Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/12c31a54ad02e513e870e1cf5331ad/tih_rna_sample_00457_B23WHTKLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/1bc6eea0597dd981de4ee8704afd37/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/1bc6eea0597dd981de4ee8704afd37/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory