63it/s]
Processing NFIB--CLCN3P1:  20%|██        | 9/44 [00:00<00:03,  9.64it/s]
Processing MSRB3--PAWR:  20%|██        | 9/44 [00:00<00:03,  9.64it/s]  
Processing MSRB3--PAWR:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing SLC30A9--APBB2:  23%|██▎       | 10/44 [00:01<00:03,  9.64it/s]
Processing SLC30A9--APBB2:  25%|██▌       | 11/44 [00:01<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  25%|██▌       | 11/44 [00:01<00:03,  9.64it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 12/44 [00:01<00:03,  9.64it/s]
Processing TOMM6--AC233266.1:  27%|██▋       | 12/44 [00:01<00:03,  9.64it/s] 
Processing TOMM6--AC233266.1:  30%|██▉       | 13/44 [00:01<00:03,  9.64it/s]
Processing TLK2--AC240565.1:  30%|██▉       | 13/44 [00:01<00:03,  9.64it/s] 
Processing TLK2--AC240565.1:  32%|███▏      | 14/44 [00:01<00:03,  9.63it/s]
Processing ATP8A1--APBB2:  32%|███▏      | 14/44 [00:01<00:03,  9.63it/s]   
Processing ATP8A1--APBB2:  34%|███▍      | 15/44 [00:01<00:03,  9.61it/s]
Processing USP32--KRT34:  34%|███▍      | 15/44 [00:01<00:03,  9.61it/s] 
Processing USP32--KRT34:  36%|███▋      | 16/44 [00:01<00:02,  9.59it/s]
Processing CYB5R4--SUMF1:  36%|███▋      | 16/44 [00:01<00:02,  9.59it/s]
Processing CYB5R4--SUMF1:  39%|███▊      | 17/44 [00:01<00:02,  9.58it/s]
Processing ETV6--GNAI2P1:  39%|███▊      | 17/44 [00:01<00:02,  9.58it/s]
Processing ETV6--GNAI2P1:  41%|████      | 18/44 [00:01<00:02,  9.57it/s]
Processing ETV6--RPL30P11:  41%|████      | 18/44 [00:01<00:02,  9.57it/s]
Processing ETV6--RPL30P11:  43%|████▎     | 19/44 [00:01<00:02,  9.57it/s]
Processing TANC1--TANC1:  43%|████▎     | 19/44 [00:01<00:02,  9.57it/s]  
Processing TANC1--TANC1:  45%|████▌     | 20/44 [00:02<00:02,  9.57it/s]
Processing PDXDC2P--AF186190.1:  45%|████▌     | 20/44 [00:02<00:02,  9.57it/s]
Processing PDXDC2P--AF186190.1:  48%|████▊     | 21/44 [00:02<00:02,  9.57it/s]
Processing PDXDC2P--ST13P6:  48%|████▊     | 21/44 [00:02<00:02,  9.57it/s]    
Processing PDXDC2P--ST13P6:  50%|█████     | 22/44 [00:02<00:02,  9.57it/s]
Processing KDM4B--MUC16:  50%|█████     | 22/44 [00:02<00:02,  9.57it/s]   
Processing KDM4B--MUC16:  52%|█████▏    | 23/44 [00:02<00:02,  9.57it/s]
Processing KDM4B--BOLA3P2:  52%|█████▏    | 23/44 [00:02<00:02,  9.57it/s]
Processing KDM4B--BOLA3P2:  55%|█████▍    | 24/44 [00:02<00:02,  9.58it/s]
Processing TRIT1--HOOK3:  55%|█████▍    | 24/44 [00:02<00:02,  9.58it/s]  
Processing TRIT1--HOOK3:  57%|█████▋    | 25/44 [00:02<00:01,  9.57it/s]
Processing CHAC1--ISCA1P4:  57%|█████▋    | 25/44 [00:02<00:01,  9.57it/s]
Processing CHAC1--ISCA1P4:  59%|█████▉    | 26/44 [00:02<00:01,  9.57it/s]
Processing CHAC1--CHAC1:  59%|█████▉    | 26/44 [00:02<00:01,  9.57it/s]  
Processing CHAC1--CHAC1:  61%|██████▏   | 27/44 [00:02<00:01,  9.58it/s]
Processing DEK--DEK:  61%|██████▏   | 27/44 [00:02<00:01,  9.58it/s]    
Processing DEK--DEK:  64%|██████▎   | 28/44 [00:02<00:01,  9.58it/s]
Processing DEK--Y_RNA:  64%|██████▎   | 28/44 [00:02<00:01,  9.58it/s]
Processing DEK--Y_RNA:  66%|██████▌   | 29/44 [00:03<00:01,  9.58it/s]
Processing PDXDC2P--RPL32P20:  66%|██████▌   | 29/44 [00:03<00:01,  9.58it/s]
Processing PDXDC2P--RPL32P20:  68%|██████▊   | 30/44 [00:03<00:01,  9.57it/s]
Processing NRG1--NRG1:  68%|██████▊   | 30/44 [00:03<00:01,  9.57it/s]       
Processing NRG1--NRG1:  70%|███████   | 31/44 [00:03<00:01,  9.58it/s]
Processing MEGF9--GOPC:  70%|███████   | 31/44 [00:03<00:01,  9.58it/s]
Processing MEGF9--GOPC:  73%|███████▎  | 32/44 [00:03<00:01,  9.57it/s]
Processing MEGF9--NEPNP:  73%|███████▎  | 32/44 [00:03<00:01,  9.57it/s]
Processing MEGF9--NEPNP:  75%|███████▌  | 33/44 [00:03<00:01,  9.57it/s]
Processing GALK2--AC023355.1:  75%|███████▌  | 33/44 [00:03<00:01,  9.57it/s]
Processing GALK2--AC023355.1:  77%|███████▋  | 34/44 [00:03<00:01,  9.57it/s]
Processing FAT2--GLRA1:  77%|███████▋  | 34/44 [00:03<00:01,  9.57it/s]      
Processing FAT2--GLRA1:  80%|███████▉  | 35/44 [00:03<00:00,  9.57it/s]
Processing AC011374.3--GLRA1:  80%|███████▉  | 35/44 [00:03<00:00,  9.57it/s]
Processing AC011374.3--GLRA1:  82%|████████▏ | 36/44 [00:03<00:00,  9.57it/s]
Processing ERC1--AC007207.1:  82%|████████▏ | 36/44 [00:03<00:00,  9.57it/s] 
Processing ERC1--AC007207.1:  84%|████████▍ | 37/44 [00:03<00:00,  9.57it/s]
Processing ERC1--CCND2-AS1:  84%|████████▍ | 37/44 [00:03<00:00,  9.57it/s] 
Processing ERC1--CCND2-AS1:  86%|████████▋ | 38/44 [00:03<00:00,  9.57it/s]
Processing TVP23C--CDRT4:  86%|████████▋ | 38/44 [00:03<00:00,  9.57it/s]  
Processing TVP23C--CDRT4:  89%|████████▊ | 39/44 [00:04<00:00,  9.57it/s]
Processing DTL--RGPD5:  89%|████████▊ | 39/44 [00:04<00:00,  9.57it/s]   
Processing DTL--RGPD5:  91%|█████████ | 40/44 [00:04<00:00,  9.57it/s]
Processing LTBP1--ZNF512:  91%|█████████ | 40/44 [00:04<00:00,  9.57it/s]
Processing LTBP1--ZNF512:  93%|█████████▎| 41/44 [00:04<00:00,  9.58it/s]
Processing KLRC4--KLRK1:  93%|█████████▎| 41/44 [00:04<00:00,  9.58it/s] 
Processing KLRC4--KLRK1:  95%|█████████▌| 42/44 [00:04<00:00,  9.57it/s]
Processing LIMCH1--GRXCR1:  95%|█████████▌| 42/44 [00:04<00:00,  9.57it/s]
Processing LIMCH1--GRXCR1:  98%|█████████▊| 43/44 [00:04<00:00,  9.57it/s]
Processing LIMCH1--AC111198.1:  98%|█████████▊| 43/44 [00:04<00:00,  9.57it/s]
Processing LIMCH1--AC111198.1: 100%|██████████| 44/44 [00:04<00:00,  9.58it/s]
Processing LIMCH1--AC111198.1: 100%|██████████| 44/44 [00:04<00:00,  9.58it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory